Sense overlapping transcripts in IS1341-type transposase genes are functional non-coding RNAs in archaea

scientific article published on January 2015

Sense overlapping transcripts in IS1341-type transposase genes are functional non-coding RNAs in archaea is …
instance of (P31):
scholarly articleQ13442814

External links are
P356DOI10.1080/15476286.2015.1019998
P932PMC publication ID4615843
P698PubMed publication ID25806405
P5875ResearchGate publication ID274090026

P50authorTie KoideQ42578174
Nitin S BaligaQ61147359
Ricardo Zorzetto Nicoliello VêncioQ102311386
P2093author name stringJosé Vicente Gomes-Filho
Livia Soares Zaramela
Valéria Cristina da Silva Italiani
P2860cites workGeneral transcription factor specified global gene regulation in archaeaQ35721656
Insertion sequence diversity in archaeaQ35740880
Prevalence of transcription promoters within archaeal operons and coding sequences.Q37262286
Sequence organization and insertion specificity of the novel chimeric ISHp609 transposable element of Helicobacter pylori.Q37596279
Model organisms retain an "ecological memory" of complex ecologically relevant environmental variation.Q37643253
Gene regulation by antisense transcriptionQ38161766
Bacterial insertion sequences: their genomic impact and diversityQ38185470
Revolutions in rapid amplification of cDNA ends: new strategies for polymerase chain reaction cloning of full-length cDNA endsQ40421729
Curiosities of REPINs and RAYTsQ42136400
A predictive model for transcriptional control of physiology in a free living cell.Q51897861
ISDra2 transposition in Deinococcus radiodurans is downregulated by TnpB.Q54315894
Prokaryotic transcriptomics: a new view on regulation, physiology and pathogenicityQ84947079
Transcription start site associated RNAs (TSSaRNAs) are ubiquitous in all domains of lifeQ21090591
Haloquadratum walsbyi: limited diversity in a global pondQ21135343
Genome sequence of Halobacterium species NRC-1Q22066243
Evolution in the laboratory: The genome of Halobacterium salinarum strain R1 compared to that of strain NRC-1Q22162489
Noncoding RNA genes identified in AT-rich hyperthermophilesQ24530589
ISfinder: the reference centre for bacterial insertion sequencesQ24538230
CyloFold: secondary structure prediction including pseudoknotsQ24621690
The Vienna RNA websuiteQ24646014
Mechanism of IS200/IS605 Family DNA Transposases: Activation and Transposon-Directed Target Site SelectionQ27649763
DNA recognition and the precleavage state during single-stranded DNA transposition in D. radioduransQ27664876
CompaRNA: a server for continuous benchmarking of automated methods for RNA secondary structure predictionQ28709001
Genome-wide transcription and the implications for genomic organizationQ29617047
Primary transcriptome map of the hyperthermophilic archaeon Thermococcus kodakarensisQ30017682
Stem loop sequences specific to transposable element IS605 are found linked to lipoprotein genes in Borrelia plasmids.Q30912623
The expanding world of small RNAs in the hyperthermophilic archaeon Sulfolobus solfataricusQ33212636
Prediction of RNA pseudoknots using heuristic modeling with mapping and sequential foldingQ33299471
Irradiation-induced Deinococcus radiodurans genome fragmentation triggers transposition of a single resident insertion sequenceQ33525568
ISbrowser: an extension of ISfinder for visualizing insertion sequences in prokaryotic genomesQ33600564
Integration and visualization of systems biology data in context of the genomeQ33636132
An evolutionarily conserved RNase-based mechanism for repression of transcriptional positive autoregulationQ33768399
Identification of CRISPR and riboswitch related RNAs among novel noncoding RNAs of the euryarchaeon Pyrococcus abyssi.Q33931101
Transposition of ISHp608, member of an unusual family of bacterial insertion sequencesQ34016167
Conservation of transcription start sites within genes across a bacterial genusQ34165402
Rich parameterization improves RNA structure predictionQ34228343
Regulatory mechanisms employed by cis-encoded antisense RNAsQ34612437
Developmental expression of non-coding RNAs in Chlamydia trachomatis during normal and persistent growthQ34699793
A system-level model for the microbial regulatory genomeQ34986584
Niche adaptation by expansion and reprogramming of general transcription factors.Q35682099
P433issue5
P304page(s)490-500
P577publication date2015-01-01
P1433published inRNA BiologyQ7277167
P1476titleSense overlapping transcripts in IS1341-type transposase genes are functional non-coding RNAs in archaea
P478volume12

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cites work (P2860)
Q41854791A transposon-derived small RNA regulates gene expression in Salmonella Typhimurium
Q99557785CRISPR-Based Diagnosis of Infectious and Noninfectious Diseases
Q36256836Diversity and evolution of class 2 CRISPR-Cas systems
Q30017423Genome-wide identification of transcriptional start sites in the haloarchaeon Haloferax volcanii based on differential RNA-Seq (dRNA-Seq)
Q26769016Riboregulation of bacterial and archaeal transposition
Q47626617Silent but deadly: IS200 promotes pathogenicity in Salmonella Typhimurium
Q64903086The Primary Antisense Transcriptome of Halobacterium salinarum NRC-1.

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