Homologous gene knockout in the archaeon Halobacterium salinarum with ura3 as a counterselectable marker

scientific article (publication date: February 2000)

Homologous gene knockout in the archaeon Halobacterium salinarum with ura3 as a counterselectable marker is …
instance of (P31):
scholarly articleQ13442814

External links are
P356DOI10.1046/J.1365-2958.2000.01739.X
P3181OpenCitations bibliographic resource ID3118542
P698PubMed publication ID10672188
P5875ResearchGate publication ID12643552

P2093author name stringS DasSarma
R F Peck
M P Krebs
P2860cites workComplete Genome Sequence of the Methanogenic Archaeon, Methanococcus jannaschiiQ22065564
Complete Genome Sequence of an Aerobic Hyper-thermophilic Crenarchaeon, Aeropyrum pernix K1Q22066070
Complete Sequence and Gene Organization of the Genome of a Hyper-thermophilic Archaebacterium, Pyrococcus horikoshii OT3Q22066073
The complete genome sequence of the hyperthermophilic, sulphate-reducing archaeon Archaeoglobus fulgidusQ22122358
Phylogenetic structure of the prokaryotic domain: The primary kingdomsQ24564821
Complete genome sequence of Methanobacterium thermoautotrophicum deltaH: functional analysis and comparative genomicsQ24676592
Methods for generating precise deletions and insertions in the genome of wild-type Escherichia coli: application to open reading frame characterizationQ24676777
A positive selection for mutants lacking orotidine-5'-phosphate decarboxylase activity in yeast: 5-fluoro-orotic acid resistanceQ28131606
Transcription initiation in Archaea: facts, factors and future aspectsQ33592579
Closing in on bacteriorhodopsin: progress in understanding the moleculeQ33689951
Transformation of Halobacterium halobium: development of vectors and investigation of gas vesicle synthesisQ33772203
Archaeal Histones, Nucleosomes, and Transcription InitiationQ34064849
A transposable element from Halobacterium halobium which inactivates the bacteriorhodopsin geneQ34254087
Shuttle vectors for the archaebacterium Halobacterium volcaniiQ34291257
Ancient Ciphers: Translation in ArchaeaQ34431844
A genetic system for Archaea of the genus Methanosarcina: liposome-mediated transformation and construction of shuttle vectorsQ36052593
Gene replacement in Halobacterium halobium and expression of bacteriorhodopsin mutantsQ36145047
A morphological study of Halobacterium halobium and its lysis in media of low salt concentrationQ36188888
Introducing mutations into the single-copy chromosomal 23S rRNA gene of the archaeon Halobacterium halobium by using an rRNA operon-based transformation systemQ37111746
Expression of the bacterioopsin gene in Halobacterium halobium using a multicopy plasmidQ37387941
Signal transduction in the archaeon Halobacterium salinarium is processed through three subfamilies of 13 soluble and membrane-bound transducer proteinsQ37600593
Efficient transfection of the archaebacterium Halobacterium halobiumQ39956187
Positive selection for uracil auxotrophs of the sulfur-dependent thermophilic archaebacterium Sulfolobus acidocaldarius by use of 5-fluoroorotic acidQ39958166
Further characterization of particulate fractions from lysed cell envelopes of Halobacterium halobium and isolation of gas vacuole membranesQ41103118
Archaea and the Origin(s) of DNA Replication ProteinsQ41524701
Molecular mechanism of photosignaling by archaeal sensory rhodopsinsQ41548959
Mechanism of ion transport across membranes. Bacteriorhodopsin as a prototype for proton pumpsQ41659111
Car: a cytoplasmic sensor responsible for arginine chemotaxis in the archaeon Halobacterium salinarumQ41901736
An efficient system for the synthesis of bacteriorhodopsin in Halobacterium halobiumQ43017914
High-frequency genomic rearrangements involving archaebacterial repeat sequence elementsQ43021585
Gas vesicle formation in halophilic ArchaeaQ43024546
Transcription and translation in Archaea: a mosaic of eukaryal and bacterial featuresQ47797051
Novel organization and sequences of five genes encoding all six enzymes for de novo pyrimidine biosynthesis in Trypanosoma cruziQ47996996
Unmarked gene integration into the chromosome of Mycobacterium smegmatis via precise replacement of the pyrF geneQ48055729
Intramembrane substitutions in helix D of bacteriorhodopsin disrupt the purple membrane.Q50529884
P433issue3
P407language of work or nameEnglishQ1860
P921main subjectHalobacterium salinarumQ3782756
P304page(s)667-76
P577publication date2000-02-01
P1433published inMolecular MicrobiologyQ6895967
P1476titleHomologous gene knockout in the archaeon Halobacterium salinarum with ura3 as a counterselectable marker
P478volume35

