| scholarly article | Q13442814 |
| P2093 | author name string | A L Feig | |
| M A Faner | |||
| P2860 | cites work | Deep sequencing analysis of small noncoding RNA and mRNA targets of the global post-transcriptional regulator, Hfq | Q21145046 |
| Global functional atlas of Escherichia coli encompassing previously uncharacterized proteins | Q21145830 | ||
| Large-scale mapping and validation of Escherichia coli transcriptional regulation from a compendium of expression profiles | Q21145898 | ||
| Functional characterization of the RNA chaperone Hfq in the opportunistic human pathogen Stenotrophomonas maltophilia | Q24489878 | ||
| A small RNA regulates the expression of genes involved in iron metabolism in Escherichia coli | Q24536169 | ||
| Hfq-dependent regulation of OmpA synthesis is mediated by an antisense RNA. | Q24536474 | ||
| Structures of the pleiotropic translational regulator Hfq and an Hfq-RNA complex: a bacterial Sm-like protein | Q24536928 | ||
| Identification of the Hfq-binding site on DsrA RNA: Hfq binds without altering DsrA secondary structure | Q24540168 | ||
| Identification of small Hfq-binding RNAs in Listeria monocytogenes | Q24548795 | ||
| MicC, a second small-RNA regulator of Omp protein expression in Escherichia coli | Q24563596 | ||
| Regulatory RNAs in bacteria | Q24595082 | ||
| Multiplexed RNA structure characterization with selective 2'-hydroxyl acylation analyzed by primer extension sequencing (SHAPE-Seq) | Q24596281 | ||
| sRNAs and the virulence of Salmonella enterica serovar Typhimurium | Q24597091 | ||
| Identification of novel small RNAs using comparative genomics and microarrays | Q24601229 | ||
| RNAstructure: software for RNA secondary structure prediction and analysis | Q24602642 | ||
| RNApredator: fast accessibility-based prediction of sRNA targets | Q24603023 | ||
| Transcriptome-wide identification of RNA-binding protein and microRNA target sites by PAR-CLIP | Q24630900 | ||
| Genomic SELEX for Hfq-binding RNAs identifies genomic aptamers predominantly in antisense transcripts | Q24633132 | ||
| RNomics in Escherichia coli detects new sRNA species and indicates parallel transcriptional output in bacteria | Q24641843 | ||
| DsrA RNA regulates translation of RpoS message by an anti-antisense mechanism, independent of its action as an antisilencer of transcription | Q24645477 | ||
| Argonaute HITS-CLIP decodes microRNA-mRNA interaction maps | Q24645826 | ||
| Small RNA-induced differential degradation of the polycistronic mRNA iscRSUA | Q24649054 | ||
| Small noncoding RNA GcvB is a novel regulator of acid resistance in Escherichia coli | Q24651398 | ||
| The 5' end of two redundant sRNAs is involved in the regulation of multiple targets, including their own regulator | Q24653385 | ||
| Small RNAs and small proteins involved in resistance to cell envelope stress and acid shock in Escherichia coli: analysis of a bar-coded mutant collection | Q24654108 | ||
| IntaRNA: efficient prediction of bacterial sRNA targets incorporating target site accessibility and seed regions | Q24655171 | ||
| SigmaE-dependent small RNAs of Salmonella respond to membrane stress by accelerating global omp mRNA decay | Q24669800 | ||
| Hfq modulates the sigmaE-mediated envelope stress response and the sigma32-mediated cytoplasmic stress response in Escherichia coli | Q24680586 | ||
| Requirement of upstream Hfq-binding (ARN)x elements in glmS and the Hfq C-terminal region for GlmS upregulation by sRNAs GlmZ and GlmY. | Q36228436 | ||
| Characterization of Vibrio cholerae Hfq provides novel insights into the role of the Hfq C-terminal region | Q36335906 | ||
| Sm-like protein Hfq: location of the ATP-binding site and the effect of ATP on Hfq-- RNA complexes. | Q36393509 | ||
