| scholarly article | Q13442814 |
| P6179 | Dimensions Publication ID | 1041039430 |
| P356 | DOI | 10.1038/ISMEJ.2014.60 |
| P932 | PMC publication ID | 4817614 |
| P698 | PubMed publication ID | 24739623 |
| P5875 | ResearchGate publication ID | 261749050 |
| P2093 | author name string | Stephen J Giovannoni | |
| Ben Temperton | |||
| J Cameron Thrash | |||
| P2860 | cites work | Patterns and implications of gene gain and loss in the evolution of Prochlorococcus | Q21092491 |
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| Identification of candidate structured RNAs in the marine organism 'Candidatus Pelagibacter ubique' | Q21283761 | ||
| Genome divergence in two Prochlorococcus ecotypes reflects oceanic niche differentiation | Q21994463 | ||
| Accelerated evolution associated with genome reduction in a free-living prokaryote | Q21999766 | ||
| Genome Streamlining in a Cosmopolitan Oceanic Bacterium | Q22065795 | ||
| The Bacterial Species Challenge: Making Sense of Genetic and Ecological Diversity | Q22065860 | ||
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| Selfish DNA: the ultimate parasite | Q22122417 | ||
| Selfish genes, the phenotype paradigm and genome evolution | Q22122418 | ||
| Evolutionary Rate at the Molecular Level | Q22122432 | ||
| Regulatory RNAs in bacteria | Q24595082 | ||
| Metagenomics uncovers a new group of low GC and ultra-small marine Actinobacteria | Q24630565 | ||
| Enigmatic, ultrasmall, uncultivated Archaea. | Q24631351 | ||
| Unique glycine-activated riboswitch linked to glycine-serine auxotrophy in SAR11 | Q24650852 | ||
| Genomics of bacteria and archaea: the emerging dynamic view of the prokaryotic world | Q24653367 | ||
| The small genome of an abundant coastal ocean methylotroph | Q28275384 | ||
| Streamlining and core genome conservation among highly divergent members of the SAR11 clade | Q28275390 | ||
| Differential expression of 10 sigma factor genes in Mycobacterium tuberculosis | Q28486484 | ||
| The Black Queen Hypothesis: evolution of dependencies through adaptive gene loss | Q28730844 | ||
| The origins of genome complexity | Q29547507 | ||
| Regulation of bacterial gene expression by riboswitches | Q29617849 | ||
| Accurate genome relative abundance estimation based on shotgun metagenomic reads | Q31043348 | ||
| Natural variation in SAR11 marine bacterioplankton genomes inferred from metagenomic data | Q31135634 | ||
| Pirellula and OM43 are among the dominant lineages identified in an Oregon coast diatom bloom | Q33251973 | ||
| Seasonal dynamics of SAR11 populations in the euphotic and mesopelagic zones of the northwestern Sargasso Sea. | Q33389170 | ||
| Seasonality and vertical structure of microbial communities in an ocean gyre | Q33459805 | ||
| The GAAS metagenomic tool and its estimations of viral and microbial average genome size in four major biomes | Q33518458 | ||
| The systemic imprint of growth and its uses in ecological (meta)genomics | Q33525509 | ||
| Transcriptional and translational regulatory responses to iron limitation in the globally distributed marine bacterium Candidatus pelagibacter ubique | Q33576952 | ||
| Comparative metagenomics of bathypelagic plankton and bottom sediment from the Sea of Marmara | Q33644210 | ||
| Expanding roles for metabolite-sensing regulatory RNAs | Q33758515 | ||
| Dependence of the cyanobacterium Prochlorococcus on hydrogen peroxide scavenging microbes for growth at the ocean's surface. | Q33815345 | ||
| Formation of pilin in Pseudomonas aeruginosa requires the alternative sigma factor (RpoN) of RNA polymerase | Q33844236 | ||
| Deletional bias and the evolution of bacterial genomes | Q33955011 | ||
| Metagenomic insights into the evolution, function, and complexity of the planktonic microbial community of Lake Lanier, a temperate freshwater ecosystem | Q33963361 | ||
| rRNA operon copy number reflects ecological strategies of bacteria | Q33986862 | ||