Reverse relations

cites work (P2860)
Q24628299A new pathway for salvaging the coenzyme B12 precursor cobinamide in archaea requires cobinamide-phosphate synthase (CbiB) enzyme activity
Q47549794A novel family of tyrosine integrases encoded by the temperate pleolipovirus SNJ2.
Q35540015A regulatory hierarchy controls the dynamic transcriptional response to extreme oxidative stress in archaea
Q28244664A transcription factor links growth rate and metabolism in the hypersaline adapted archaeon Halobacterium salinarum
Q46296036A transcription network of interlocking positive feedback loops maintains intracellular iron balance in archaea
Q42207412A workflow for genome-wide mapping of archaeal transcription factors with ChIP-seq.
Q38321961ABC transporter for corrinoids in Halobacterium sp. strain NRC-1.
Q40986642Adaptation of the yeast URA3 selection system to gram-negative bacteria and generation of a {delta}betCDE Pseudomonas putida strain
Q43207102Aminoacylation of an unusual tRNA(Cys) from an extreme halophile
Q34267329An Archaeal Chromosomal Autonomously Replicating Sequence Element from an Extreme Halophile,Halobacteriumsp. Strain NRC-1
Q34393453An improved genetic system for bioengineering buoyant gas vesicle nanoparticles from Haloarchaea.
Q37080464Archaeal RNA polymerase subunits E and F are not required for transcription in vitro, but a Thermococcus kodakarensis mutant lacking subunit F is temperature-sensitive
Q34381254Archaeal genetics - the third way.
Q40816248Arsenic resistance in Halobacterium sp. strain NRC-1 examined by using an improved gene knockout system.
Q35272720Bacterioopsin-mediated regulation of bacterioruberin biosynthesis in Halobacterium salinarum.
Q41950908Bacteriorhodopsin chimeras containing the third cytoplasmic loop of bovine rhodopsin activate transducin for GTP/GDP exchange
Q34408562Carbohydrate metabolism in Archaea: current insights into unusual enzymes and pathways and their regulation.
Q43878147Characterization of the minimal replicon of pHM300 and independent copy number control of major and minor chromosomes of Haloferax mediterranei
Q33601758Chromosomal insertions in the Lactobacillus casei upp gene that are useful for vaccine expression
Q39801609Complete biosynthetic pathway of the C50 carotenoid bacterioruberin from lycopene in the extremely halophilic archaeon Haloarcula japonica
Q58707502Complex Effects of Cytochrome P450 Monooxygenase on Purple Membrane and Bacterioruberin Production in an Extremely Halophilic Archaeon: Genetic, Phenotypic, and Transcriptomic Analyses
Q37735317Complexity of gas vesicle biogenesis in Halobacterium sp. strain NRC-1: identification of five new proteins
Q37700092Construction of Expression Shuttle Vectors for the Haloarchaeon Natrinema sp. J7 Based on Its Chromosomal Origins of Replication.
Q34165738Construction of a shuttle vector for, and spheroplast transformation of, the hyperthermophilic archaeon Pyrococcus abyssi
Q58703328Copy number variation is associated with gene expression change in archaea
Q35288851Crystal structure of Cruxrhodopsin-3 from Haloarcula vallismortis
Q27684504Crystal structure of deltarhodopsin-3 from Haloterrigena thermotolerans
Q41889028Deciphering a pathway of Halobacterium salinarum N-glycosylation.
Q46217252Deletion of pyruvate decarboxylase by a new method for efficient markerless gene deletions in Gluconobacter oxydans
Q37619116Detecting differential growth of microbial populations with Gaussian process regression.
Q37314718Developing a genetic manipulation system for the Antarctic archaeon, Halorubrum lacusprofundi: investigating acetamidase gene function
Q43128209Development and application of a upp-based counterselective gene replacement system for the study of the S-layer protein SlpX of Lactobacillus acidophilus NCFM.
Q35659785Development of New Modular Genetic Tools for Engineering the Halophilic Archaeon Halobacterium salinarum
Q34513433Development of a gene knockout system for the halophilic archaeon Haloferax volcanii by use of the pyrE gene