| The RNA binding protein Hfq interacts specifically with tRNAs. | Q36470338 | ||
| From ribosome to riboswitch: control of gene expression in bacteria by RNA structural rearrangements | Q36648410 | ||
| High-throughput single-nucleotide structural mapping by capillary automated footprinting analysis | Q36740166 | ||
| TargetRNA: a tool for predicting targets of small RNA action in bacteria | Q36749437 | ||
| ShapeFinder: a software system for high-throughput quantitative analysis of nucleic acid reactivity information resolved by capillary electrophoresis | Q36909671 | ||
| High-throughput SHAPE analysis reveals structures in HIV-1 genomic RNA strongly conserved across distinct biological states | Q37210511 | ||
| Predicting sRNAs and their targets in bacteria | Q37318569 | ||
| Multiple target regulation by small noncoding RNAs rewires gene expression at the post-transcriptional level | Q37444341 | ||
| The role of Hfq in bacterial pathogens | Q37676558 | ||
| Dual-function RNA regulators in bacteria | Q37911599 | ||
| Evolution of microRNA diversity and regulation in animals | Q37957677 | ||
| Transcriptome-wide analysis of protein-RNA interactions using high-throughput sequencing. | Q37972715 | ||
| Facilitating RNA structure prediction with microarrays | Q38316976 | ||
| Competition among Hfq-binding small RNAs in Escherichia coli | Q38469100 | ||
| RNAs actively cycle on the Sm-like protein Hfq. | Q41429696 | ||
| Study of E. coli Hfq's RNA annealing acceleration and duplex destabilization activities using substrates with different GC-contents | Q41430016 | ||
| Studying RNA-RNA and RNA-protein interactions by isothermal titration calorimetry. | Q41857843 | ||
| Major role for mRNA binding and restructuring in sRNA recruitment by Hfq. | Q42174762 | ||
| Small regulatory RNAs control the multi-cellular adhesive lifestyle of Escherichia coli. | Q42500644 | ||
| RNA SHAPE analysis in living cells | Q43099400 | ||
| Pervasive post-transcriptional control of genes involved in amino acid metabolism by the Hfq-dependent GcvB small RNA. | Q43576806 | ||
| Experimental identification of small non-coding regulatory RNAs in the opportunistic human pathogen Burkholderia cenocepacia J2315. | Q43932569 | ||
| Functional analysis of reverse transcription by a frameshift pol mutant of murine leukemia virus | Q45848638 | ||
| Hfq is essential for Vibrio cholerae virulence and downregulates sigma expression | Q47269170 | ||
| A small, stable RNA induced by oxidative stress: role as a pleiotropic regulator and antimutator | Q48047346 | ||
| Despite similar binding to the Hfq protein regulatory RNAs widely differ in their competition performance. | Q50109326 | ||
| Construction of two mathematical models for prediction of bacterial sRNA targets. | Q51878092 | ||
| The Sm-like protein Hfq regulates polyadenylation dependent mRNA decay in Escherichia coli. | Q54496668 | ||
| The host factor required for RNA phage Qbeta RNA replication in vitro. Intracellular location, quantitation, and purification by polyadenylate-cellulose chromatography | Q67508261 | ||
| The RNA chaperone Hfq is essential for the virulence of Salmonella typhimurium | Q24683356 | ||
| A dual function for a bacterial small RNA: SgrS performs base pairing-dependent regulation and encodes a functional polypeptide | Q24683800 | ||
| A survey of small RNA-encoding genes in Escherichia coli | Q24684021 | ||
| Translational control and target recognition by Escherichia coli small RNAs in vivo | Q24684847 | ||
| Regulation by small RNAs in bacteria: expanding frontiers | Q27009044 | ||
| Structure of Escherichia coli Hfq bound to polyriboadenylate RNA | Q27658064 | ||
| Structural basis for RNA 3'-end recognition by Hfq | Q27670724 | ||
