Regulatory mechanisms employed by cis-encoded antisense RNAs

scientific article

Regulatory mechanisms employed by cis-encoded antisense RNAs is …
instance of (P31):
review articleQ7318358
scholarly articleQ13442814

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P356DOI10.1016/J.MIB.2007.03.012
P698PubMed publication ID17387036
P5875ResearchGate publication ID6420623

P2093author name stringSabine Brantl
P433issue2
P304page(s)102-109
P577publication date2007-03-26
P1433published inCurrent Opinion in MicrobiologyQ15752444
P1476titleRegulatory mechanisms employed by cis-encoded antisense RNAs
P478volume10

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cites work (P2860)
Q41387125A cis-encoded sRNA controls the expression of fabH2 in Yersinia
Q41949572A cis-encoded sRNA, Hfq and mRNA secondary structure act independently to suppress IS200 transposition
Q21093388A genome-wide survey of sRNAs in the symbiotic nitrogen-fixing alpha-proteobacterium Sinorhizobium meliloti
Q30492888A global view of the nonprotein-coding transcriptome in Plasmodium falciparum
Q33556318A hidden Markov support vector machine framework incorporating profile geometry learning for identifying microbial RNA in tiling array data
Q37122019A modular strategy for engineering orthogonal chimeric RNA transcription regulators
Q38333799A multifactor regulatory circuit involving H-NS, VirF and an antisense RNA modulates transcription of the virulence gene icsA of Shigella flexneri.
Q42400220A multistress responsive type I toxin-antitoxin system: bsrE/SR5 from the B. subtilis chromosome
Q34096685A novel antisense RNA regulates at transcriptional level the virulence gene icsA of Shigella flexneri.
Q41975860A remarkably stable kissing-loop interaction defines substrate recognition by the Neurospora Varkud Satellite ribozyme.
Q36186387A role for Rho-dependent polarity in gene regulation by a noncoding small RNA
Q34779533A simple and efficient method to search for selected primary transcripts: non-coding and antisense RNAs in the human pathogen Enterococcus faecalis
Q33560237A single-base resolution map of an archaeal transcriptome
Q42151687Achieving large dynamic range control of gene expression with a compact RNA transcription-translation regulator
Q34145427Acis-Encoded Antisense Small RNA Regulated by the HP0165-HP0166 Two-Component System Controls Expression ofureBinHelicobacter pylori
Q38029010Acting antisense: plasmid- and chromosome-encoded sRNAs from Gram-positive bacteria
Q33561652An antisense RNA in a lytic cyanophage links psbA to a gene encoding a homing endonuclease
Q34019509An antisense RNA that governs the expression kinetics of a multifunctional virulence gene
Q34238067An in silico model for identification of small RNAs in whole bacterial genomes: characterization of antisense RNAs in pathogenic Escherichia coli and Streptococcus agalactiae strains
Q37622082An overview of RNAs with regulatory functions in gram-positive bacteria
Q33712153An upstream Hfq binding site in the fhlA mRNA leader region facilitates the OxyS-fhlA interaction
Q42659981Analysis of the mechanism of action of the antisense RNA that controls the replication of the repABC plasmid p42d
Q33375207Analysis of wheat SAGE tags reveals evidence for widespread antisense transcription
Q35120837Antisense RNA associated with biological regulation of a restriction-modification system
Q35894739Antisense transcription as a tool to tune gene expression
Q54218191Antisense transcription in Pseudomonas aeruginosa.
Q48063237Antisense-RNA-mediated plasmid copy number control in pCG1-family plasmids, pCGR2 and pCG1, in Corynebacterium glutamicum
Q50133705Bacillus subtilis Type I antitoxin SR6 Promotes Degradation of Toxin yonT mRNA and Is Required to Prevent Toxic yoyJ Overexpression
Q60936628Bacterial Small RNAs in the Genus spp
Q37389545Bacterial chromosome-encoded small regulatory RNAs
Q27692531Bacterial small RNA regulators: versatile roles and rapidly evolving variations
Q37916225Bacterial transcriptomics: what is beyond the RNA horiz-ome?
Q44758965BsrG/SR4 from Bacillus subtilis--the first temperature-dependent type I toxin-antitoxin system
Q28752025Cartography of methicillin-resistant S. aureus transcripts: detection, orientation and temporal expression during growth phase and stress conditions
Q37038591Characterizing RNA structures in vitro and in vivo with selective 2'-hydroxyl acylation analyzed by primer extension sequencing (SHAPE-Seq).
