Hikarchaeia demonstrate an intermediate stage in the methanogen-to-halophile transition

scientific article published on 30 October 2020

Hikarchaeia demonstrate an intermediate stage in the methanogen-to-halophile transition is …
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P819ADS bibcode2020NatCo..11.5490M
P356DOI10.1038/S41467-020-19200-2
P698PubMed publication ID33127909

P50authorTom A. WilliamsQ37374539
Julian VossebergQ55135813
Anja SpangQ56486892
Max Emil SchönQ57914888
Thijs EttemaQ63168662
P2093author name stringJoran Martijn
Anders E Lind
P2860cites workRooting the domain archaea by phylogenomic analysis supports the foundation of the new kingdom ProteoarchaeotaQ26782023
MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and UsabilityQ27860817
Halophilic adaptation of enzymesQ28144061
Independent genome reduction and phylogenetic reclassification of the oceanic SAR11 cladeQ28247426
IQ-TREE: a fast and effective stochastic algorithm for estimating maximum-likelihood phylogeniesQ28250973
Genome-scale phylogenetic analysis finds extensive gene transfer among fungiQ28607622
CONSEL: for assessing the confidence of phylogenetic tree selectionQ29547244
Trimmomatic: a flexible trimmer for Illumina sequence dataQ29547278
An approximately unbiased test of phylogenetic tree selectionQ29547508
Accelerated Profile HMM SearchesQ29547576
trimAl: a tool for automated alignment trimming in large-scale phylogenetic analysesQ29547690
Prokka: rapid prokaryotic genome annotationQ29616643
eggNOG 4.5: a hierarchical orthology framework with improved functional annotations for eukaryotic, prokaryotic and viral sequencesQ30002335
Prokaryotic phylogenetic diversity and corresponding geochemical data of the brine-seawater interface of the Shaban Deep, Red Sea.Q30750892
Application of the MAFFT sequence alignment program to large data-reexamination of the usefulness of chained guide treesQ31112458
phyloSkeleton: taxon selection, data retrieval and marker identification for phylogenomicsQ31153174
Mechanism of guanine-specific DNA damage by oxidative stress and its role in carcinogenesis and agingQ32062951
Ultra-fast sequence clustering from similarity networks with SiLiX.Q33879784
Osmoadaptive strategies of the archaeon Halococcus hamelinensis isolated from a hypersaline stromatolite environmentQ33978768
A methylaspartate cycle in haloarchaeaQ34025432
Understanding the adaptation of Halobacterium species NRC-1 to its extreme environment through computational analysis of its genome sequenceQ34094195
Living with salt: metabolic and phylogenetic diversity of archaea inhabiting saline ecosystems.Q34160372
Efficient exploration of the space of reconciled gene treesQ34362570
Extending the conserved phylogenetic core of archaea disentangles the evolution of the third domain of lifeQ34461696
Genomic expansion of domain archaea highlights roles for organisms from new phyla in anaerobic carbon cycling.Q34463953
Quinol:fumarate oxidoreductases and succinate:quinone oxidoreductases: phylogenetic relationships, metal centres and membrane attachmentQ34501877
Phylogenetically driven sequencing of extremely halophilic archaea reveals strategies for static and dynamic osmo-responseQ34505487
Near-optimal probabilistic RNA-seq quantificationQ34520743
Evolution of the ArchaeaQ34776722
Origins of major archaeal clades correspond to gene acquisitions from bacteriaQ34848019
Life at low water activityQ35214077
Binning metagenomic contigs by coverage and compositionQ35251310
Expanded microbial genome coverage and improved protein family annotation in the COG databaseQ35254493
The significance of nitrogen cost minimization in proteomes of marine microorganismsQ35634602
Ocean plankton. Structure and function of the global ocean microbiomeQ35638921
The two-domain tree of life is linked to a new root for the ArchaeaQ35669286
AMAS: a fast tool for alignment manipulation and computing of summary statisticsQ35911671
