Experimental identification and characterization of 97 novel npcRNA candidates in Salmonella enterica serovar Typhi

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Experimental identification and characterization of 97 novel npcRNA candidates in Salmonella enterica serovar Typhi is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1093/NAR/GKQ281
P932PMC publication ID2943607
P698PubMed publication ID20460466
P5875ResearchGate publication ID44590189

P50authorTimofey S RozhdestvenskyQ57985298
Robaiza ZakariaQ61162344
Chee Hock HoeQ64025685
P2093author name stringAnja Zemann
Carsten A Raabe
Gerrit Randau
Juergen Brosius
Suresh V Chinni
Thean-Hock Tang
P2860cites workThe challenge of regulation in a minimal photoautotroph: non-coding RNAs in ProchlorococcusQ21145045
Deep sequencing analysis of small noncoding RNA and mRNA targets of the global post-transcriptional regulator, HfqQ21145046
Biocomputational prediction of small non-coding RNAs in StreptomycesQ21263182
Intergenic transcription is required to repress the Saccharomyces cerevisiae SER3 geneQ22122492
Probing the structure of RNAIII, the Staphylococcus aureus agr regulatory RNA, and identification of the RNA domain involved in repression of protein A expressionQ24539754
An internal antisense RNA regulates expression of the photosynthesis gene isiAQ24547055
Binding of L7Ae protein to the K-turn of archaeal snoRNAs: a shared RNA binding motif for C/D and H/ACA box snoRNAs in ArchaeaQ24550436
Comparative genomics of Salmonella enterica serovar Typhi strains Ty2 and CT18Q24554266
Noncoding RNA gene detection using comparative sequence analysisQ24555068
Detection of 5'- and 3'-UTR-derived small RNAs and cis-encoded antisense RNAs in Escherichia coliQ24556624
The small RNA, DsrA, is essential for the low temperature expression of RpoS during exponential growth in Escherichia coliQ24562141
GadY, a small-RNA regulator of acid response genes in Escherichia coliQ24563573
RNomics in Escherichia coli detects new sRNA species and indicates parallel transcriptional output in bacteriaQ24641843
Small RNAs encoded within genetic islands of Salmonella typhimurium show host-induced expression and role in virulenceQ24641915
The RNA chaperone Hfq is essential for the virulence of Salmonella typhimuriumQ24683356
Translational control and target recognition by Escherichia coli small RNAs in vivoQ24684847
RNA expression analysis using a 30 base pair resolution Escherichia coli genome arrayQ28139158
Global analysis of small RNA and mRNA targets of HfqQ28184898
Antisense starts making more senseQ28187514
Multiple hok genes on the chromosome of Escherichia coliQ28199067
Novel small RNA-encoding genes in the intergenic regions of Escherichia coliQ28205853
Molecular characterization of long direct repeat (LDR) sequences expressing a stable mRNA encoding for a 35-amino-acid cell-killing peptide and a cis-encoded small antisense RNA in Escherichia coliQ28214985
Base-pairing requirement for RNA silencing by a bacterial small RNA and acceleration of duplex formation by HfqQ28253347
DNA N-glycosidases: properties of uracil-DNA glycosidase from Escherichia coliQ28293904
Mechanism of RNA silencing by Hfq-binding small RNAsQ28294833
Specific synthesis of DNA in vitro via a polymerase-catalyzed chain reactionQ28298254
A rough guide to the non-coding RNA world of SalmonellaQ28300754
Two primate-specific small non-protein-coding RNAs in transgenic mice: neuronal expression, subcellular localization and binding partnersQ28763514
[21] Specific synthesis of DNA in vitro via a polymerase-catalyzed chain reactionQ29544077
Tiny RNAs associated with transcription start sites in animals.Q52697120
Comparative genomics of small RNAs in bacterial genomes.Q54443705
The concentration of polypeptide chain release factors 1 and 2 at different growth rates of Escherichia coli.Q54633541
Expression of peptide chain release factor 2 requires high-efficiency frameshift.Q54777875
Tus prevents overreplication of oriC plasmid DNAQ72724817
Genome-wide search reveals a novel GacA-regulated small RNA in Pseudomonas speciesQ95778916
RNA maps reveal new RNA classes and a possible function for pervasive transcriptionQ29614334
A global view of the nonprotein-coding transcriptome in Plasmodium falciparumQ30492888
