Structural insights into the recognition of the internal A-rich linker from OxyS sRNA by Escherichia coli Hfq.

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Structural insights into the recognition of the internal A-rich linker from OxyS sRNA by Escherichia coli Hfq. is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1093/NAR/GKV072
P932PMC publication ID4344510
P698PubMed publication ID25670676
P5875ResearchGate publication ID272190957

P50authorJiahai ZhangQ88128558
Yunyu ShiQ89243547
P2093author name stringFudong Li
Jihui Wu
Qingguo Gong
Lijun Wang
Weiwei Wang
P2860cites workMfold web server for nucleic acid folding and hybridization predictionQ24498105
The Escherichia coli OxyS regulatory RNA represses fhlA translation by blocking ribosome bindingQ24533360
Structures of the pleiotropic translational regulator Hfq and an Hfq-RNA complex: a bacterial Sm-like proteinQ24536928
Sm-like proteins in Eubacteria: the crystal structure of the Hfq protein from Escherichia coliQ27641658
Structure of Escherichia coli Hfq bound to polyriboadenylate RNAQ27658064
Structural basis for RNA 3'-end recognition by HfqQ27670724
Structural mechanism of Staphylococcus aureus Hfq binding to an RNA A-tractQ27672887
Cooperation of Escherichia coli Hfq hexamers in DsrA bindingQ27674771
Crystal structure of Hfq from Bacillus subtilis in complex with SELEX-derived RNA aptamer: insight into RNA-binding properties of bacterial HfqQ27675381
Hfq-bridged ternary complex is important for translation activation of rpoS by DsrAQ27677477
Mapping Hfq-RNA interaction surfaces using tryptophan fluorescence quenchingQ27680705
fhlA repression by OxyS RNA: kissing complex formation at two sites results in a stable antisense-target RNA complexQ74027600
Hfq structure, function and ligand bindingQ36774884
Conserved arginines on the rim of Hfq catalyze base pair formation and exchangeQ37122110
Cycling of RNAs on Hfq.Q38087172
Structure and RNA-binding properties of the bacterial LSm protein Hfq.Q38093756
RNA binding by Hfq and ring-forming (L)Sm proteins: a trade-off between optimal sequence readout and RNA backbone conformationQ38211777
The C-terminal domain of Escherichia coli Hfq is required for regulationQ38296490
Competition among Hfq-binding small RNAs in Escherichia coliQ38469100
RNAs actively cycle on the Sm-like protein Hfq.Q41429696
Special focus Hfq.Q43093503
The functional Hfq-binding module of bacterial sRNAs consists of a double or single hairpin preceded by a U-rich sequence and followed by a 3' poly(U) tailQ43149694
A small, stable RNA induced by oxidative stress: role as a pleiotropic regulator and antimutatorQ48047346
Despite similar binding to the Hfq protein regulatory RNAs widely differ in their competition performance.Q50109326
The influence of Escherichia coli Hfq mutations on RNA binding and sRNA•mRNA duplex formation in rpoS riboregulation.Q54353779
Hfq binds ribonucleotides in three different RNA-binding sitesQ27685299
HKL-3000: the integration of data reduction and structure solution--from diffraction images to an initial model in minutesQ27860502
NMRPipe: a multidimensional spectral processing system based on UNIX pipesQ27860859
Phasercrystallographic softwareQ27860930
The CCP4 suite: programs for protein crystallographyQ27861090
The Sm-like Hfq protein increases OxyS RNA interaction with target mRNAsQ28216159
Escherichia coli Hfq has distinct interaction surfaces for DsrA, rpoS and poly(A) RNAsQ28292183
Hfq binding changes the structure of Escherichia coli small noncoding RNAs OxyS and RprA, which are involved in the riboregulation of rpoSQ28293533
Cycling of the Sm-like protein Hfq on the DsrA small regulatory RNAQ28294752
Escherichia coli Hfq binds A18 and DsrA domain II with similar 2:1 Hfq6/RNA stoichiometry using different surface sitesQ28306489
Small RNA binding to the lateral surface of Hfq hexamers and structural rearrangements upon mRNA target recognitionQ28727846
Hfq and its constellation of RNAQ29615791
Hfq: a bacterial Sm-like protein that mediates RNA-RNA interactionQ29619904
The C-terminal domain of Escherichia coli Hfq increases the stability of the hexamer.Q33199784
The stoichiometry of the Escherichia coli Hfq protein bound to RNA.Q33785527
The OxyS regulatory RNA represses rpoS translation and binds the Hfq (HF-I) proteinQ33889724
Positive regulation by small RNAs and the role of HfqQ34006620
Hfq, a new chaperoning role: binding to messenger RNA determines access for small RNA regulatorQ34107548
The RpoS-mediated general stress response in Escherichia coliQ34189650
Recognition of U-rich RNA by Hfq from the Gram-positive pathogen Listeria monocytogenes.Q34240871
Mutations in interaction surfaces differentially impact E. coli Hfq association with small RNAs and their mRNA targetsQ34322538
Bacterial small RNA-based negative regulation: Hfq and its accomplicesQ34325200
Disruption of small RNA signaling caused by competition for Hfq.Q34508819
Structural model of an mRNA in complex with the bacterial chaperone Hfq.Q34661444
PolyU tail of rho-independent terminator of bacterial small RNAs is essential for Hfq actionQ35164771
Multiple factors dictate target selection by Hfq-binding small RNAsQ35931768
Requirement of upstream Hfq-binding (ARN)x elements in glmS and the Hfq C-terminal region for GlmS upregulation by sRNAs GlmZ and GlmY.Q36228436
Small RNA regulators and the bacterial response to stressQ36668567
P275copyright licenseCreative Commons Attribution-NonCommercial 4.0 InternationalQ34179348
P6216copyright statuscopyrightedQ50423863
P433issue4
P407language of work or nameEnglishQ1860
P921main subjectEscherichia coliQ25419
P304page(s)2400-2411
P577publication date2015-02-10
P1433published inNucleic Acids ResearchQ135122
P1476titleStructural insights into the recognition of the internal A-rich linker from OxyS sRNA by Escherichia coli Hfq.
P478volume43

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cites work (P2860)
Q41699610A Genome-Wide Prediction and Identification of Intergenic Small RNAs by Comparative Analysis in Mesorhizobium huakuii 7653R.
Q27704887Characterization of RNA-binding properties of the archaeal Hfq-like protein from Methanococcus jannaschii
Q35933178Hfq: the flexible RNA matchmaker
Q38602982Intermolecular base stacking mediates RNA-RNA interaction in a crystal structure of the RNA chaperone Hfq.
Q26748796RNA systems biology: uniting functional discoveries and structural tools to understand global roles of RNAs
Q47945575The novel sRNA s015 improves nisin yield by increasing acid tolerance of Lactococcus lactis F44.

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