Post-genomics of the model haloarchaeon Halobacterium sp. NRC-1

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Post-genomics of the model haloarchaeon Halobacterium sp. NRC-1 is …
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review articleQ7318358
scholarly articleQ13442814

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P6179Dimensions Publication ID1021744826
P356DOI10.1186/1746-1448-2-3
P932PMC publication ID1447603
P698PubMed publication ID16542428

P50authorJames A. CokerQ37830802
Jochen A MüllerQ57947501
P2093author name stringBrian R Berquist
Priya DasSarma
Shiladitya DasSarma
P2860cites workUV irradiation induces homologous recombination genes in the model archaeon, Halobacterium sp. NRC-1Q21203696
Genome trees constructed using five different approaches suggest new major bacterial cladesQ21284133
Low-pass sequencing for microbial comparative genomicsQ22065317
Living with two extremes: conclusions from the genome sequence of Natronomonas pharaonisQ22065744
Genome sequence of Haloarcula marismortui: a halophilic archaeon from the Dead SeaQ22065753
Genome sequence of Halobacterium species NRC-1Q22066243
Identification of short 'eukaryotic' Okazaki fragments synthesized from a prokaryotic replication originQ24534576
Phylogenetic structure of the prokaryotic domain: The primary kingdomsQ24564821
Conserved sequence motifs in the initiator proteins for rolling circle DNA replication encoded by diverse replicons from eubacteria, eucaryotes and archaebacteriaQ24604023
A new pathway for salvaging the coenzyme B12 precursor cobinamide in archaea requires cobinamide-phosphate synthase (CbiB) enzyme activityQ24628299
CbiZ, an amidohydrolase enzyme required for salvaging the coenzyme B12 precursor cobinamide in archaeaQ24633452
Archaeal phylogeny based on proteins of the transcription and translation machineries: tackling the Methanopyrus kandleri paradoxQ24791153
Evolution of mosaic operons by horizontal gene transfer and gene displacement in situQ24797089
Comprehensive de novo structure prediction in a systems-biology context for the archaea Halobacterium sp. NRC-1Q24797455
A positive selection for mutants lacking orotidine-5'-phosphate decarboxylase activity in yeast: 5-fluoro-orotic acid resistanceQ28131606
Halophilic adaptation of enzymesQ28144061
Homologous gene knockout in the archaeon Halobacterium salinarum with ura3 as a counterselectable markerQ28144638
Rhodopsin-like protein from the purple membrane of Halobacterium halobiumQ28248225
Complete genome sequence of the model actinomycete Streptomyces coelicolor A3(2)Q29547307
Expression profiling using microarrays fabricated by an ink-jet oligonucleotide synthesizerQ29617394
Cassette-based presentation of SIV epitopes with recombinant gas vesicles from halophilic archaeaQ30842030
Intracellular ion and organic solute concentrations of the extremely halophilic bacterium Salinibacter ruberQ30875046
Halobacterium noricense sp. nov., an archaeal isolate from a bore core of an alpine Permian salt deposit, classification of Halobacterium sp. NRC-1 as a strain of H. salinarum and emended description of H. salinarumQ30950253
Poorly conserved ORFs in the genome of the archaea Halobacterium sp. NRC-1 correspond to expressed proteins.Q31044205
Analysis of the cytosolic proteome of Halobacterium salinarum and its implication for genome annotation.Q31137369
Snapshot of a large dynamic replicon in a halophilic archaeon: megaplasmid or minichromosome?Q31958293
Structural diversity of membrane lipids in members of HalobacteriaceaeQ33178724
The membrane proteome of Halobacterium salinarumQ33210360
A microprobe analysis of inorganic elements in Halobacterium salinarumQ33218706
Genomic analysis of anaerobic respiration in the archaeon Halobacterium sp. strain NRC-1: dimethyl sulfoxide and trimethylamine N-oxide as terminal electron acceptorsQ33714526
Gas vesicle genes identified in Bacillus megaterium and functional expression in Escherichia coliQ33730173
Three replication origins in Sulfolobus species: synchronous initiation of chromosome replication and asynchronous terminationQ33782439
Saturation mutagenesis of the TATA box and upstream activator sequence in the haloarchaeal bop gene promoter.Q33991783
Salt-dependent properties of proteins from extremely halophilic bacteriaQ34068337
Understanding the adaptation of Halobacterium species NRC-1 to its extreme environment through computational analysis of its genome sequenceQ34094195
A plasmid-encoded gas vesicle protein gene in a halophilic archaebacteriumQ34179464
Reconstitution of purple membrane vesicles catalyzing light-driven proton uptake and adenosine triphosphate formationQ34205240
An Archaeal Chromosomal Autonomously Replicating Sequence Element from an Extreme Halophile,Halobacteriumsp. Strain NRC-1Q34267329
Identification of a lycopene beta-cyclase required for bacteriorhodopsin biogenesis in the archaeon Halobacterium salinarum.Q34311457
Systems level insights into the stress response to UV radiation in the halophilic archaeon Halobacterium NRC-1Q34342155
Coordinate regulation of energy transduction modules in Halobacterium sp. analyzed by a global systems approachQ34380369
Physiological responses of the halophilic archaeon Halobacterium sp. strain NRC1 to desiccation and gamma irradiationQ34412924
Genomic and genetic dissection of an archaeal regulonQ34471104
