| scholarly article | Q13442814 |
| P356 | DOI | 10.1101/GR.190201 |
| P8608 | Fatcat ID | release_5tv5asbxfza35mg4cyd7wx5eha |
| P932 | PMC publication ID | 311145 |
| P698 | PubMed publication ID | 11591641 |
| P5875 | ResearchGate publication ID | 11757592 |
| P50 | author | Steven Salzberg | Q7248791 |
| P2093 | author name string | L Hood | |
| S DasSarma | |||
| S P Kennedy | |||
| W V Ng | |||
| P2860 | cites work | Genome sequence of Halobacterium species NRC-1 | Q22066243 |
| Evidence for lateral gene transfer between Archaea and Bacteria from genome sequence of Thermotoga maritima | Q22122435 | ||
| Selfish operons: horizontal transfer may drive the evolution of gene clusters | Q24533213 | ||
| The structural basis for the oriented assembly of a TBP/TFB/promoter complex | Q24644960 | ||
| The complete atomic structure of the large ribosomal subunit at 2.4 A resolution | Q27626400 | ||
| Structural features that stabilize halophilic malate dehydrogenase from an archaebacterium | Q27647913 | ||
| Structure and mechanism of DNA topoisomerase II | Q27732221 | ||
| The 2.1-A crystal structure of an archaeal preinitiation complex: TATA-box-binding protein/transcription factor (II)B core/TATA-box | Q27738757 | ||
| The COG database: a tool for genome-scale analysis of protein functions and evolution | Q27936664 | ||
| Homologous gene knockout in the archaeon Halobacterium salinarum with ura3 as a counterselectable marker | Q28144638 | ||
| ATP-dependent recognition of eukaryotic origins of DNA replication by a multiprotein complex | Q28241786 | ||
| Maximizing transcription efficiency causes codon usage bias | Q28769433 | ||
| Phylogenetic classification and the universal tree | Q29547749 | ||
| Genome phylogeny based on gene content | Q29617415 | ||
| Asymmetric substitution patterns in the two DNA strands of bacteria | Q29618276 | ||
| Snapshot of a large dynamic replicon in a halophilic archaeon: megaplasmid or minichromosome? | Q31958293 | ||
| Early fixation of an optimal genetic code | Q33896212 | ||
| Lateral gene transfer in prokaryotes | Q33904579 | ||
| Microbial genes in the human genome: lateral transfer or gene loss? | Q33947327 | ||
| Status of genome projects for nonpathogenic bacteria and archaea. | Q34052441 | ||
| Retinylidene proteins: structures and functions from archaea to humans. | Q34059729 | ||
| Salt-dependent properties of proteins from extremely halophilic bacteria | Q34068337 | ||
| Correlation of GC content with replication timing and repair mechanisms in weakly expressed E.coli genes | Q34310900 | ||
| Genomic and genetic dissection of an archaeal regulon | Q34471104 | ||
| Base composition skews, replication orientation, and gene orientation in 12 prokaryote genomes | Q34482960 | ||
| DNA gyrase: structure and function. | Q34507230 | ||
| Wild-type gas vesicle formation requires at least ten genes in the gvp gene cluster of Halobacterium halobium plasmid pNRC100 | Q35983916 | ||
| Conservation of chromosomal arrangement among three strains of the genetically unstable archaeon Halobacterium salinarium | Q35984062 | ||
| Base Sequence Homology and Renaturation Studies of the Deoxyribonucleic Acid of Extremely Halophilic Bacteria | Q36817625 | ||
| Whole genome-based phylogenetic analysis of free-living microorganisms | Q39729408 | ||
| Halotolerance of Methanobacterium thermoautotrophicum delta H and Marburg | Q39932058 | ||
| Structure of the gas vesicle plasmid in Halobacterium halobium inversion isomers, inverted repeats, and insertion sequences | Q39942068 | ||
| Life in unusual environments: progress in understanding the structure and function of enzymes from extreme halophilic bacteria | Q40511385 | ||
| Genome organization in Halobacterium halobium: a 70 kb island of more (AT) rich DNA in the chromosome | Q43018625 | ||
| Unusual physical organization of the Halobacterium genome | Q43021544 | ||