| Determination of DNA content of aquatic bacteria by flow cytometry | Q33989295 | ||
| One carbon metabolism in SAR11 pelagic marine bacteria | Q34009058 | ||
| Nutrient uptake by microorganisms according to kinetic parameters from theory as related to cytoarchitecture | Q34010024 | ||
| Resolution of Prochlorococcus and Synechococcus ecotypes by using 16S-23S ribosomal DNA internal transcribed spacer sequences. | Q34050489 | ||
| Genomic insights to SAR86, an abundant and uncultivated marine bacterial lineage | Q34101446 | ||
| Cultivation of the ubiquitous SAR11 marine bacterioplankton clade. | Q34143482 | ||
| SAR11 clade dominates ocean surface bacterioplankton communities. | Q34165899 | ||
| Extreme genome reduction in symbiotic bacteria | Q34230656 | ||
| Microbial interactions: from networks to models | Q34337828 | ||
| Small genomes and sparse metabolisms of sediment-associated bacteria from four candidate phyla | Q34379533 | ||
| Genetic diversity in Sargasso Sea bacterioplankton | Q34540053 | ||
| Productivity and salinity structuring of the microplankton revealed by comparative freshwater metagenomics | Q34617650 | ||
| SAR11 marine bacteria require exogenous reduced sulphur for growth | Q34761326 | ||
| The consequences of genetic drift for bacterial genome complexity | Q34985390 | ||
| Environmental proteomics of microbial plankton in a highly productive coastal upwelling system | Q35018884 | ||
| The significance of nitrogen cost minimization in proteomes of marine microorganisms | Q35634602 | ||
| Performance of the translational apparatus varies with the ecological strategies of bacteria | Q35759706 | ||
| Streamlining and simplification of microbial genome architecture | Q36528800 | ||
| Discovery of a SAR11 growth requirement for thiamin's pyrimidine precursor and its distribution in the Sargasso Sea. | Q36756326 | ||
| Growth temperature and genome size in bacteria are negatively correlated, suggesting genomic streamlining during thermal adaptation | Q36905240 | ||
| Prevalent genome streamlining and latitudinal divergence of planktonic bacteria in the surface ocean | Q37010628 | ||
| The genomic basis of trophic strategy in marine bacteria | Q37337800 | ||
| Toward minimal bacterial cells: evolution vs. design | Q37344926 | ||
| Proteomic and transcriptomic analyses of "Candidatus Pelagibacter ubique" describe the first PII-independent response to nitrogen limitation in a free-living Alphaproteobacterium | Q37408436 | ||
| Prochlorococcus: advantages and limits of minimalism | Q37818053 | ||
| Latitudinal distribution of prokaryotic picoplankton populations in the Atlantic Ocean. | Q39435342 | ||
| Quantitative metagenomic analyses based on average genome size normalization | Q41855147 | ||
| Eubacterial sigma-factors | Q42464079 | ||
| Dynamics of the SAR11 bacterioplankton lineage in relation to environmental conditions in the oligotrophic North Pacific subtropical gyre | Q42623321 | ||
| High intraspecific recombination rate in a native population of Candidatus pelagibacter ubique (SAR11). | Q42630785 | ||
| Prediction of effective genome size in metagenomic samples | Q42876397 | ||
| Biochemical basis for whole-cell uptake kinetics: specific affinity, oligotrophic capacity, and the meaning of the michaelis constant | Q42926370 | ||
| Nutrient requirements for growth of the extreme oligotroph 'Candidatus Pelagibacter ubique' HTCC1062 on a defined medium | Q43242802 | ||
| Transport functions dominate the SAR11 metaproteome at low-nutrient extremes in the Sargasso Sea. | Q43529777 | ||
| Fermentation, hydrogen, and sulfur metabolism in multiple uncultivated bacterial phyla | Q43857910 | ||
| Microeconomic principles explain an optimal genome size in bacteria | Q47393743 | ||
| Causes of insertion sequences abundance in prokaryotic genomes | Q48082049 | ||
| Did the loss of sigma factors initiate pseudogene accumulation in M. leprae? | Q52549443 | ||
| Synergistic metabolism of a broad range of C1 compounds in the marine methylotrophic bacterium HTCC2181. | Q53112032 | ||