Ultraviolet radiation-mediated damage to cellular DNA.Q36062298
IMNGS: A comprehensive open resource of processed 16S rRNA microbial profiles for ecology and diversity studiesQ36142070
Discovery of extremely halophilic, methyl-reducing euryarchaea provides insights into the evolutionary origin of methanogenesisQ36384329
Acquisition of 1,000 eubacterial genes physiologically transformed a methanogen at the origin of HaloarchaeaQ36483735
Implications of streamlining theory for microbial ecologyQ36756338
Nitrogen metabolism in haloarchaeaQ36789906
High level of intergenera gene exchange shapes the evolution of haloarchaea in an isolated Antarctic lakeQ37240522
Trehalose/2-sulfotrehalose biosynthesis and glycine-betaine uptake are widely spread mechanisms for osmoadaptation in the HalobacterialesQ37595141
Life at high salt concentrations, intracellular KCl concentrations, and acidic proteomesQ38160843
Physiological aspects of UV-excitation of DNA.Q38201689
Fast genome-wide functional annotation through orthology assignment by eggNOG-mapperQ38434106
How do divergent ecological strategies emerge among marine bacterioplankton lineages?Q38519050
The growing tree of Archaea: new perspectives on their diversity, evolution and ecologyQ38640964
ModelFinder: fast model selection for accurate phylogenetic estimatesQ38798531
metaSPAdes: a new versatile metagenomic assemblerQ38905159
Asgard archaea illuminate the origin of eukaryotic cellular complexity.Q39026043
VSEARCH: a versatile open source tool for metagenomicsQ39249686
A novel mode of sensory transduction in archaea: binding protein-mediated chemotaxis towards osmoprotectants and amino acidsQ39644892
Osmotically induced response in representatives of halophilic prokaryotes: the bacterium Halomonas elongata and the archaeon Haloferax volcaniiQ39847000
Gene Acquisitions from Bacteria at the Origins of Major Archaeal Clades Are Vastly OverestimatedQ40351868
Phylogeny of Rieske/cytb complexes with a special focus on the Haloarchaeal enzymes.Q41928151
DNA Repair and Photoprotection: Mechanisms of Overcoming Environmental Ultraviolet Radiation Exposure in Halophilic ArchaeaQ42369787
Ion metabolism in a Halobacterium. I. Influence of age of culture on intracellular concentrationsQ42957843
Empirical profile mixture models for phylogenetic reconstructionQ44124792
The comparison of the confidence regions in phylogenyQ44911813
PhyloBayes MPI: phylogenetic reconstruction with infinite mixtures of profiles in a parallel environmentQ46598611
UFBoot2: Improving the Ultrafast Bootstrap Approximation.Q47403608
Genomic inference of the metabolism of cosmopolitan subsurface Archaea, HadesarchaeaQ48090876
A novel haloarchaeal-related lineage is widely distributed in deep oceanic regionsQ48378371
Guided tree topology proposals for Bayesian phylogenetic inference.Q51541187
On reduced amino acid alphabets for phylogenetic inference.Q51909802
Deep mitochondrial origin outside the sampled alphaproteobacteria.Q52562743
Hundreds of novel composite genes and chimeric genes with bacterial origins contributed to haloarchaeal evolution.Q55416513
Tara Oceans studies plankton at planetary scaleQ56917885
RAxML-NG: a fast, scalable and user-friendly tool for maximum likelihood phylogenetic inferenceQ64386198
miComplete: weighted quality evaluation of assembled microbial genomesQ90025058
EPA-ng: Massively Parallel Evolutionary Placement of Genetic SequencesQ91235071
Methods for automatic reference trees and multilevel phylogenetic placementQ91250223
Evolutionary placement of MethanonatronarchaeiaQ91907903
Reply to 'Evolutionary placement of Methanonatronarchaeia'Q91907920
P433issue1
P304page(s)5490
P577publication date2020-10-30
P1433published inNature CommunicationsQ573880
P1476titleHikarchaeia demonstrate an intermediate stage in the methanogen-to-halophile transition
P478volume11

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