| Structural mechanism of Staphylococcus aureus Hfq binding to an RNA A-tract | Q27672887 | ||
| Cooperation of Escherichia coli Hfq hexamers in DsrA binding | Q27674771 | ||
| Crystal structure of Hfq from Bacillus subtilis in complex with SELEX-derived RNA aptamer: insight into RNA-binding properties of bacterial Hfq | Q27675381 | ||
| Global analysis of small RNA and mRNA targets of Hfq | Q28184898 | ||
| Novel small RNA-encoding genes in the intergenic regions of Escherichia coli | Q28205853 | ||
| The Sm-like Hfq protein increases OxyS RNA interaction with target mRNAs | Q28216159 | ||
| A genetic approach for finding small RNAs regulators of genes of interest identifies RybC as regulating the DpiA/DpiB two-component system | Q28244233 | ||
| Base-pairing requirement for RNA silencing by a bacterial small RNA and acceleration of duplex formation by Hfq | Q28253347 | ||
| A conserved RpoS-dependent small RNA controls the synthesis of major porin OmpD | Q28255704 | ||
| Targeting of csgD by the small regulatory RNA RprA links stationary phase, biofilm formation and cell envelope stress in Escherichia coli | Q28260482 | ||
| Effect of RyhB small RNA on global iron use in Escherichia coli | Q28275120 | ||
| Systematic deletion of Salmonella small RNA genes identifies CyaR, a conserved CRP-dependent riboregulator of OmpX synthesis | Q28275777 | ||
| A minimal base-pairing region of a bacterial small RNA SgrS required for translational repression of ptsG mRNA | Q28277876 | ||
| CLIP: a method for identifying protein-RNA interaction sites in living cells | Q28284054 | ||
| The rpoS mRNA leader recruits Hfq to facilitate annealing with DsrA sRNA | Q28288672 | ||
| Integrating anaerobic/aerobic sensing and the general stress response through the ArcZ small RNA | Q28289704 | ||
| Involvement of a novel transcriptional activator and small RNA in post-transcriptional regulation of the glucose phosphoenolpyruvate phosphotransferase system | Q28291273 | ||
| Escherichia coli Hfq has distinct interaction surfaces for DsrA, rpoS and poly(A) RNAs | Q28292183 | ||
| Cycling of the Sm-like protein Hfq on the DsrA small regulatory RNA | Q28294752 | ||
| Mechanism of RNA silencing by Hfq-binding small RNAs | Q28294833 | ||
| Recognition of heptameric seed sequence underlies multi-target regulation by RybB small RNA in Salmonella enterica | Q28296796 | ||
| Evidence for an autonomous 5' target recognition domain in an Hfq-associated small RNA | Q28297881 | ||
| The E. coli signal recognition particle is required for the insertion of a subset of inner membrane proteins | Q28302083 | ||
| Small RNA binding to 5' mRNA coding region inhibits translational initiation | Q28305161 | ||
| Escherichia coli Hfq binds A18 and DsrA domain II with similar 2:1 Hfq6/RNA stoichiometry using different surface sites | Q28306489 | ||
| Small RNA binding to the lateral surface of Hfq hexamers and structural rearrangements upon mRNA target recognition | Q28727846 | ||
| AU-rich elements: characterization and importance in mRNA degradation | Q29547896 | ||
| Interaction network containing conserved and essential protein complexes in Escherichia coli | Q29615776 | ||
| Hfq and its constellation of RNA | Q29615791 | ||
| RNA structure analysis at single nucleotide resolution by selective 2'-hydroxyl acylation and primer extension (SHAPE) | Q29617337 | ||
| RNase E-based ribonucleoprotein complexes: mechanical basis of mRNA destabilization mediated by bacterial noncoding RNAs | Q29619938 | ||
| sTarPicker: a method for efficient prediction of bacterial sRNA targets based on a two-step model for hybridization | Q31028970 | ||
| Detection of small RNAs in Pseudomonas aeruginosa by RNomics and structure-based bioinformatic tools | Q33373607 | ||