| Biogeochemical Controls and Feedbacks on Ocean Primary Production | Q53151192 | ||
| Cooperation of group 2 sigma factors, SigD and SigE for light-induced transcription in the cyanobacterium Synechocystis sp. PCC 6803. | Q54444644 | ||
| The Dip Test of Unimodality | Q55894425 | ||
| Prochlorococcus marinus nov. gen. nov. sp.: an oxyphototrophic marine prokaryote containing divinyl chlorophyll a and b | Q56391435 | ||
| No evidence for elemental-based streamlining of prokaryotic genomes | Q57618425 | ||
| Rapid biological oxidation of methanol in the tropical Atlantic: significance as a microbial carbon source | Q63488678 | ||
| P433 | issue | 8 | |
| P921 | main subject | microbial ecology | Q3054637 |
| P6104 | maintained by WikiProject | WikiProject Ecology | Q10818384 |
| P304 | page(s) | 1553-1565 | |
| P577 | publication date | 2014-04-17 | |
| P1433 | published in | The ISME Journal | Q7741240 |
| P1476 | title | Implications of streamlining theory for microbial ecology | |
| P478 | volume | 8 |
| Q93184549 | A Foraging Mandala for Aquatic Microorganisms |
| Q28608100 | A Model of Genome Size Evolution for Prokaryotes in Stable and Fluctuating Environments. |
| Q34047569 | A Viral Immunity Chromosome in the Marine Picoeukaryote, Ostreococcus tauri |
| Q57253963 | A glutamine riboswitch is a key element for the regulation of glutamine synthetase in cyanobacteria |
| Q28084823 | A network-based approach to disturbance transmission through microbial interactions |
| Q89170777 | A strong link between marine microbial community composition and function challenges the idea of functional redundancy |
| Q30637821 | A taxonomic framework for emerging groups of ecologically important marine gammaproteobacteria based on the reconstruction of evolutionary relationships using genome-scale data |
| Q36324836 | Absence of genome reduction in diverse, facultative endohyphal bacteria |
| Q41606098 | Adaptation of Surface-Associated Bacteria to the Open Ocean: A Genomically Distinct Subpopulation of Phaeobacter gallaeciensis Colonizes Pacific Mesozooplankton |
| Q35002675 | Adaptation of an abundant Roseobacter RCA organism to pelagic systems revealed by genomic and transcriptomic analyses |
| Q28596229 | An Enrichment of CRISPR and Other Defense-Related Features in Marine Sponge-Associated Microbial Metagenomes |
| Q35887309 | Are freshwater bacterioplankton indifferent to variable types of amino acid substrates? |
| Q36973186 | Artificial Seawater Media Facilitate Cultivating Members of the Microbial Majority from the Gulf of Mexico. |
| Q46461067 | Assessment of the bimodality in the distribution of bacterial genome sizes |
| Q35693109 | Auxotrophy and intrapopulation complementary in the 'interactome' of a cultivated freshwater model community. |
| Q35317726 | Average genome size estimation improves comparative metagenomics and sheds light on the functional ecology of the human microbiome |
| Q33715407 | Bacterial Biogeography across the Amazon River-Ocean Continuum. |
| Q51123321 | Bacterial evolution: Genomics of metabolic trade-offs. |
| Q46237897 | Balanced Fertilization Decreases Environmental Filtering on Soil Bacterial Community Assemblage in North China |
| Q28069618 | Beyond 16S rRNA Community Profiling: Intra-Species Diversity in the Gut Microbiota |
| Q41688854 | Beyond the Black Queen Hypothesis |
| Q61805695 | Bioinformatics Analysis of Metabolism Pathways of Archaeal Energy Reserves |
| Q103836662 | Building genomes to understand biology |
| Q33812805 | Candidatus Mycoplasma girerdii replicates, diversifies, and co-occurs with Trichomonas vaginalis in the oral cavity of a premature infant |
| Q64102319 | Carbon Fate and Flux in under Nitrogen Limitation |
| Q48250962 | Carbon limitation drives GC content evolution of a marine bacterium in an individual-based genome-scale model. |
| Q30402725 | Changes in Microbial Plankton Assemblages Induced by Mesoscale Oceanographic Features in the Northern Gulf of Mexico |