The cobY gene of the archaeon Halobacterium sp. strain NRC-1 is required for de novo cobamide synthesis.Q34490507
Structure and organization of the gas vesicle gene cluster on the Halobacterium halobium plasmid pNRC100.Q34798798
Protein transport in the halophilic archaeon Halobacterium sp. NRC-1: a major role for the twin-arginine translocation pathway?Q34994697
Structural (shape-maintaining) role of the cell surface glycoprotein of Halobacterium salinariumQ35015946
The archaeal twin-arginine translocation pathwayQ35139421
Repair of UV damage in Halobacterium salinarumQ35139426
Evolution of the cellular stress proteome: from monophyletic origin to ubiquitous functionQ35196532
Fermentative arginine degradation in Halobacterium salinarium (formerly Halobacterium halobium): genes, gene products, and transcripts of the arcRACB gene clusterQ35611100
The rightward gas vesicle operon in Halobacterium plasmid pNRC100: identification of the gvpA and gvpC gene products by use of antibody probes and genetic analysis of the region downstream of gvpC.Q35966873
Wild-type gas vesicle formation requires at least ten genes in the gvp gene cluster of Halobacterium halobium plasmid pNRC100Q35983916
Minimal replication origin of the 200-kilobase Halobacterium plasmid pNRC100.Q36103526
Structure of the gas vesicle plasmid in Halobacterium halobium: inversion isomers, inverted repeats, and insertion sequencesQ36141469
Transcriptional induction of purple membrane and gas vesicle synthesis in the archaebacterium Halobacterium halobium is blocked by a DNA gyrase inhibitorQ36257868
Genomic perspective on the photobiology of Halobacterium species NRC-1, a phototrophic, phototactic, and UV-tolerant haloarchaeon.Q36287989
Complexity of gas vesicle biogenesis in Halobacterium sp. strain NRC-1: identification of five new proteinsQ37735317
DNA damage detection by an archaeal single-stranded DNA-binding proteinQ38320679
ABC transporter for corrinoids in Halobacterium sp. strain NRC-1.Q38321961
Speculations on the evolution of ion transport mechanismsQ39775297
Recent Developments in the Molecular Biology of Extremely Halophilic BacteriaQ39782354
Genetic and topological analyses of the bop promoter of Halobacterium halobium: stimulation by DNA supercoiling and non-B-DNA structureQ39840175
Halotolerance of Methanobacterium thermoautotrophicum delta H and MarburgQ39932058
Analysis of insertion mutants reveals two new genes in the pNRC100 gas vesicle gene cluster of Halobacterium halobiumQ40537851
Proteomic analysis of an extreme halophilic archaeon, Halobacterium sp. NRC-1.Q40573693
Arsenic resistance in Halobacterium sp. strain NRC-1 examined by using an improved gene knockout system.Q40816248
Promoter-selective properties of the TBP-related factor TRF1.Q40882308
Identification of the first archaeal Type 1 RNase H gene from Halobacterium sp. NRC-1: archaeal RNase HI can cleave an RNA-DNA junctionQ42156736
Mevinolin-resistant mutations identify a promoter and the gene for a eukaryote-like 3-hydroxy-3-methylglutaryl-coenzyme A reductase in the archaebacterium Haloferax volcanii.Q42609740
Genes encoding proteins homologous to halobacterial Gvps N, J, K, F & L are located downstream of gvpC in the cyanobacterium Anabaena flos-aquaeQ42651659
Transformation methods for halophilic archaebacteriaQ43018042
Proteome analysis of Halobacterium sp. NRC-1 facilitated by the biomodule analysis tool BMSorterQ43019635
Electrostatic contributions to the stability of halophilic proteinsQ43025485
Was the environment for primordial life hypersaline?Q43025937
Antigen presentation using novel particulate organelles from halophilic archaeaQ43028911
Multiple replication origins of the archaeon Halobacterium species NRC-1.Q43032665
Aminoacylation of an unusual tRNA(Cys) from an extreme halophileQ43207102
brp and blh are required for synthesis of the retinal cofactor of bacteriorhodopsin in Halobacterium salinarumQ43510596
Selection of oligonucleotide probes for protein coding sequencesQ44425073
Genome structure of Halobacterium halobium: plasmid dynamics in gas vacuole deficient mutantsQ44816701
Origins and evolution of isoprenoid lipid biosynthesis in archaeaQ44831523
Identification of two origins of replication in the single chromosome of the archaeon Sulfolobus solfataricusQ47270717
New insights into the evolutionary history of type 1 rhodopsinsQ47348176
GvpE- and GvpD-mediated transcription regulation of the p-gvp genes encoding gas vesicles in Halobacterium salinarumQ47376776
The characterization of the nv- gvpACNOFGH gene cluster involved in gas vesicle formation in Natronobacterium vacuolatumQ48048175
SHOT: a web server for the construction of genome phylogeniesQ56918354
Detailed physical map and set of overlapping clones covering the genome of the archaebacterium Haloferax volcanii DS2Q58487830
Bacterial Mode of Replication with Eukaryotic-Like Machinery in a Hyperthermophilic ArchaeonQ60134797
Saturation mutagenesis of the haloarchaeal bop gene promoter: identification of DNA supercoiling sensitivity sites and absence of TFB recognition element and UAS enhancer activityQ73874042
Is gene expression in Halobacterium NRC-1 regulated by multiple TBP and TFB transcription factors?Q73874047
P433issue1
P407language of work or nameEnglishQ1860
P921main subjectgenomicsQ222046
P304page(s)3
P577publication date2006-03-16
P1433published inSaline SystemsQ15761876
P1476titlePost-genomics of the model haloarchaeon Halobacterium sp. NRC-1
P478volume2