Q43030604Development of a genetic system for the moderately halophilic bacterium Halobacillus halophilus: generation and characterization of mutants defect in the production of the compatible solute proline
Q35751764Development of a host-genotype-independent counterselectable marker and a high-frequency conjugative delivery system and their use in genetic analysis of Enterococcus faecalis
Q36933634Development of a markerless genetic exchange method for Methanosarcina acetivorans C2A and its use in construction of new genetic tools for methanogenic archaea
Q37477307Development of a markerless genetic exchange system for Desulfovibrio vulgaris Hildenborough and its use in generating a strain with increased transformation efficiency
Q34097982Development of a method for markerless genetic exchange in Enterococcus faecalis and its use in construction of a srtA mutant
Q43029225Development of a pyrE-based selective system for Thermotoga sp. strain RQ7.
Q48038828Directed chromosomal integration and expression of porcine rotavirus outer capsid protein VP4 in Lactobacillus casei ATCC393.
Q36904254Directed evolution of bacteriorhodopsin for applications in bioelectronics
Q42845404Disruption of a sugar transporter gene cluster in a hyperthermophilic archaeon using a host-marker system based on antibiotic resistance
Q53693295Divergent Roles of RPA Homologs of the Model Archaeon Halobacterium salinarum in Survival of DNA Damage.
Q35748784Dynamic Metabolite Profiling in an Archaeon Connects Transcriptional Regulation to Metabolic Consequences
Q42116929Electron paramagnetic resonance study of structural changes in the O photointermediate of bacteriorhodopsin
Q33287225Essential and non-essential DNA replication genes in the model halophilic Archaeon, Halobacterium sp. NRC-1
Q33877062Francisella tularensis DeltapyrF mutants show that replication in nonmacrophages is sufficient for pathogenesis in vivo
Q33300157Genetic and transcriptomic analysis of transcription factor genes in the model halophilic Archaeon: coordinate action of TbpD and TfbA
Q43023266Genetic tools for the piezophilic hyperthermophilic archaeon Pyrococcus yayanosii
Q22066243Genome sequence of Halobacterium species NRC-1
Q48074424Genome sequences of Halobacterium species
Q33714526Genomic analysis of anaerobic respiration in the archaeon Halobacterium sp. strain NRC-1: dimethyl sulfoxide and trimethylamine N-oxide as terminal electron acceptors
Q34471104Genomic and genetic dissection of an archaeal regulon
Q36287989Genomic perspective on the photobiology of Halobacterium species NRC-1, a phototrophic, phototactic, and UV-tolerant haloarchaeon.
Q36143579Growth-Phase-Specific Modulation of Cell Morphology and Gene Expression by an Archaeal Histone Protein
Q34515009Haloarchaeal gas vesicle nanoparticles displaying Salmonella antigens as a novel approach to vaccine development
Q34311457Identification of a lycopene beta-cyclase required for bacteriorhodopsin biogenesis in the archaeon Halobacterium salinarum.
Q41913560Improved and versatile transformation system allowing multiple genetic manipulations of the hyperthermophilic archaeon Thermococcus kodakaraensis
Q44950536Improvement of culture conditions and evidence for nuclear transformation by homologous recombination in a red alga, Cyanidioschyzon merolae 10D.
Q35680680Isolation and Molecular Identification of Auxotrophic Mutants to Develop a Genetic Manipulation System for the Haloarchaeon Natrinema sp. J7-2.
Q33578350Large scale physiological readjustment during growth enables rapid, comprehensive and inexpensive systems analysis
Q33758133Markerless mutagenesis in Methanococcus maripaludis demonstrates roles for alanine dehydrogenase, alanine racemase, and alanine permease
Q34561871Metallochaperones regulate intracellular copper levels
Q34396063Methylation by a unique α-class N4-cytosine methyltransferase is required for DNA transformation of Caldicellulosiruptor bescii DSM6725.