| Q38832015 | Chemotaxonomic characterisation of the thaumarchaeal lipidome |
| Q91451074 | Co-culture and biogeography of Prochlorococcus and SAR11 |
| Q36875170 | Co-occurrence Analysis of Microbial Taxa in the Atlantic Ocean Reveals High Connectivity in the Free-Living Bacterioplankton |
| Q35844047 | Co-occurrence of resistance genes to antibiotics, biocides and metals reveals novel insights into their co-selection potential. |
| Q38679921 | Comparative Genomics Reveals High Genomic Diversity in the Genus Photobacterium |
| Q36592461 | Comparative Genomics between Two Xenorhabdus bovienii Strains Highlights Differential Evolutionary Scenarios within an Entomopathogenic Bacterial Species |
| Q61807755 | Comparative genomics of Bacteria commonly identified in the built environment |
| Q38913783 | Comparative genomics reveals surprising divergence of two closely related strains of uncultivated UCYN-A cyanobacteria. |
| Q58720836 | Complete genome of streamlined marine actinobacterium Pontimonas salivibrio strain CL-TW6 adapted to coastal planktonic lifestyle |
| Q54936179 | Core non-coding RNAs of Piscirickettsia salmonis. |
| Q91899996 | Culturing the ubiquitous freshwater actinobacterial acI lineage by supplying a biochemical 'helper' catalase |
| Q41696192 | DESMAN: a new tool for de novo extraction of strains from metagenomes. |
| Q59807105 | Depth and Dissolved Organic Carbon Shape Microbial Communities in Surface Influenced but Not Ancient Saline Terrestrial Aquifers |
| Q55077775 | Depth-Resolved Distribution of Particle-Attached and Free-Living Bacterial Communities in the Water Column of the New Britain Trench. |
| Q28596341 | Did Viruses Evolve As a Distinct Supergroup from Common Ancestors of Cells? |
| Q49631161 | Differential NtcA Responsiveness to 2-Oxoglutarate Underlies the Diversity of C/N Balance Regulation in Prochlorococcus. |
| Q89665207 | Disentangling the impact of environmental and phylogenetic constraints on prokaryotic within-species diversity |
| Q51157423 | Dispersing misconceptions and identifying opportunities for the use of 'omics' in soil microbial ecology. |
| Q50017019 | Distribution Patterns of Microbial Community Structure Along a 7000-Mile Latitudinal Transect from the Mediterranean Sea Across the Atlantic Ocean to the Brazilian Coastal Sea. |
| Q55128112 | Divergent Responses of the Diazotrophic Microbiome to Elevated CO2 in Two Rice Cultivars. |
| Q64099878 | Divergent microbial communities in groundwater and overlying soils exhibit functional redundancy for plant-polysaccharide degradation |
| Q103805583 | Diversification of methanogens into hyperalkaline serpentinizing environments through adaptations to minimize oxidant limitation |
| Q55311422 | Diversity and community structure of marine microbes around the Benham Rise underwater plateau, northeastern Philippines. |
| Q64262706 | Does the Chemodiversity of Bacterial Exometabolomes Sustain the Chemodiversity of Marine Dissolved Organic Matter? |
| Q41011349 | Ecological Energetic Perspectives on Responses of Nitrogen-Transforming Chemolithoautotrophic Microbiota to Changes in the Marine Environment. |
| Q39492472 | Ecological Genomics of the Uncultivated Marine Roseobacter Lineage CHAB-I-5. |
| Q58611530 | Ecological selection for small microbial genomes along a temperate-to-thermal soil gradient |
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| Q47631000 | Environmental factors influencing the development and spread of antibiotic resistance |
| Q98952089 | Environmental stability impacts the differential sensitivity of marine microbiomes to increases in temperature and acidity |
| Q38577518 | Eukaryotes first: how could that be? |
| Q91776807 | Evolution in action: habitat transition from sediment to the pelagial leads to genome streamlining in Methylophilaceae |
| Q38327856 | Evolution of small prokaryotic genomes |