Q35722762Cis-Antisense Transcription Gives Rise to Tunable Genetic Switch Behavior: A Mathematical Modeling Approach
Q27004394Cis-encoded non-coding antisense RNAs in streptococci and other low GC Gram (+) bacterial pathogens
Q33686912Comparative analysis of plasmids in the genus Listeria
Q28728285Comparative transcriptomics of pathogenic and non-pathogenic Listeria species
Q35668006Comprehensive transcriptome analysis of the periodontopathogenic bacterium Porphyromonas gingivalis W83.
Q38327247Condition-dependent transcriptome reveals high-level regulatory architecture in Bacillus subtilis
Q35035108Convergent transcription confers a bistable switch in Enterococcus faecalis conjugation.
Q33963878Convergent transcription in the butyrolactone regulon in Streptomyces coelicolor confers a bistable genetic switch for antibiotic biosynthesis
Q91594621Coordinate regulation of the expression of SdsR toxin and its downstream pphA gene by RyeA antitoxin in Escherichia coli
Q86642084Creating small transcription activating RNAs
Q24568187Curli synthesis and biofilm formation in enteric bacteria are controlled by a dynamic small RNA module made up of a pseudoknot assisted by an RNA chaperone
Q90027369Current and Promising Approaches to Identify Horizontal Gene Transfer Events in Metagenomes
Q38006609Current knowledge on regulatory RNAs and their machineries in Staphylococcus aureus.
Q36280099De novo automated design of small RNA circuits for engineering synthetic riboregulation in living cells
Q37918500Deciphering the regulatory codes in bacterial genomes
Q42115225Deep sequencing uncovers numerous small RNAs on all four replicons of the plant pathogen Agrobacterium tumefaciens
Q42014958Defining a role for Hfq in Gram-positive bacteria: evidence for Hfq-dependent antisense regulation in Listeria monocytogenes
Q47194252Design rules of synthetic non-coding RNAs in bacteria
Q47104312Development of a high efficiency integration system and promoter library for rapid modification of Pseudomonas putida KT2440.
Q34310279Divergently overlapping cis-encoded antisense RNA regulating toxin-antitoxin systems from E. coli: hok/sok, ldr/rdl, symE/symR.
Q41032616Dual-function sRNA encoded peptide SR1P modulates moonlighting activity of B. subtilis GapA.
Q28297881Evidence for an autonomous 5' target recognition domain in an Hfq-associated small RNA
Q24622806Experimental discovery of small RNAs in Staphylococcus aureus reveals a riboregulator of central metabolism
Q33575820Experimental identification and characterization of 97 novel npcRNA candidates in Salmonella enterica serovar Typhi
Q34270687Expression of antisense small RNAs in response to stress in Pseudomonas aeruginosa
Q37812338Function of plastid sigma factors in higher plants: regulation of gene expression or just preservation of constitutive transcription?
Q47141009Genetic circuit characterization and debugging using RNA-seq
Q38243092Genome engineering and gene expression control for bacterial strain development
Q33799810Genome-Wide Detection of Small Regulatory RNAs in Deep-Sea Bacterium Shewanella piezotolerans WP3
Q35647819Genome-wide antisense transcription drives mRNA processing in bacteria
Q33525404Genome-wide detection of predicted non-coding RNAs in Rhizobium etli expressed during free-living and host-associated growth using a high-resolution tiling array
Q34722556Genome-wide identification of regulatory RNAs in the human pathogen Clostridium difficile.
Q28247876Genome-wide identification of small RNAs in the opportunistic pathogen Enterococcus faecalis V583
Q30017423Genome-wide identification of transcriptional start sites in the haloarchaeon Haloferax volcanii based on differential RNA-Seq (dRNA-Seq)
Q34623152Global mapping of transcription start sites and promoter motifs in the symbiotic α-proteobacterium Sinorhizobium meliloti 1021.
Q35624257Global transcriptome analysis reveals small RNAs affecting Neisseria meningitidis bacteremia.
Q38077029Helicase-mediated changes in RNA structure at the single-molecule level.