| Global systems-level analysis of Hfq and SmpB deletion mutants in Salmonella: implications for virulence and global protein translation | Q33416805 | ||
| Involvement of the post-transcriptional regulator Hfq in Yersinia pestis virulence | Q33481007 | ||
| Genomic SELEX: a discovery tool for genomic aptamers | Q33602164 | ||
| Proteomic alterations explain phenotypic changes in Sinorhizobium meliloti lacking the RNA chaperone Hfq. | Q33705174 | ||
| An upstream Hfq binding site in the fhlA mRNA leader region facilitates the OxyS-fhlA interaction | Q33712153 | ||
| The stoichiometry of the Escherichia coli Hfq protein bound to RNA. | Q33785527 | ||
| The response regulator SprE (RssB) is required for maintaining poly(A) polymerase I-degradosome association during stationary phase | Q33962944 | ||
| Essential requirements for robust signaling in Hfq dependent small RNA networks | Q34005271 | ||
| Positive regulation by small RNAs and the role of Hfq | Q34006620 | ||
| An atlas of Hfq-bound transcripts reveals 3' UTRs as a genomic reservoir of regulatory small RNAs | Q34033315 | ||
| Base pairing small RNAs and their roles in global regulatory networks | Q34061171 | ||
| Hfq, a new chaperoning role: binding to messenger RNA determines access for small RNA regulator | Q34107548 | ||
| The RNA-binding protein Hfq of Listeria monocytogenes: role in stress tolerance and virulence | Q34149244 | ||
| A complex network of small non-coding RNAs regulate motility in Escherichia coli | Q34296188 | ||
| Characterization of broadly pleiotropic phenotypes caused by an hfq insertion mutation in Escherichia coli K-12. | Q34327163 | ||
| Identification of a novel small RNA modulating Francisella tularensis pathogenicity | Q34359360 | ||
| Lead(II) as a probe for investigating RNA structure in vivo | Q34364384 | ||
| Bacterial small RNA regulators | Q34409384 | ||
| Disruption of small RNA signaling caused by competition for Hfq. | Q34508819 | ||
| Methods for measuring aptamer-protein equilibria: a review | Q34518680 | ||
| Regulatory mechanisms employed by cis-encoded antisense RNAs | Q34612437 | ||
| Kinetic studies of RNA-protein interactions using surface plasmon resonance. | Q34675844 | ||
| Methods and statistics for combining motif match scores | Q34749635 | ||
| Structural insights into the dynamics and function of the C-terminus of the E. coli RNA chaperone Hfq. | Q35040942 | ||
| PolyU tail of rho-independent terminator of bacterial small RNAs is essential for Hfq action | Q35164771 | ||
| Functional characterization of bacterial sRNAs using a network biology approach | Q35217099 | ||
| Isoenergetic microarrays to study the structure and interactions of DsrA and OxyS RNAs in two- and three-component complexes | Q35852136 | ||
| Regulation of the Escherichia coli hfq gene encoding the host factor for phage Q beta | Q36104877 | ||
| P433 | issue | 2 | |
| P304 | page(s) | 144-159 | |
| P577 | publication date | 2013-05-23 | |
| P1433 | published in | Methods | Q6823859 |
| P1476 | title | Identifying and characterizing Hfq-RNA interactions | |
| P478 | volume | 63 |
| Q47400265 | A bacterial three-hybrid assay detects Escherichia coli Hfq-sRNA interactions in vivo |
| Q60936628 | Bacterial Small RNAs in the Genus spp |
| Q43796398 | Editorial for "non-coding RNA methods". |
| Q28584594 | Functional and Structural Analysis of a Highly-Expressed Yersinia pestis Small RNA following Infection of Cultured Macrophages |
| Q33588980 | Iron-regulated small RNA expression as Neisseria gonorrhoeae FA 1090 transitions into stationary phase growth |
| Q42686098 | Profiling of Mycoplasma gallisepticum Ribosomes |
| Q29048623 | Small Regulatory RNAs of Rickettsia conorii |
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