| Q34592403 | Evolutionary ecology of the marine Roseobacter clade |
| Q40870401 | Evolutionary origin of a streamlined marine bacterioplankton lineage |
| Q46352624 | Excess of non-conservative amino acid changes in marine bacterioplankton lineages with reduced genomes. |
| Q34047612 | Experimental Evolution of Metabolic Dependency in Bacteria. |
| Q37334657 | Exploiting rRNA operon copy number to investigate bacterial reproductive strategies |
| Q94474382 | Exploring the fitness benefits of genome reduction in Escherichia coli by a selection-driven approach |
| Q57470288 | Factors driving effective population size and pan-genome evolution in bacteria |
| Q54960111 | Fertilization shapes a well-organized community of bacterial decomposers for accelerated paddy straw degradation. |
| Q90947369 | Following the terrestrial tracks of Caulobacter - redefining the ecology of a reputed aquatic oligotroph |
| Q90220133 | Functional Microbial Features Driving Community Assembly During Seed Germination and Emergence |
| Q61798913 | Gene Expansion and Positive Selection as Bacterial Adaptations to Oligotrophic Conditions |
| Q36052601 | Gene Loss and Horizontal Gene Transfer Contributed to the Genome Evolution of the Extreme Acidophile "Ferrovum". |
| Q100395289 | Gene loss through pseudogenization contributes to the ecological diversification of a generalist Roseobacter lineage |
| Q110532898 | Genetic detection of freshwater harmful algal blooms: A review focused on the use of environmental DNA (eDNA) in Microcystis aeruginosa and Prymnesium parvum |
| Q97545476 | Genome analyses provide insights into the evolution and adaptation of the eukaryotic Picophytoplankton Mychonastes homosphaera |
| Q39230888 | Genome reduction in an abundant and ubiquitous soil bacterium 'Candidatus Udaeobacter copiosus'. |
| Q58573013 | Genome-Based Analysis Reveals the Taxonomy and Diversity of the Family |
| Q91670498 | Genome-Wide Identification of Myxobacterial Predation Genes and Demonstration of Formaldehyde Secretion as a Potentially Predation-Resistant Trait of Pseudomonas aeruginosa |
| Q41336359 | Genome-based exploration of the specialized metabolic capacities of the genus Rhodococcus |
| Q47822656 | Genomes of Novel Microbial Lineages Assembled from the Sub-Ice Waters of Lake Baikal. |
| Q41451585 | Genomes of planktonic Acidimicrobiales: widening horizons for marine Actinobacteria by metagenomics |
| Q92989361 | Genomic adaptations in information processing underpin trophic strategy in a whole-ecosystem nutrient enrichment experiment |
| Q51146718 | Genomic changes associated with the evolutionary transitions of Nostoc to a plant symbiont. |
| Q36534646 | Global metagenomic survey reveals a new bacterial candidate phylum in geothermal springs |
| Q39462618 | Global occurrence and heterogeneity of the Roseobacter-clade species Ruegeria mobilis |
| Q28555227 | Glycoside Hydrolases across Environmental Microbial Communities |
| Q36700356 | Growth rates and rRNA content of four marine bacteria in pure cultures and in the Delaware estuary |
| Q90745686 | Hiding in Plain Sight: The Globally Distributed Bacterial Candidate Phylum PAUC34f |
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| Q55326387 | In Silico Genome-Wide Analysis Reveals the Potential Links Between Core Genome of Acidithiobacillus thiooxidans and Its Autotrophic Lifestyle. |
| Q30379530 | In silico screening for candidate chassis strains of free fatty acid-producing cyanobacteria. |
| Q51561384 | Indispensability of Horizontally Transferred Genes and Its Impact on Bacterial Genome Streamlining. |
| Q93037454 | Influence of Substrate Concentration on the Culturability of Heterotrophic Soil Microbes Isolated by High-Throughput Dilution-to-Extinction Cultivation |
| Q46158700 | Intrahost Genetic Diversity of Bacterial Symbionts Exhibits Evidence of Mixed Infections and Recombinant Haplotypes |