Q37832278Model organisms for genetics in the domain Archaea: methanogens, halophiles, Thermococcales and Sulfolobales
Q37643253Model organisms retain an "ecological memory" of complex ecologically relevant environmental variation.
Q37302010Multiple replication origins of Halobacterium sp. strain NRC-1: properties of the conserved orc7-dependent oriC1.
Q33530108MutS and MutL are dispensable for maintenance of the genomic mutation rate in the halophilic archaeon Halobacterium salinarum NRC-1.
Q91638668N-Glycosylation Is Important for Halobacterium salinarum Archaellin Expression, Archaellum Assembly and Cell Motility
Q28741536Natural competence in the hyperthermophilic archaeon Pyrococcus furiosus facilitates genetic manipulation: construction of markerless deletions of genes encoding the two cytoplasmic hydrogenases
Q35616482Nonsense suppression in archaea
Q37519416OMICS in ecology: systems level analyses of Halobacterium salinarum reveal large-scale temperature-mediated changes and a requirement of CctA for thermotolerance
Q34783731Optimization of bacteriorhodopsin for bioelectronic devices.
Q35169718Ordered membrane insertion of an archaeal opsin in vivo.
Q36291927Overview of the genetic tools in the Archaea
Q34412924Physiological responses of the halophilic archaeon Halobacterium sp. strain NRC1 to desiccation and gamma irradiation
Q57103308Post-genomics of the model haloarchaeon Halobacterium sp. NRC-1
Q43019635Proteome analysis of Halobacterium sp. NRC-1 facilitated by the biomodule analysis tool BMSorter
Q36804397Rad50 is not essential for the Mre11-dependent repair of DNA double-strand breaks in Halobacterium sp. strain NRC-1.
Q36017870Recombinogenic properties of Pyrococcus furiosus strain COM1 enable rapid selection of targeted mutants.
Q33267353Regulated polyploidy in halophilic archaea
Q24548944Secreted euryarchaeal microhalocins kill hyperthermophilic crenarchaea
Q34030930Structural determinants of purple membrane assembly.
Q41689740Systematic Discovery of Archaeal Transcription Factor Functions in Regulatory Networks through Quantitative Phenotyping Analysis
Q45037672Systems approaches applied to the study of Saccharomyces cerevisiae and Halobacterium sp.
Q40937422Systems biology approaches to defining transcription regulatory networks in halophilic archaea
Q34342155Systems level insights into the stress response to UV radiation in the halophilic archaeon Halobacterium NRC-1
Q39702688Targeted gene disruption by homologous recombination in the hyperthermophilic archaeon Thermococcus kodakaraensis KOD1.
Q34356871The RosR transcription factor is required for gene expression dynamics in response to extreme oxidative stress in a hypersaline-adapted archaeon
Q34490507The cobY gene of the archaeon Halobacterium sp. strain NRC-1 is required for de novo cobamide synthesis.
Q34514376The cobZ gene of Methanosarcina mazei Go1 encodes the nonorthologous replacement of the alpha-ribazole-5'-phosphate phosphatase (CobC) enzyme of Salmonella enterica
Q38364463The uvrA, uvrB and uvrC genes are required for repair of ultraviolet light induced DNA photoproducts in Halobacterium sp. NRC-1.
Q33327594Transcriptional profile of the homologous recombination machinery and characterization of the EhRAD51 recombinase in response to DNA damage in Entamoeba histolytica
Q44908633Translation initiation with GUC codon in the archaeon Halobacterium salinarum: implications for translation of leaderless mRNA and strict correlation between translation initiation and presence of mRNA.
Q34779428Two transcription factors are necessary for iron homeostasis in a salt-dwelling archaeon
Q34094195Understanding the adaptation of Halobacterium species NRC-1 to its extreme environment through computational analysis of its genome sequence
Q43026895Unmarked gene deletion and host-vector system for the hyperthermophilic crenarchaeon Sulfolobus islandicus
Q43510596brp and blh are required for synthesis of the retinal cofactor of bacteriorhodopsin in Halobacterium salinarum

Search more.