Predicting antisense RNAs in the genomes of Escherichia coli and Salmonella typhimurium using promoter-search algorithm PlatProm

scientific article published in April 2006

Predicting antisense RNAs in the genomes of Escherichia coli and Salmonella typhimurium using promoter-search algorithm PlatProm is …
instance of (P31):
scholarly articleQ13442814

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P8978DBLP publication IDjournals/jbcb/OzolineD06
P356DOI10.1142/S0219720006001916
P698PubMed publication ID16819794

P2093author name stringOlga N Ozoline
Alexander A Deev
P2860cites workProximal transcribed regions of bacterial promoters have a non-random distribution of A/T tractsQ39729844
Escherichia coli promoter sequences: analysis and predictionQ41100070
Sequence alignment kernel for recognition of promoter regionsQ47446556
Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals.Q54517417
Complete genome sequence of Salmonella enterica serovar Typhimurium LT2Q22122369
Transcriptome analysis of Escherichia coli using high-density oligonucleotide probe arraysQ24537785
Detection of 5'- and 3'-UTR-derived small RNAs and cis-encoded antisense RNAs in Escherichia coliQ24556624
GadY, a small-RNA regulator of acid response genes in Escherichia coliQ24563573
MicC, a second small-RNA regulator of Omp protein expression in Escherichia coliQ24563596
Identification of novel small RNAs using comparative genomics and microarraysQ24601229
RNomics in Escherichia coli detects new sRNA species and indicates parallel transcriptional output in bacteriaQ24641843
A trans-acting RNA as a control switch in Escherichia coli: DsrA modulates function by forming alternative structuresQ24652762
A survey of small RNA-encoding genes in Escherichia coliQ24684021
Predicting non-coding RNA genes in Escherichia coli with boosted genetic programmingQ24810301
Detection of low-level promoter activity within open reading frame sequences of Escherichia coli.Q24812565
The complete genome sequence of Escherichia coli K-12Q27860542
Global analysis of small RNA and mRNA targets of HfqQ28184898
A bioinformatics based approach to discover small RNA genes in the Escherichia coli genomeQ28205081
Novel small RNA-encoding genes in the intergenic regions of Escherichia coliQ28205853
Computational identification of noncoding RNAs in E. coli by comparative genomicsQ28216022
Small RNA regulators of translation: mechanisms of action and approaches for identifying new small RNAs.Q35133724
Controlling mRNA stability and translation with small, noncoding RNAsQ35737955
An assessment of neural network and statistical approaches for prediction of E. coli promoter sitesQ35925778
P433issue2
P921main subjectEscherichia coliQ25419
Salmonella TyphimuriumQ166491
P304page(s)443-454
P577publication date2006-04-01
P1433published inJournal of Bioinformatics and Computational BiologyQ6294841
P1476titlePredicting antisense RNAs in the genomes of Escherichia coli and Salmonella typhimurium using promoter-search algorithm PlatProm
P478volume4

Reverse relations

cites work (P2860)
Q58205225Antisense transcription within the hns locus of Escherichia coli
Q48184769Contribution of bacterial promoter elements to transcription start site detection accuracy.
Q33575820Experimental identification and characterization of 97 novel npcRNA candidates in Salmonella enterica serovar Typhi
Q41936173Gains and unexpected lessons from genome-scale promoter mapping.
Q50070212Intragenic promotor-like sites in the genome of Escherichia coli discovery and functional implication
Q36715579Large-scale computational and statistical analyses of high transcription potentialities in 32 prokaryotic genomes.
Q38958313Redefining Escherichia coli σ(70) promoter elements: -15 motif as a complement of the -10 motif
Q47284764Scoring Targets of Transcription in Bacteria Rather than Focusing on Individual Binding Sites
Q30384862Translatomics combined with transcriptomics and proteomics reveals novel functional, recently evolved orphan genes in Escherichia coli O157:H7 (EHEC).

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