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| Q47316419 | Letting go: bacterial genome reduction solves the dilemma of adapting to predation mortality in a substrate-restricted environment |
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| Q90571649 | Linking regional shifts in microbial genome adaptation with surface ocean biogeochemistry |
| Q35840702 | Lipid remodelling is a widespread strategy in marine heterotrophic bacteria upon phosphorus deficiency. |
| Q38841444 | Losing Complexity: The Role of Simplification in Macroevolution |
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| Q35814319 | Microbial metagenomes from three aquifers in the Fennoscandian shield terrestrial deep biosphere reveal metabolic partitioning among populations |
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| Q38279790 | Microevolution Analysis of Bacillus coahuilensis Unveils Differences in Phosphorus Acquisition Strategies and Their Regulation |
| Q91875282 | Microsporidia with Vertical Transmission Were Likely Shaped by Nonadaptive Processes |
| Q54968604 | Model Communities Hint at Promiscuous Metabolic Linkages between Ubiquitous Free-Living Freshwater Bacteria. |
| Q90376461 | Model Microbial Consortia as Tools for Understanding Complex Microbial Communities |
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| Q92855518 | Niche differentiation among annually recurrent coastal Marine Group II Euryarchaeota |
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| Q39387886 | Nitrogen cost minimization is promoted by structural changes in the transcriptome of N-deprived Prochlorococcus cells |
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| Q57465829 | On the deformability of an empirical fitness landscape by microbial evolution |
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| Q33735731 | Sustaining Rare Marine Microorganisms: Macroorganisms As Repositories and Dispersal Agents of Microbial Diversity |
| Q46614217 | Symbiotic relationship analysis of predominant bacteria in a lab-scale anammox UASB bioreactor |
| Q58699042 | The Cost of Metabolic Interactions in Symbioses between Insects and Bacteria with Reduced Genomes |
| Q58111704 | The Distinctive Regulation of Cyanobacterial Glutamine Synthetase |
| Q33736659 | The Evolution of Bacterial Genome Architecture |
| Q42694306 | The Exometabolome of Two Model Strains of the Roseobacter Group: A Marketplace of Microbial Metabolites |
| Q50590238 | The abundant marine bacterium Pelagibacter simultaneously catabolizes dimethylsulfoniopropionate to the gases dimethyl sulfide and methanethiol. |
| Q26747730 | The bright side of microbial dark matter: lessons learned from the uncultivated majority |
| Q42314486 | The effect of extrinsic mortality on genome size evolution in prokaryotes. |
| Q49482753 | The effect of metabolic stress on genome stability of a synthetic biology chassis Escherichia coli K12 strain. |
| Q37635410 | The first complete genome sequences of the acI lineage, the most abundant freshwater Actinobacteria, obtained by whole-genome-amplification of dilution-to-extinction cultures. |
| Q61449733 | The genetic diversity and evolution of diatom-diazotroph associations highlights traits favoring symbiont integration |
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| Q35867130 | The global ocean microbiome |
| Q35774441 | The physiology and ecological implications of efficient growth. |
| Q35869002 | The reduced genomes of Parcubacteria (OD1) contain signatures of a symbiotic lifestyle |
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| Q54988423 | Unique Features and Anti-microbial Targeting of Folate- and Flavin-Dependent Methyltransferases Required for Accurate Maintenance of Genetic Information. |
| Q118110255 | Vagococcus luciliae sp. nov., isolated from the common green bottle fly Lucilia sericata |
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| Q35489225 | What difference does it make if viruses are strain-, rather than species-specific? |
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