Molecular cloning and characterization of the Salmonella enterica Serovar Paratyphi B rma Gene, which confers multiple drug resistance in Escherichia coliQ30799340
Stepwise chromatin remodelling by a cascade of transcription initiation of non-coding RNAsQ33372325
A strand-specific RNA-Seq analysis of the transcriptome of the typhoid bacillus Salmonella typhiQ33483317
tus, the trans-acting gene required for termination of DNA replication in Escherichia coli, encodes a DNA-binding proteinQ33840724
OxyR, a positive regulator of hydrogen peroxide-inducible genes in Escherichia coli and Salmonella typhimurium, is homologous to a family of bacterial regulatory proteinsQ33855733
The IS10 antisense RNA blocks ribosome binding at the transposase translation initiation siteQ33919403
Small non-coding RNAs and the bacterial outer membraneQ34000397
Antisense-RNA regulation and RNA interferenceQ34129310
Redox-operated genetic switches: the SoxR and OxyR transcription factorsQ34141396
Promoter occlusion: Transcription through a promoter may inhibit its activityQ34250774
Bacterial small RNA regulatorsQ34409384
Regulatory mechanisms employed by cis-encoded antisense RNAsQ34612437
Small RNAs in bacteria: diverse regulators of gene expression in response to environmental changesQ34635312
A small non-coding RNA of the invasion gene island (SPI-1) represses outer membrane protein synthesis from the Salmonella core genomeQ34707860
Specific interactions of the L10(L12)4 ribosomal protein complex with mRNA, rRNA, and L11.Q34745543
Expression and characterization of the Escherichia coli fdo locus and a possible physiological role for aerobic formate dehydrogenaseQ35599895
Termination sites T1 and T2 from the Escherichia coli chromosome inhibit DNA replication in ColE1-derived plasmidsQ36175331
The role of RNAs in the regulation of virulence-gene expression.Q36418318
The genome of Salmonella enterica serovar TyphiQ36854781
Small mobile sequences in bacteria display diverse structure/function motifs.Q37034461
Non-coding RNAs regulating the transcriptional machineryQ37058515
Riboswitches: emerging themes in RNA structure and functionQ37197969
Transcriptional regulation of fis operon involves a module of multiple coupled promoters.Q39646656
ramR mutations involved in efflux-mediated multidrug resistance in Salmonella enterica serovar TyphimuriumQ39686150
Repression of IS200 transposase synthesis by RNA secondary structures.Q39729036
Induction of expression of hfq by DksA is essential for Shigella flexneri virulenceQ40223748
Antisense RNA control in bacteria, phages, and plasmidsQ40573014
The Escherichia coli regulatory protein OxyR discriminates between methylated and unmethylated states of the phage Mu mom promoterQ40818757
RamA is an alternate activator of the multidrug resistance cascade in Enterobacter aerogenesQ40968152
Sequence analysis, expression, and conservation of Escherichia coli uracil DNA glycosylase and its gene (ung).Q42648901
Effect of transcriptional activators RamA and SoxS on expression of multidrug efflux pumps AcrAB and AcrEF in fluoroquinolone-resistant Salmonella TyphimuriumQ43625441
Features of replication fork blockage by the Escherichia coli terminus-binding proteinQ46278539
A small, stable RNA induced by oxidative stress: role as a pleiotropic regulator and antimutatorQ48047346
Multidrug resistance in Klebsiella pneumoniae: a novel gene, ramA, confers a multidrug resistance phenotype in Escherichia coliQ48071863
Identification and characterization of a gene that controls colony morphology and auto-aggregation in Escherichia coli K12.Q48273694
Gene organization and primary structure of a ribosomal RNA operon from Escherichia coliQ48409667
Predicting antisense RNAs in the genomes of Escherichia coli and Salmonella typhimurium using promoter-search algorithm PlatPromQ50079191
P275copyright licenseCreative Commons Attribution-NonCommercial 2.5 GenericQ19113746
P6216copyright statuscopyrightedQ50423863
P433issue17
P407language of work or nameEnglishQ1860
P921main subjectSalmonella entericaQ2264864
P304page(s)5893-5908
P577publication date2010-05-11
P1433published inNucleic Acids ResearchQ135122
P1476titleExperimental identification and characterization of 97 novel npcRNA candidates in Salmonella enterica serovar Typhi
P478volume38

Reverse relations

cites work (P2860)
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