| Electrostatic contributions to the stability of halophilic proteins | Q43025485 | ||
| brp and blh are required for synthesis of the retinal cofactor of bacteriorhodopsin in Halobacterium salinarum | Q43510596 | ||
| Photoreactivation in Halobacterium cutirubrum | Q44115201 | ||
| Intracellular pH of halobacteria can be determined by the fluorescent dye 2′, 7′-bis(carboxyethyl)-5(6)-carboxyfluorescein | Q46006808 | ||
| Skewed oligomers and origins of replication. | Q52232869 | ||
| MucAB but not UmuDC proteins enhance -2 frameshift mutagenesis induced by N-2-acetylaminofluorene at alternating GC sequences. | Q54625085 | ||
| Bacterial Mode of Replication with Eukaryotic-Like Machinery in a Hyperthermophilic Archaeon | Q60134797 | ||
| Biosynthesis of the purple membrane of halobacteria | Q67526130 | ||
| Mechanisms of genetic variability in Halobacterium halobium: the purple membrane and gas vesicle mutations | Q69348512 | ||
| Identification and analysis of the gas vesicle gene cluster on an unstable plasmid of Halobacterium halobium | Q72840622 | ||
| Compositional correlation studies among the three different codon positions in 12 bacterial genomes | Q73226313 | ||
| Site-specific oxidation at GG and GGG sequences in double-stranded DNA by benzoyl peroxide as a tumor promoter | Q73292896 | ||
| Is gene expression in Halobacterium NRC-1 regulated by multiple TBP and TFB transcription factors? | Q73874047 | ||
| Influence of genomic G+C content on average amino-acid composition of proteins from 59 bacterial species | Q74166780 | ||
| P433 | issue | 10 | |
| P407 | language of work or name | English | Q1860 |
| P304 | page(s) | 1641-1650 | |
| P577 | publication date | 2001-10-01 | |
| P1433 | published in | Genome Research | Q5533485 |
| P1476 | title | Understanding the adaptation of Halobacterium species NRC-1 to its extreme environment through computational analysis of its genome sequence | |
| P478 | volume | 11 |
| Q38635649 | A blueprint of ectoine metabolism from the genome of the industrial producer Halomonas elongata DSM 2581 T. |
| Q80410682 | A comprehensive whole genome bacterial phylogeny using correlated peptide motifs defined in a high dimensional vector space |
| Q34025432 | A methylaspartate cycle in haloarchaea |
| Q48091956 | A plant locus essential for phylloquinone (vitamin K1) biosynthesis originated from a fusion of four eubacterial genes |
| Q89882296 | A potassium chloride to glycine betaine osmoprotectant switch in the extreme halophile Halorhodospira halophila |
| Q43023038 | A single aromatic core mutation converts a designed "primitive" protein from halophile to mesophile folding |
| Q30367472 | A site- and time-heterogeneous model of amino acid replacement. |
| Q41626547 | A systems view of haloarchaeal strategies to withstand stress from transition metals |
| Q36483735 | Acquisition of 1,000 eubacterial genes physiologically transformed a methanogen at the origin of Haloarchaea |
| Q37825464 | Adaptation of cells to new environments |
| Q28650030 | Adaptation, ecology, and evolution of the halophilic stromatolite archaeon Halococcus hamelinensis inferred through genome analyses |
| Q37407693 | Amino acid contribution to protein solubility: Asp, Glu, and Ser contribute more favorably than the other hydrophilic amino acids in RNase Sa. |
| Q33581024 | Amino acid signatures of salinity on an environmental scale with a focus on the Dead Sea. |
| Q43207102 | Aminoacylation of an unusual tRNA(Cys) from an extreme halophile |
| Q49497270 | An Antarctic Extreme Halophile and Its Polyextremophilic Enzyme: Effects of Perchlorate Salts |
| Q34267329 | An Archaeal Chromosomal Autonomously Replicating Sequence Element from an Extreme Halophile,Halobacteriumsp. Strain NRC-1 |
| Q34311150 | An extremely halophilic proteobacterium combines a highly acidic proteome with a low cytoplasmic potassium content |
