Requirement of upstream Hfq-binding (ARN)x elements in glmS and the Hfq C-terminal region for GlmS upregulation by sRNAs GlmZ and GlmY.

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Requirement of upstream Hfq-binding (ARN)x elements in glmS and the Hfq C-terminal region for GlmS upregulation by sRNAs GlmZ and GlmY. is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1093/NAR/GKS392
P932PMC publication ID3439879
P698PubMed publication ID22661574
P5875ResearchGate publication ID225095661

P2093author name stringAndrew L Feig
Nilshad N Salim
Jane A Philip
Martha A Faner
P2860cites workTwo seemingly homologous noncoding RNAs act hierarchically to activate glmS mRNA translationQ21145881
Identification of the Hfq-binding site on DsrA RNA: Hfq binds without altering DsrA secondary structureQ24540168
Implication of membrane localization of target mRNA in the action of a small RNA: mechanism of post-transcriptional regulation of glucose transporter in Escherichia coliQ24557422
Regulatory RNAs in bacteriaQ24595082
Genomic SELEX for Hfq-binding RNAs identifies genomic aptamers predominantly in antisense transcriptsQ24633132
DsrA RNA regulates translation of RpoS message by an anti-antisense mechanism, independent of its action as an antisilencer of transcriptionQ24645477
Hfq binding at RhlB-recognition region of RNase E is crucial for the rapid degradation of target mRNAs mediated by sRNAs in Escherichia coli.Q54372530
The Sm-like protein Hfq regulates polyadenylation dependent mRNA decay in Escherichia coli.Q54496668
Functional effects of variants of the RNA chaperone HfqQ61758808
High-throughput SHAPE analysis reveals structures in HIV-1 genomic RNA strongly conserved across distinct biological statesQ37210511
Small regulatory non-coding RNAs in bacteria: physiology and mechanistic aspectsQ37348337
Bacterial chromosome-encoded small regulatory RNAsQ37389545
Multiple target regulation by small noncoding RNAs rewires gene expression at the post-transcriptional levelQ37444341
The C-terminal domain of Escherichia coli Hfq is required for regulationQ38296490
C-Terminally Truncated Derivatives of Escherichia coli Hfq Are Proficient in RiboregulationQ38340396
Coincident Hfq binding and RNase E cleavage sites on mRNA and small regulatory RNAsQ39784092
Antisense RNA control in bacteria, phages, and plasmidsQ40573014
The transcription elongation complex directs activation-induced cytidine deaminase-mediated DNA deaminationQ41493193
Small RNA-induced mRNA degradation achieved through both translation block and activated cleavageQ41912798
Major role for mRNA binding and restructuring in sRNA recruitment by Hfq.Q42174762
RNase E action at a distance: degradation of target mRNAs mediated by an Hfq-binding small RNA in bacteriaQ42618064
Requirement of the CsdA DEAD-box helicase for low temperature riboregulation of rpoS mRNAQ42713382
Bacterial proteins required for replication of phage Q ribonucleic acid. Pruification and properties of host factor I, a ribonucleic acid-binding proteinQ44199523
Hfq is essential for Vibrio cholerae virulence and downregulates sigma expressionQ47269170
A small, stable RNA induced by oxidative stress: role as a pleiotropic regulator and antimutatorQ48047346
Despite similar binding to the Hfq protein regulatory RNAs widely differ in their competition performance.Q50109326
Essential Bacillus subtilis genesQ24681292
The RNA chaperone Hfq is essential for the virulence of Salmonella typhimuriumQ24683356
Regulation by small RNAs in bacteria: expanding frontiersQ27009044
Structure of Escherichia coli Hfq bound to polyriboadenylate RNAQ27658064
The structures of mutant forms of Hfq fromPseudomonas aeruginosareveal the importance of the conserved His57 for the protein hexamer organizationQ27663220
Structural analysis of full-length Hfq fromEscherichia coliQ27667727
Structural basis for RNA 3'-end recognition by HfqQ27670724
Origins and Mechanisms of miRNAs and siRNAsQ27860822
Feedback control of glucosamine-6-phosphate synthase GlmS expression depends on the small RNA GlmZ and involves the novel protein YhbJ in Escherichia coliQ28247175
A conserved small RNA promotes discoordinate expression of the glmUS operon mRNA to activate GlmS synthesisQ28248562
Structural basis of glmS ribozyme activation by glucosamine-6-phosphateQ28264810
The rpoS mRNA leader recruits Hfq to facilitate annealing with DsrA sRNAQ28288672
Escherichia coli Hfq has distinct interaction surfaces for DsrA, rpoS and poly(A) RNAsQ28292183
Physiological consequences of small RNA-mediated regulation of glucose-phosphate stressQ28294772
Effect of Hfq on RprA-rpoS mRNA pairing: Hfq-RNA binding and the influence of the 5' rpoS mRNA leader regionQ28295584
Prospects for riboswitch discovery and analysisQ28654385
Selective 2'-hydroxyl acylation analyzed by primer extension (SHAPE): quantitative RNA structure analysis at single nucleotide resolutionQ29617336
RNA structure analysis at single nucleotide resolution by selective 2'-hydroxyl acylation and primer extension (SHAPE)Q29617337
RNase E-based ribonucleoprotein complexes: mechanical basis of mRNA destabilization mediated by bacterial noncoding RNAsQ29619938
Conditionally amplifiable BACs: switching from single-copy to high-copy vectors and genomic clonesQ30845659
Copy-control pBAC/oriV vectors for genomic cloningQ31097946
Global systems-level analysis of Hfq and SmpB deletion mutants in Salmonella: implications for virulence and global protein translationQ33416805
An upstream Hfq binding site in the fhlA mRNA leader region facilitates the OxyS-fhlA interactionQ33712153
Selection of peptides targeting helix 31 of bacterial 16S ribosomal RNA by screening M13 phage-display librariesQ33806989
Essential requirements for robust signaling in Hfq dependent small RNA networksQ34005271
Positive regulation by small RNAs and the role of HfqQ34006620
The poly(A) binding protein Hfq protects RNA from RNase E and exoribonucleolytic degradationQ34053758
The RNA-binding protein Hfq of Listeria monocytogenes: role in stress tolerance and virulenceQ34149244
Disruption of small RNA signaling caused by competition for Hfq.Q34508819
Regulatory mechanisms employed by cis-encoded antisense RNAsQ34612437
Structural insights into the dynamics and function of the C-terminus of the E. coli RNA chaperone Hfq.Q35040942
RelA protein stimulates the activity of RyhB small RNA by acting on RNA-binding protein Hfq.Q35849677
The RNA binding protein Hfq interacts specifically with tRNAs.Q36470338
Hfq structure, function and ligand bindingQ36774884
P275copyright licenseCreative Commons Attribution-NonCommercial 3.0 UnportedQ18810331
P6216copyright statuscopyrightedQ50423863
P4510describes a project that usesImageQuantQ112270642
P433issue16
P407language of work or nameEnglishQ1860
P304page(s)8021-8032
P577publication date2012-05-31
P1433published inNucleic Acids ResearchQ135122
P1476titleRequirement of upstream Hfq-binding (ARN)x elements in glmS and the Hfq C-terminal region for GlmS upregulation by sRNAs GlmZ and GlmY.
P478volume40

