| scholarly article | Q13442814 |
| P50 | author | Aaron N Brooks | Q37841128 |
| Christopher Plaisier | Q55271688 | ||
| Sriram Chandrasekaran | Q59557861 | ||
| Nitin S Baliga | Q61147359 | ||
| P2093 | author name string | Min Pan | |
| David J Reiss | |||
| Amardeep Kaur | |||
| Antoine Allard | |||
| Diego M Salvanha | |||
| Wei-Ju Wu | |||
| P2860 | cites work | Archaeal transcriptional regulation of the prokaryotic KdpFABC complex mediating K(+) uptake in H. salinarum | Q43032716 |
| The dipeptide permease of Escherichia coli closely resembles other bacterial transport systems and shows growth-phase-dependent expression | Q48077783 | ||
| Extracting regulatory networks of Escherichia coli from RegulonDB. | Q50155941 | ||
| A predictive model for transcriptional control of physiology in a free living cell. | Q51897861 | ||
| Link communities reveal multiscale complexity in networks | Q57405864 | ||
| Cohesins bind to preferential sites along yeast chromosome III, with differential regulation along arms versus the centric region | Q78066772 | ||
| Large-scale mapping and validation of Escherichia coli transcriptional regulation from a compendium of expression profiles | Q21145898 | ||
| WGCNA: an R package for weighted correlation network analysis | Q21284194 | ||
| Integrated biclustering of heterogeneous genome-wide datasets for the inference of global regulatory networks | Q21284254 | ||
| Wisdom of crowds for robust gene network inference | Q24604615 | ||
| RegulonDB version 7.0: transcriptional regulation of Escherichia coli K-12 integrated within genetic sensory response units (Gensor Units) | Q24612687 | ||
| DAVID: Database for Annotation, Visualization, and Integrated Discovery | Q27499374 | ||
| Quantifying similarity between motifs | Q27499384 | ||
| A novel genetic system to detect protein-protein interactions | Q27860915 | ||
| Genome-wide mapping of in vivo protein-DNA interactions | Q29547162 | ||
| Module networks: identifying regulatory modules and their condition-specific regulators from gene expression data | Q29618517 | ||
| The Inferelator: an algorithm for learning parsimonious regulatory networks from systems-biology data sets de novo | Q30478837 | ||
| Identifying gene regulatory elements by genome-wide recovery of DNase hypersensitive sites | Q31036736 | ||
| DISTILLER: a data integration framework to reveal condition dependency of complex regulons in Escherichia coli | Q33415393 | ||
| An evolutionarily conserved RNase-based mechanism for repression of transcriptional positive autoregulation | Q33768399 | ||
| Phenotypic landscape of a bacterial cell | Q33780274 | ||
| Binding protein-dependent transport systems | Q34030447 | ||
| Advantages and limitations of current network inference methods | Q34135038 | ||
| Multiple high-throughput analyses monitor the response of E. coli to perturbations | Q34578020 | ||
| Methods and statistics for combining motif match scores | Q34749635 | ||
| The housekeeping dipeptide permease is the Escherichia coli heme transporter and functions with two optional peptide binding proteins | Q35036520 | ||
| The PurR regulon in Escherichia coli K-12 MG1655. | Q35174764 | ||
| General transcription factor specified global gene regulation in archaea | Q35721656 | ||
| Archaeal transcription and its regulators | Q36139379 | ||
| DNA sequence of the carA gene and the control region of carAB: tandem promoters, respectively controlled by arginine and the pyrimidines, regulate the synthesis of carbamoyl-phosphate synthetase in Escherichia coli K-12. | Q36264803 | ||
| Indirect and suboptimal control of gene expression is widespread in bacteria | Q36856676 | ||
| Extracting the multiscale backbone of complex weighted networks. | Q37167691 | ||
| Deciphering the transcriptional regulatory logic of amino acid metabolism | Q37184501 | ||
| Prevalence of transcription promoters within archaeal operons and coding sequences. | Q37262286 | ||
| P304 | page(s) | 740 | |
| P577 | publication date | 2014-07-15 | |
| P1433 | published in | Molecular Systems Biology | Q2261043 |
| P1476 | title | A system-level model for the microbial regulatory genome | |
| P478 | volume | 10 |
| Q34312961 | A high-resolution network model for global gene regulation in Mycobacterium tuberculosis |
| Q46296036 | A transcription network of interlocking positive feedback loops maintains intracellular iron balance in archaea |
| Q40312082 | An experimentally supported model of the Bacillus subtilis global transcriptional regulatory network. |
| Q31159224 | CMIP: a software package capable of reconstructing genome-wide regulatory networks using gene expression data |
| Q39592757 | Causal Mechanistic Regulatory Network for Glioblastoma Deciphered Using Systems Genetics Network Analysis. |
| Q64019871 | Characterization of the transcriptome of Haloferax volcanii, grown under four different conditions, with mixed RNA-Seq |
| Q34853593 | Comparative genomics of DtxR family regulons for metal homeostasis in Archaea |
| Q28080776 | Computing the functional proteome: recent progress and future prospects for genome-scale models |
| Q36022309 | Conserved Units of Co-Expression in Bacterial Genomes: An Evolutionary Insight into Transcriptional Regulation |
| Q28083689 | Data-driven integration of genome-scale regulatory and metabolic network models |
| Q37619116 | Detecting differential growth of microbial populations with Gaussian process regression. |
| Q35659785 | Development of New Modular Genetic Tools for Engineering the Halophilic Archaeon Halobacterium salinarum |
| Q36593124 | Fostering synergy between cell biology and systems biology. |
| Q38616713 | Genome-Wide Mapping of Transcriptional Regulation and Metabolism Describes Information-Processing Units in Escherichia coli |
| Q45945843 | Global transcriptional regulatory network for Escherichia coli robustly connects gene expression to transcription factor activities. |
| Q58716718 | Internal RNAs overlapping coding sequences can drive the production of alternative proteins in archaea |
| Q98158311 | Selective Translation of Low Abundance and Upregulated Transcripts in Halobacterium salinarum |
| Q41166235 | Sense overlapping transcripts in IS1341-type transposase genes are functional non-coding RNAs in archaea |
| Q41689740 | Systematic Discovery of Archaeal Transcription Factor Functions in Regulatory Networks through Quantitative Phenotyping Analysis |
| Q40937422 | Systems biology approaches to defining transcription regulatory networks in halophilic archaea |
| Q64903086 | The Primary Antisense Transcriptome of Halobacterium salinarum NRC-1. |
| Q28606795 | Transcriptional program for nitrogen starvation-induced lipid accumulation in Chlamydomonas reinhardtii |
| Q35885874 | cMonkey2: Automated, systematic, integrated detection of co-regulated gene modules for any organism |
Search more.