| Q34393453 | An improved genetic system for bioengineering buoyant gas vesicle nanoparticles from Haloarchaea. |
| Q30353466 | Analysis of protein solvent interactions in glucose dehydrogenase from the extreme halophile Haloferax mediterranei. |
| Q34532849 | Archaea: an archetype for replication initiation studies? |
| Q34381254 | Archaeal genetics - the third way. |
| Q24791153 | Archaeal phylogeny based on proteins of the transcription and translation machineries: tackling the Methanopyrus kandleri paradox |
| Q24631173 | Bacterial phenylalanine and phenylacetate catabolic pathway revealed |
| Q33717561 | Biodiversity of Archaea and floral of two inland saltern ecosystems in the Alto Vinalopó Valley, Spain |
| Q36868095 | Bioengineering novel floating nanoparticles for protein and drug delivery |
| Q37293852 | Bipyrimidine Signatures as a Photoprotective Genome Strategy in G + C-rich Halophilic Archaea |
| Q41117763 | Characterization of the mechanism of prolonged adaptation to osmotic stress of Jeotgalibacillus malaysiensis via genome and transcriptome sequencing analyses |
| Q36993863 | Cloning, Purification, and Partial Characterization of the Halobacterium sp. NRC-1 Minichromosome Maintenance (MCM) Helicase |
| Q34548717 | Cloning, overexpression, purification, and characterization of a polyextremophilic β-galactosidase from the Antarctic haloarchaeon Halorubrum lacusprofundi |
| Q38555827 | Comparative Genomics of Bacillus species and its Relevance in Industrial Microbiology |
| Q28828755 | Comparative Genomics of the Extreme Acidophile Acidithiobacillus thiooxidans Reveals Intraspecific Divergence and Niche Adaptation |
| Q34786495 | Comparative genomic analysis of six bacteria belonging to the genus Novosphingobium: insights into marine adaptation, cell-cell signaling and bioremediation. |
| Q28742095 | Comparative genomics study of polyhydroxyalkanoates (PHA) and ectoine relevant genes from Halomonas sp. TD01 revealed extensive horizontal gene transfer events and co-evolutionary relationships |
| Q24816721 | Comparison of theoretical proteomes: identification of COGs with conserved and variable pI within the multimodal pI distribution |
| Q24797455 | Comprehensive de novo structure prediction in a systems-biology context for the archaea Halobacterium sp. NRC-1 |
| Q42411800 | Crystallization and preliminary X-ray analysis of binary and ternary complexes of Haloferax mediterranei glucose dehydrogenase. |
| Q42369787 | DNA Repair and Photoprotection: Mechanisms of Overcoming Environmental Ultraviolet Radiation Exposure in Halophilic Archaea |
| Q33955926 | Differences in lateral gene transfer in hypersaline versus thermal environments |
| Q36070868 | Diversity and subcellular distribution of archaeal secreted proteins |
| Q50149681 | Dynamic structure mediates halophilic adaptation of a DNA polymerase from the deep-sea brines of the Red Sea. |
| Q62772968 | Early evolution of purple retinal pigments on Earth and implications for exoplanet biosignatures |
| Q43017996 | Effects of intracellular Mn on the radiation resistance of the halophilic archaeon Halobacterium salinarum |
| Q41677269 | Effects of salinity on the cellular physiological responses of Natrinema sp. J7-2 |
| Q47214435 | Electrostatic Interactions in Protein Structure, Folding, Binding, and Condensation |
| Q91917265 | Environmental factors influence the Haloferax volcanii S-layer protein structure |
| Q34374202 | Environmental signatures in proteome properties |
| Q33287225 | Essential and non-essential DNA replication genes in the model halophilic Archaeon, Halobacterium sp. NRC-1 |
| Q37705465 | Evidence from phylogenetic and genome fingerprinting analyses suggests rapidly changing variation in Halorubrum and Haloarcula populations |
| Q55316854 | Exoplanet Biosignatures: Future Directions. |