Q34308667Helicobacter pylori 5'ureB-sRNA, a cis-encoded antisense small RNA, negatively regulates ureAB expression by transcription termination
Q38965431Hypothesis: type I toxin-antitoxin genes enter the persistence field-a feedback mechanism explaining membrane homoeostasis
Q34342486Identification and characterization of a cis-encoded antisense RNA associated with the replication process of Salmonella enterica serovar Typhi
Q24621796Identification and functional characterization of small non-coding RNAs in Xanthomonas oryzae pathovar oryzae
Q34206765Identification by cDNA cloning of abundant sRNAs in a human-avirulent Yersinia pestis strain grown under five different growth conditions
Q42377413Identification of 15 candidate structured noncoding RNA motifs in fungi by comparative genomics
Q52595198Identification of Plasmid-Encoded sRNAs in a blaNDM-1-Harboring Multidrug-Resistance Plasmid pNDM-HK in Enterobacteriaceae.
Q46246177Identification of sRNA mediated responses to nutrient depletion in Burkholderia pseudomallei
Q34740470Identifying and characterizing Hfq-RNA interactions
Q40325177In Vitro Characterization of the Type I Toxin-Antitoxin System bsrE/SR5 from Bacillus subtilis
Q89625583In silico prediction and expression profile analysis of small non-coding RNAs in Herbaspirillum seropedicae SmR1
Q24683587In vitro analysis of the interaction between the small RNA SR1 and its primary target ahrC mRNA
Q37046466Long noncoding RNA Saf and splicing factor 45 increase soluble Fas and resistance to apoptosis
Q58441341Loop-loop interactions involved in antisense regulation are processed by the endoribonuclease III inStaphylococcus aureus
Q27003237Molecular call and response: the physiology of bacterial small RNAs
Q34395461Multi-target regulation by small RNAs synchronizes gene expression thresholds and may enhance ultrasensitive behavior
Q35139020Neighboring gene regulation by antisense long non-coding RNAs
Q34042969New facets in the regulation of gene expression by ADP-ribosylation and poly(ADP-ribose) polymerases
Q37082004Next-generation annotation of prokaryotic genomes with EuGene-P: application to Sinorhizobium meliloti 2011.
Q35016286Noncoding RNA of glutamine synthetase I modulates antibiotic production in Streptomyces coelicolor A3(2).
Q26700139Novel Insights into Insect-Microbe Interactions-Role of Epigenomics and Small RNAs
Q40091765Novel small RNA (sRNA) landscape of the starvation-stress response transcriptome of Salmonella enterica serovar typhimurium
Q42876254One antitoxin--two functions: SR4 controls toxin mRNA decay and translation
Q27010559Plasmids in the driving seat: The regulatory RNA Rcd gives plasmid ColE1 control over division and growth of its E. coli host
Q34056874Pleiotropic role of the RNA chaperone protein Hfq in the human pathogen Clostridium difficile
Q37392501Poly(A)-assisted RNA decay and modulators of RNA stability
Q84947079Prokaryotic transcriptomics: a new view on regulation, physiology and pathogenicity
Q33577327Protein-to-mRNA ratios are conserved between Pseudomonas aeruginosa strains
Q29114114RNA sequencing uncovers antisense RNAs and novel small RNAs in Streptococcus pyogenes
Q37309280RNA switches regulate initiation of translation in bacteria.
Q28299505RNA-Seq of Bacillus licheniformis: active regulatory RNA features expressed within a productive fermentation
Q89975694RNA-Sequencing Analyses of Small Bacterial RNAs and their Emergence as Virulence Factors in Host-Pathogen Interactions
Q34538123RNase III participates in GadY-dependent cleavage of the gadX-gadW mRNA.
Q37111565RaoN, a small RNA encoded within Salmonella pathogenicity island-11, confers resistance to macrophage-induced stress
Q34146403Rapid decay of unstable Leishmania mRNAs bearing a conserved retroposon signature 3'-UTR motif is initiated by a site-specific endonucleolytic cleavage without prior deadenylation
Q37439888Rcs signalling-activated transcription of rcsA induces strong anti-sense transcription of upstream fliPQR flagellar genes from a weak intergenic promoter: regulatory roles for the anti-sense transcript in virulence and motility
Q24603059Recognition and discrimination of target mRNAs by Sib RNAs, a cis-encoded sRNA family
Q27009044Regulation by small RNAs in bacteria: expanding frontiers
Q35040969Regulation of gene expression in restriction-modification system Eco29kI
Q38103937Regulation of pathogenicity by noncoding RNAs in bacteria
Q38435296Regulatory RNAs in Bacillus subtilis: a Gram-Positive Perspective on Bacterial RNA-Mediated Regulation of Gene Expression.
Q24595082Regulatory RNAs in bacteria
Q58587570Regulatory sRNAs in Cyanobacteria
Q27024935Relaxosome function and conjugation regulation in F-like plasmids - a structural biology perspective
Q36228436Requirement of upstream Hfq-binding (ARN)x elements in glmS and the Hfq C-terminal region for GlmS upregulation by sRNAs GlmZ and GlmY.
