The challenge of regulation in a minimal photoautotroph: non-coding RNAs in Prochlorococcus

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The challenge of regulation in a minimal photoautotroph: non-coding RNAs in Prochlorococcus is …
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P356DOI10.1371/JOURNAL.PGEN.1000173
P3181OpenCitations bibliographic resource ID2560155
P932PMC publication ID2518516
P698PubMed publication ID18769676
P5875ResearchGate publication ID23234066

P50authorWolfgang René HessQ1583375
Sallie W. ChisholmQ4794852
Debbie LindellQ21258280
Matthias FutschikQ37376165
P2093author name stringClaudia Steglich
Bjoern Voss
P2860cites workPatterns and implications of gene gain and loss in the evolution of ProchlorococcusQ21092491
Identification of cyanobacterial non-coding RNAs by comparative genome analysisQ21092872
Two seemingly homologous noncoding RNAs act hierarchically to activate glmS mRNA translationQ21145881
Identification of chromosomal alpha-proteobacterial small RNAs by comparative genome analysis and detection in Sinorhizobium meliloti strain 1021Q21263198
A motif-based search in bacterial genomes identifies the ortholog of the small RNA Yfr1 in all lineages of cyanobacteriaQ21266551
Genome sequence of the cyanobacterium Prochlorococcus marinus SS120, a nearly minimal oxyphototrophic genomeQ21994448
Genome divergence in two Prochlorococcus ecotypes reflects oceanic niche differentiationQ21994463
Small RNA genes expressed from Staphylococcus aureus genomic and pathogenicity islands with specific expression among pathogenic strainsQ24530293
Transcriptional analysis of the cyanobacterial gvpABC operon in differentiated cells: occurrence of an antisense RNA complementary to three overlapping transcriptsQ69020064
Growth of prochlorococcus, a photosynthetic prokaryote, in the equatorial pacific oceanQ81221099
Antisense artifacts in transcriptome microarray experiments are resolved by actinomycin D.Q36173057
Code and context: Prochlorococcus as a model for cross-scale biologyQ36908004
Sensitive detection of bacterial transcription initiation sites and differentiation from RNA processing sites in the pheromone-induced plasmid transfer system of Enterococcus faecalisQ37441007
Genome-wide analysis of light sensing in ProchlorococcusQ39112634
Physiology and molecular phylogeny of coexisting Prochlorococcus ecotypesQ39265944
Niche-partitioning of Prochlorococcus populations in a stratified water column in the eastern North Atlantic OceanQ39482129
An internal antisense RNA regulates expression of the photosynthesis gene isiAQ24547055
Prochlorococcus, a marine photosynthetic prokaryote of global significanceQ24548557
Hfq is necessary for regulation by the untranslated RNA DsrAQ24548921
Detection of 5'- and 3'-UTR-derived small RNAs and cis-encoded antisense RNAs in Escherichia coliQ24556624
Toxin-antitoxin loci are highly abundant in free-living but lost from host-associated prokaryotesQ24556626
Fast and reliable prediction of noncoding RNAsQ24556645
Identification of tandem duplicate regulatory small RNAs in Pseudomonas aeruginosa involved in iron homeostasisQ24561961
The small RNA, DsrA, is essential for the low temperature expression of RpoS during exponential growth in Escherichia coliQ24562141
Identification of novel small RNAs using comparative genomics and microarraysQ24601229
RNomics in Escherichia coli detects new sRNA species and indicates parallel transcriptional output in bacteriaQ24641843
Structural analysis of aligned RNAsQ24672793
The RNA chaperone Hfq is essential for the virulence of Salmonella typhimuriumQ24683356
A dual function for a bacterial small RNA: SgrS performs base pairing-dependent regulation and encodes a functional polypeptideQ24683800
Experimental approaches to identify non-coding RNAsQ25256852
RNA expression analysis using a 30 base pair resolution Escherichia coli genome arrayQ28139158
Signal transduction cascade for regulation of RpoS: temperature regulation of DsrAQ28200768
Novel small RNA-encoding genes in the intergenic regions of Escherichia coliQ28205853
Molecular characterization of long direct repeat (LDR) sequences expressing a stable mRNA encoding for a 35-amino-acid cell-killing peptide and a cis-encoded small antisense RNA in Escherichia coliQ28214985
Computational identification of noncoding RNAs in E. coli by comparative genomicsQ28216022
The Sm-like Hfq protein increases OxyS RNA interaction with target mRNAsQ28216159
The small RNA chaperone Hfq and multiple small RNAs control quorum sensing in Vibrio harveyi and Vibrio choleraeQ28270975
Involvement of a novel transcriptional activator and small RNA in post-transcriptional regulation of the glucose phosphoenolpyruvate phosphotransferase systemQ28291273
An antisense RNA inhibits translation by competing with standby ribosomesQ28302101
Genes for small, noncoding RNAs under sporulation control in Bacillus subtilisQ28768627
Prokaryotic toxin-antitoxin stress response lociQ29615335
Hfq: a bacterial Sm-like protein that mediates RNA-RNA interactionQ29619904
The bacterial Sm-like protein Hfq: a key player in RNA transactionsQ29620062
Phosphate acquisition genes in Prochlorococcus ecotypes: evidence for genome-wide adaptationQ30820999
How to find small non-coding RNAs in bacteriaQ34473835
Genomic islands and the ecology and evolution of Prochlorococcus.Q34504656
A cyanobacterial non-coding RNA, Yfr1, is required for growth under multiple stress conditionsQ34657643
Genome-wide expression dynamics of a marine virus and host reveal features of co-evolutionQ34680343
A small non-coding RNA of the invasion gene island (SPI-1) represses outer membrane protein synthesis from the Salmonella core genomeQ34707860
An abundance of RNA regulatorsQ36161159
Cyanophages infecting the oceanic cyanobacterium ProchlorococcusQ39497375
Regulation of agr-dependent virulence genes in Staphylococcus aureus by RNAIII from coagulase-negative staphylococci.Q39569314
Constitutive Activation of the Escherichia coli Pho Regulon Upregulates rpoS Translation in an Hfq-Dependent FashionQ39997770
Antisense RNA control in bacteria, phages, and plasmidsQ40573014
Plasmid stabilization by post-segregational killingQ41506962
Compilation of all genes encoding two-component phosphotransfer signal transducers in the genome of Escherichia coliQ42659448
Rapid diversification of marine picophytoplankton with dissimilar light-harvesting structures inferred from sequences of Prochlorococcus and Synechococcus (Cyanobacteria).Q48039914
A small, stable RNA induced by oxidative stress: role as a pleiotropic regulator and antimutatorQ48047346
Analysis of natural populations of Prochlorococcus spp. in the northern Red Sea using phycoerythrin gene sequencesQ48236177
RnaViz 2: an improved representation of RNA secondary structure.Q48263846
Two distinct types of 6S RNA in Prochlorococcus.Q52924930
Identification of a furA cis antisense RNA in the cyanobacterium Anabaena sp. PCC 7120.Q54474349
Fast folding and comparison of RNA secondary structuresQ56272105
Physiology and molecular phylogeny of coexisting Prochlorococcus ecotypesQ59069640
Culturing the marine cyanobacterium ProchlorococcusQ59341981
P275copyright licenseCreative Commons Attribution 4.0 InternationalQ20007257
P6216copyright statuscopyrightedQ50423863
P433issue8
P407language of work or nameEnglishQ1860
P304page(s)e1000173
P577publication date2008-08-29
P1433published inPLOS GeneticsQ1893441
P1476titleThe challenge of regulation in a minimal photoautotroph: non-coding RNAs in Prochlorococcus
P478volume4

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