| Q61707534 | Extreme Marine Environments (Brines, Seeps, and Smokers) |
| Q28744181 | Extremely halophilic archaea and the issue of long-term microbial survival |
| Q43020161 | Ferredoxin-dependent glutamate synthase: involvement in ammonium assimilation in Haloferax mediterranei. |
| Q34266261 | Function and biotechnology of extremophilic enzymes in low water activity |
| Q43032077 | GC content-independent amino acid patterns in bacteria and archaea |
| Q26782563 | Gas Vesicle Nanoparticles for Antigen Display |
| Q28469214 | Genetic and physical mapping of DNA replication origins in Haloferax volcanii |
| Q89453631 | Genome Sequence of Salarchaeum sp. Strain JOR-1, an Extremely Halophilic Archaeon from the Dead Sea |
| Q92646213 | Genome Sequences and Methylation Patterns of Natrinema versiforme BOL5-4 and Natrinema pallidum BOL6-1, Two Extremely Halophilic Archaea from a Bolivian Salt Mine |
| Q35587253 | Genome of alkaliphilic Bacillus pseudofirmus OF4 reveals adaptations that support the ability to grow in an external pH range from 7.5 to 11.4. |
| Q22065753 | Genome sequence of Haloarcula marismortui: a halophilic archaeon from the Dead Sea |
| Q48074424 | Genome sequences of Halobacterium species |
| Q35865311 | Genomewide and biochemical analyses of DNA-binding activity of Cdc6/Orc1 and Mcm proteins in Pyrococcus sp. |
| Q36287989 | Genomic perspective on the photobiology of Halobacterium species NRC-1, a phototrophic, phototactic, and UV-tolerant haloarchaeon. |
| Q80325497 | Genomic survey of sequence features for ultraviolet tolerance in Haloarchaea (family Halobacteriaceae) |
| Q24653367 | Genomics of bacteria and archaea: the emerging dynamic view of the prokaryotic world |
| Q37538139 | Getting a better picture of microbial evolution en route to a network of genomes |
| Q42129857 | Global analysis of mRNA decay in Halobacterium salinarum NRC-1 at single-gene resolution using DNA microarrays. |
| Q34375646 | Global analysis of predicted proteomes: functional adaptation of physical properties |
| Q36143579 | Growth-Phase-Specific Modulation of Cell Morphology and Gene Expression by an Archaeal Histone Protein |
| Q36509587 | Haloarchaeal gas vesicle nanoparticles displaying Salmonella SopB antigen reduce bacterial burden when administered with live attenuated bacteria |
| Q34515009 | Haloarchaeal gas vesicle nanoparticles displaying Salmonella antigens as a novel approach to vaccine development |
| Q37267087 | Halobacterial nano vesicles displaying murine bactericidal permeability-increasing protein rescue mice from lethal endotoxic shock |
| Q37098764 | Halobacterium salinarum NRC-1 PeptideAtlas: toward strategies for targeted proteomics and improved proteome coverage |
| Q34480329 | Halophiles and their enzymes: negativity put to good use. |
| Q43025327 | High production of bacteriorhodopsin from wild type Halobacterium salinarum. |
| Q101133127 | Hikarchaeia demonstrate an intermediate stage in the methanogen-to-halophile transition |
| Q81898718 | Horizontal transfer of two operons coding for hydrogenases between bacteria and archaea |
| Q35069306 | How big is the iceberg of which organellar genes in nuclear genomes are but the tip? |
| Q55416513 | Hundreds of novel composite genes and chimeric genes with bacterial origins contributed to haloarchaeal evolution. |
| Q36339122 | Identification and Characterization of a Novel Salt-Tolerant Esterase from the Deep-Sea Sediment of the South China Sea. |
| Q21343029 | Identification of replication origins in archaeal genomes based on the Z-curve method |
| Q36160348 | Immunogenicity and protective potential of a Plasmodium spp. enolase peptide displayed on archaeal gas vesicle nanoparticles |
| Q58716718 | Internal RNAs overlapping coding sequences can drive the production of alternative proteins in archaea |
| Q43033492 | Key amino acid residues conferring enhanced enzyme activity at cold temperatures in an Antarctic polyextremophilic β-galactosidase |