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cites work (P2860)
Q41691955Acidic C-terminal domains autoregulate the RNA chaperone Hfq
Q36172268Alternative Hfq-sRNA interaction modes dictate alternative mRNA recognition
Q34325200Bacterial small RNA-based negative regulation: Hfq and its accomplices
Q37346798C-terminal domain of the RNA chaperone Hfq drives sRNA competition and release of target RNA.
Q34240883Clostridium difficile Hfq can replace Escherichia coli Hfq for most of its function
Q34577902Crystallization and preliminary X-ray diffraction analysis of YhbJ from Escherichia coli, a key protein involved in the GlmYZ sRNA regulatory cascade
Q38087172Cycling of RNAs on Hfq.
Q38295541Domain swapping between homologous bacterial small RNAs dissects processing and Hfq binding determinants and uncovers an aptamer for conditional RNase E cleavage.
Q35562122Effects of Hfq on the conformation and compaction of DNA.
Q35069174Emerging functions for the Staphylococcus aureus RNome
Q24490554Global RNA recognition patterns of post-transcriptional regulators Hfq and CsrA revealed by UV crosslinking in vivo
Q37015883Hfq assists small RNAs in binding to the coding sequence of ompD mRNA and in rearranging its structure
Q57260318Hfq chaperone brings speed dating to bacterial sRNA
Q27677477Hfq-bridged ternary complex is important for translation activation of rpoS by DsrA
Q35620619How do base-pairing small RNAs evolve?
Q34740470Identifying and characterizing Hfq-RNA interactions
Q38602982Intermolecular base stacking mediates RNA-RNA interaction in a crystal structure of the RNA chaperone Hfq.
Q27680705Mapping Hfq-RNA interaction surfaces using tryptophan fluorescence quenching
Q34322538Mutations in interaction surfaces differentially impact E. coli Hfq association with small RNAs and their mRNA targets
Q38199289Ménage à trois: post-transcriptional control of the key enzyme for cell envelope synthesis by a base-pairing small RNA, an RNase adaptor protein, and a small RNA mimic
Q35548333New insight into the structure and function of Hfq C-terminus
Q34056874Pleiotropic role of the RNA chaperone protein Hfq in the human pathogen Clostridium difficile
Q34122762Revisiting the coding potential of the E. coli genome through Hfq co-immunoprecipitation
Q21131292Sibling rivalry: related bacterial small RNAs and their redundant and non-redundant roles
Q35131127Structural insights into the recognition of the internal A-rich linker from OxyS sRNA by Escherichia coli Hfq.
Q38093756Structure and RNA-binding properties of the bacterial LSm protein Hfq.
Q21131294The small RNA SgrS: roles in metabolism and pathogenesis of enteric bacteria

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