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cites work (P2860)
Q94545143Acid Experimental Evolution of the Haloarchaeon Halobacterium sp. NRC-1 Selects Mutations Affecting Arginine Transport and Catabolism
Q37825464Adaptation of cells to new environments
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Q51653182Archaeal phylogenomics provides evidence in support of a methanogenic origin of the Archaea and a thaumarchaeal origin for the eukaryotes.
Q58707502Complex Effects of Cytochrome P450 Monooxygenase on Purple Membrane and Bacterioruberin Production in an Extremely Halophilic Archaeon: Genetic, Phenotypic, and Transcriptomic Analyses
Q33287225Essential and non-essential DNA replication genes in the model halophilic Archaeon, Halobacterium sp. NRC-1
Q22162489Evolution in the laboratory: The genome of Halobacterium salinarum strain R1 compared to that of strain NRC-1
Q33300157Genetic and transcriptomic analysis of transcription factor genes in the model halophilic Archaeon: coordinate action of TbpD and TfbA
Q48074424Genome sequences of Halobacterium species
Q36281028Genome-wide responses of the model archaeon Halobacterium sp. strain NRC-1 to oxygen limitation.
Q80325497Genomic survey of sequence features for ultraviolet tolerance in Haloarchaea (family Halobacteriaceae)
Q36509587Haloarchaeal gas vesicle nanoparticles displaying Salmonella SopB antigen reduce bacterial burden when administered with live attenuated bacteria
Q34515009Haloarchaeal gas vesicle nanoparticles displaying Salmonella antigens as a novel approach to vaccine development
Q34480329Halophiles and their enzymes: negativity put to good use.
Q37832278Model organisms for genetics in the domain Archaea: methanogens, halophiles, Thermococcales and Sulfolobales
Q42950554Saline Systems highlights for 2006.
Q43017498Secretory production of single-chain antibody (scFv) in Brevibacillus choshinensis using novel fusion partner
Q24678490Size matters: network inference tackles the genome scale
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Q38364463The uvrA, uvrB and uvrC genes are required for repair of ultraviolet light induced DNA photoproducts in Halobacterium sp. NRC-1.
Q42384586Transcriptional profiling of the model Archaeon Halobacterium sp. NRC-1: responses to changes in salinity and temperature

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