| Q33297007 | Large scale comparative codon-pair context analysis unveils general rules that fine-tune evolution of mRNA primary structure. |
| Q22065317 | Low-pass sequencing for microbial comparative genomics |
| Q33681520 | Mechanisms of thermal adaptation revealed from the genomes of the Antarctic Archaea Methanogenium frigidum and Methanococcoides burtonii |
| Q28740630 | Metabolic capabilities and systems fluctuations in Haloarcula marismortui revealed by integrative genomics and proteomics analyses |
| Q41960176 | Microbial life at high salt concentrations: phylogenetic and metabolic diversity |
| Q35841326 | Microbial lifestyle and genome signatures |
| Q36790277 | Millimeter-scale genetic gradients and community-level molecular convergence in a hypersaline microbial mat |
| Q37832278 | Model organisms for genetics in the domain Archaea: methanogens, halophiles, Thermococcales and Sulfolobales |
| Q90028297 | Molecular Adaptations of Bacterial Mercuric Reductase to the Hypersaline Kebrit Deep in the Red Sea |
| Q35638988 | Molecular aspects of bacterial pH sensing and homeostasis |
| Q35220626 | Molecular characterization of the minimal replicon and the unidirectional theta replication of pSCM201 in extremely halophilic archaea |
| Q21128662 | Molecular signature of hypersaline adaptation: insights from genome and proteome composition of halophilic prokaryotes |
| Q37302010 | Multiple replication origins of Halobacterium sp. strain NRC-1: properties of the conserved orc7-dependent oriC1. |
| Q43032665 | Multiple replication origins of the archaeon Halobacterium species NRC-1. |
| Q36197559 | N-glycosylation of Haloferax volcanii flagellins requires known Agl proteins and is essential for biosynthesis of stable flagella |
| Q39863165 | Neutron scattering: a tool to detect in vivo thermal stress effects at the molecular dynamics level in micro-organisms. |
| Q37788574 | Novel soluble expression technologies derived from unique properties of halophilic proteins |
| Q26795686 | Origin of eukaryotes from within archaea, archaeal eukaryome and bursts of gene gain: eukaryogenesis just made easier? |
| Q38789915 | Oxidative Stickland reactions in an obligate aerobic organism - amino acid catabolism in the Crenarchaeon Sulfolobus solfataricus. |
| Q33248727 | PROMPT: a protein mapping and comparison tool |
| Q21263202 | Phylogenomic analysis of proteins that are distinctive of Archaea and its main subgroups and the origin of methanogenesis |
| Q41928151 | Phylogeny of Rieske/cytb complexes with a special focus on the Haloarchaeal enzymes. |
| Q57103308 | Post-genomics of the model haloarchaeon Halobacterium sp. NRC-1 |
| Q43025780 | Production of halophilic proteins using Haloferax volcanii H1895 in a stirred-tank bioreactor. |
| Q42130278 | Protein attributes contribute to halo-stability, bioinformatics approach. |
| Q43018181 | Protein hypersaline adaptation: insight from amino acids with machine learning algorithms |
| Q36498040 | Protein secretion in the Archaea: multiple paths towards a unique cell surface |
| Q89532482 | Protein stability governed by its structural plasticity is inferred by physicochemical factors and salt bridges |
| Q43019635 | Proteome analysis of Halobacterium sp. NRC-1 facilitated by the biomodule analysis tool BMSorter |
| Q33804297 | Proteome sequence features carry signatures of the environmental niche of prokaryotes. |
| Q34665825 | Proteomic analysis of acidic chaperones, and stress proteins in extreme halophile Halobacterium NRC-1: a comparative proteomic approach to study heat shock response |
| Q40573693 | Proteomic analysis of an extreme halophilic archaeon, Halobacterium sp. NRC-1. |
| Q37169320 | Proteomics of marine bacteria |
| Q37514141 | Pseudomonas putida CSV86: a candidate genome for genetic bioaugmentation |