Q26769016Riboregulation of bacterial and archaeal transposition
Q37367676Riboswitch RNAs: using RNA to sense cellular metabolism
Q24653055S-box and T-box riboswitches and antisense RNA control a sulfur metabolic operon of Clostridium acetobutylicum
Q24598531SR1--a small RNA with two remarkably conserved functions
Q41166235Sense overlapping transcripts in IS1341-type transposase genes are functional non-coding RNAs in archaea
Q27026497Small RNAs in the Vibrionaceae: an ocean still to be explored
Q26852464Small RNAs, 5' UTR elements and RNA-binding proteins in intracellular bacteria: impact on metabolism and virulence
Q35155330Small Regulatory RNA and Legionella pneumophila.
Q34765262Small non-coding RNAs in Caulobacter crescentus
Q38191748Small regulatory RNAs from low-GC Gram-positive bacteria
Q37348337Small regulatory non-coding RNAs in bacteria: physiology and mechanistic aspects
Q21131561Staphylococcus aureus RNAIII binds to two distant regions of coa mRNA to arrest translation and promote mRNA degradation
Q54410493Staphylococcus aureus endoribonuclease III purification and properties.
Q42976804Strand-specific community RNA-seq reveals prevalent and dynamic antisense transcription in human gut microbiota
Q24629240Structural analysis of the Anti-Q-Qs interaction: RNA-mediated regulation of E. faecalis plasmid pCF10 conjugation
Q34105926Structural features of metabolite-sensing riboswitches
Q37796158Studying bacterial transcriptomes using RNA-seq
Q37318464TAAPP: Tiling Array Analysis Pipeline for Prokaryotes
Q41107755The 5'-tail of antisense RNAII of pMV158 plays a critical role in binding to the target mRNA and in translation inhibition of repB.
Q28131414The Listeria transcriptional landscape from saprophytism to virulence.
Q28830485The RNA Structure of cis-acting Translational Elements of the Chloroplast psbC mRNA in Chlamydomonas reinhardtii
Q24606909The ZorO-OrzO type I toxin-antitoxin locus: repression by the OrzO antitoxin
Q33661903The centrality of RNA for engineering gene expression
Q37612649The double-stranded transcriptome of Escherichia coli
Q44674694The excludon: a new concept in bacterial antisense RNA-mediated gene regulation
Q35017796The intracellular sRNA transcriptome of Listeria monocytogenes during growth in macrophages
Q21133924The novel cis-encoded small RNA h2cR is a negative regulator of hfq2 in Burkholderia cenocepacia
Q50030555The small RNA RybA regulates key-genes in the biosynthesis of aromatic amino acids under peroxide stress in E. coli.
Q39519699The small RNA SraG participates in PNPase homeostasis
Q57183085The small RNA, SdsR, acts as a novel type of toxin in Escherichia coli
Q64897602Toxin⁻Antitoxin Systems in Bacillus subtilis.
Q42928229Transcription termination in the plasmid/virus hybrid pSSVx from Sulfolobus islandicus
Q21091098Transcriptional and Post-Transcriptional Regulation of the Escherichia coli luxS mRNA; Involvement of the sRNA MicA
Q56918071Transcriptome Complexity in a Genome-Reduced Bacterium
Q28710534Transcriptomic profiling of the oyster pathogen Vibrio splendidus opens a window on the evolutionary dynamics of the small RNA repertoire in the Vibrio genus
Q42753882Translational regulation by an intramolecular stem-loop is required for intermolecular RNA regulation of the par addiction module
Q38051553Type I toxin-antitoxin systems in Bacillus subtilis.
Q36931479Using in-cell SHAPE-Seq and simulations to probe structure-function design principles of RNA transcriptional regulators.
Q33356773Whole genome transcription profiling of Anaplasma phagocytophilum in human and tick host cells by tiling array analysis
Q41895141Widespread antisense transcription in Escherichia coli.
Q87607235[Role of small noncoding RNA in the regulation of bacterial virulence]
Q30017448cis-Encoded Small RNAs, a Conserved Mechanism for Repression of Polysaccharide Utilization in Bacteroides
Q37850790cis-antisense RNA, another level of gene regulation in bacteria.
Q33807840nocoRNAc: characterization of non-coding RNAs in prokaryotes
Q34043559sRNAs in bacterial type I and type III toxin-antitoxin systems

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