| Q28179910 | Purification and biological characterization of halocin C8, a novel peptide antibiotic from Halobacterium strain AS7092 |
| Q33521368 | Quantitative analysis of replication-related mutation and selection pressures in bacterial chromosomes and plasmids using generalised GC skew index |
| Q40494874 | Recurrent horizontal transfer of arsenite methyltransferase genes facilitated adaptation of life to arsenic. |
| Q30352233 | Romance of the three domains: how cladistics transformed the classification of cellular organisms |
| Q31158967 | Salt-bridge energetics in halophilic proteins |
| Q37651490 | Sea ice microorganisms: environmental constraints and extracellular responses |
| Q28757678 | Signature genes as a phylogenomic tool |
| Q24792439 | Simple sequence repeats and compositional bias in the bipartite Ralstonia solanacearum GMI1000 genome |
| Q27675962 | Simplified protein design biased for prebiotic amino acids yields a foldable, halophilic protein |
| Q91920431 | Specificity of protein-DNA interactions in hypersaline environment: structural studies on complexes of Halobacterium salinarum oxidative stress-dependent protein hsRosR |
| Q43031550 | Structural and Mechanistic Insights into the Improvement of the Halotolerance of a Marine Microbial Esterase by Increasing Intra- and Interdomain Hydrophobic Interactions |
| Q35949283 | Structure and function of cold shock proteins in archaea. |
| Q34342155 | Systems level insights into the stress response to UV radiation in the halophilic archaeon Halobacterium NRC-1 |
| Q36506383 | Ten years of bacterial genome sequencing: comparative-genomics-based discoveries. |
| Q30369341 | The Halophile protein database. |
| Q42094076 | The Presence of the DNA Repair Genes mutM, mutY, mutL, and mutS is Related to Proteome Size in Bacterial Genomes. |
| Q33641932 | The biotechnological potential of the extreme halophilic archaea Haloterrigena sp. H13 in xenobiotic metabolism using a comparative genomics approach. |
| Q21563627 | The cobweb of life revealed by genome-scale estimates of horizontal gene transfer |
| Q34137962 | The core and unique proteins of haloarchaea |
| Q42917474 | The effects of extremes of pH on the growth and transcriptomic profiles of three haloarchaea |
| Q43025059 | The extremely halophilic archaeon Halobacterium salinarum R1 responds to potassium limitation by expression of the K+-transporting KdpFABC P-type ATPase and by a decrease in intracellular K+. |
| Q37340611 | The fate of new bacterial genes. |
| Q30570963 | The futalosine pathway played an important role in menaquinone biosynthesis during early prokaryote evolution |
| Q22066350 | The genome of Salinibacter ruber: convergence and gene exchange among hyperhalophilic bacteria and archaea |
| Q24626139 | The methylaspartate cycle in haloarchaea and its possible role in carbon metabolism |
| Q24669622 | The origin and evolution of Archaea: a state of the art |
| Q27496615 | The relationships between the isoelectric point and: length of proteins, taxonomy and ecology of organisms |
| Q33272853 | The role of laterally transferred genes in adaptive evolution |
| Q35207896 | The sulfate-rich and extreme saline sediment of the ephemeral tirez lagoon: a biotope for acetoclastic sulfate-reducing bacteria and hydrogenotrophic methanogenic archaea |
| Q33708659 | The tree and net components of prokaryote evolution |
| Q42384586 | Transcriptional profiling of the model Archaeon Halobacterium sp. NRC-1: responses to changes in salinity and temperature |
| Q59335120 | Transcriptomes Divergence of Between the Two Micro-Climatic Divergent Slopes at "Evolution Canyon" I, Israel |
| Q43032608 | Unique amino acid composition of proteins in halophilic bacteria |
| Q40942773 | Weighted genome trees: refinements and applications |
| Q30336098 | What We Have Learned about Prokaryotes from Structural Genomics |
Search more.