Genetic and topological analyses of the bop promoter of Halobacterium halobium: stimulation by DNA supercoiling and non-B-DNA structure

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Genetic and topological analyses of the bop promoter of Halobacterium halobium: stimulation by DNA supercoiling and non-B-DNA structure is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1128/JB.178.3.840-845.1996
P8608Fatcat IDrelease_muxbjf64rvd2pfx3bnqn3h2uuq
P932PMC publication ID177733
P698PubMed publication ID8550521

P2093author name stringJ M Kim
S DasSarma
C F Yang
E Molinari
P2860cites workEfficient transfection of the archaebacterium Halobacterium halobiumQ39956187
Nucleotide sequence of a high copy number plasmid from Halobacterium strain GRBQ40517349
Elements of an archaeal promoter defined by mutational analysisQ40534896
Novobiocin induces positive supercoiling of small plasmids from halophilic archaebacteria in vivoQ40544407
DNA supercoiling and aerobic regulation of transcription from the Klebsiella pneumoniae nifLA promoterQ40556661
Sequence of nifL from Klebsiella pneumoniae: mode of action and relationship to two families of regulatory proteinsQ42649021
Unusual physical organization of the Halobacterium genomeQ43021544
A bacterial enhancer functions to tether a transcriptional activator near a promoter.Q43741901
Local domains of supercoiling activate a eukaryotic promoter in vivoQ46504832
All three elements of the lac ps promoter mediate its transcriptional response to DNA supercoilingQ46576529
Effects of upstream deletions on light- and oxygen-regulated bacterio-opsin gene expression in Halobacterium halobiumQ46729062
Sites of allosteric shift in the structure of the cyclic AMP receptor protein.Q54795893
Genetic and biochemical resolution of the chromophoric polypeptide of halorhodopsinQ71701845
DNA sequencing with chain-terminating inhibitorsQ22066207
The non-B-DNA structure of d(CA/TG)n does not differ from that of Z-DNAQ24563577
Primer-directed enzymatic amplification of DNA with a thermostable DNA polymeraseQ26778389
The chromatin-associated protein H-NS interacts with curved DNA to influence DNA topology and gene expressionQ28201251
Mutational analysis of an archaebacterial promoter: essential role of a TATA box for transcription efficiency and start-site selection in vitroQ33921470
Shuttle vectors for the archaebacterium Halobacterium volcaniiQ34291257
The unexpected antitermination of gyrA-directed transcripts is enhanced by DNA relaxationQ34319488
Bacterio-opsin mRNA in wild-type and bacterio-opsin-deficient Halobacterium halobium strainsQ34510248
Modulation of transcription by DNA supercoiling: a deletion analysis of the Escherichia coli gyrA and gyrB promotersQ34631806
Control of bacterial DNA supercoilingQ35226989
Generation and detection of Z-DNA.Q35401780
Characterization of a halobacterial gene affecting bacterio-opsin gene expressionQ35451060
The bat gene of Halobacterium halobium encodes a trans-acting oxygen inducibility factorQ35465575
DNA twist as a transcriptional sensor for environmental changesQ35744310
Effects of salt and temperature on plasmid topology in the halophilic archaeon Haloferax volcaniiQ35968100
Minimal replication origin of the 200-kilobase Halobacterium plasmid pNRC100.Q36103526
Expression of the bop gene cluster of Halobacterium halobium is induced by low oxygen tension and by lightQ36150240
A plasmid vector with a selectable marker for halophilic archaebacteriaQ36157975
Gyrase inhibitors can increase gyrA expression and DNA supercoilingQ36184546
Characterization of a second gene involved in bacterio-opsin gene expression in a halophilic archaebacteriumQ36219837
Transcription of genes involved in bacterio-opsin gene expression in mutants of a halophilic archaebacteriumQ36219881
Transcriptional induction of purple membrane and gas vesicle synthesis in the archaebacterium Halobacterium halobium is blocked by a DNA gyrase inhibitorQ36257868
The bacteriorhodopsin geneQ36377664
Protein H1: a role for chromatin structure in the regulation of bacterial gene expression and virulence?Q37834160
Bacteriorhodopsin and the purple membrane of halobacteriaQ39246778
Stringency and relaxation among the halobacteria.Q39937390
In vitro activity of NifL, a signal transduction protein for biological nitrogen fixationQ39937974
P433issue3
P304page(s)840-845
P577publication date1996-02-01
P1433published inJournal of BacteriologyQ478419
P1476titleGenetic and topological analyses of the bop promoter of Halobacterium halobium: stimulation by DNA supercoiling and non-B-DNA structure
P478volume178

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cites work (P2860)
Q34022267A small basic protein from the brz-brb operon is involved in regulation of bop transcription in Halobacterium salinarum
Q42207412A workflow for genome-wide mapping of archaeal transcription factors with ChIP-seq.
Q43023827Analysis of left-handed Z-DNA formation in short d(CG)n sequences in Escherichia coli and Halobacterium halobium plasmids. Stabilization by increasing repeat length and DNA supercoiling but not salinity
Q37545429Analysis of the transcriptional regulator GlpR, promoter elements, and posttranscriptional processing involved in fructose-induced activation of the phosphoenolpyruvate-dependent sugar phosphotransferase system in Haloferax mediterranei
Q34064849Archaeal Histones, Nucleosomes, and Transcription Initiation
Q77063246Basal and regulated transcription in archaea
Q34380369Coordinate regulation of energy transduction modules in Halobacterium sp. analyzed by a global systems approach
Q33632498DNA structure and transcription
Q30747966Genetic identification of three ABC transporters as essential elements for nitrate respiration in Haloferax volcanii.
Q36281028Genome-wide responses of the model archaeon Halobacterium sp. strain NRC-1 to oxygen limitation.
Q33714526Genomic analysis of anaerobic respiration in the archaeon Halobacterium sp. strain NRC-1: dimethyl sulfoxide and trimethylamine N-oxide as terminal electron acceptors
Q34471104Genomic and genetic dissection of an archaeal regulon
Q36287989Genomic perspective on the photobiology of Halobacterium species NRC-1, a phototrophic, phototactic, and UV-tolerant haloarchaeon.
Q64077140Halobacterium salinarum virus ChaoS9, a Novel Halovirus Related to PhiH1 and PhiCh1
Q24650551In vitro characterization of a recombinant Blh protein from an uncultured marine bacterium as a beta-carotene 15,15'-dioxygenase
Q43026167In vivo and in vitro studies of RNA degrading activities in Archaea
Q33306509Intragenomic 16S rDNA divergence in Haloarcula marismortui is an adaptation to different temperatures
Q36807259Isolation and chromosomal distribution of natural Z-DNA-forming sequences in Halobacterium halobium
Q57103308Post-genomics of the model haloarchaeon Halobacterium sp. NRC-1
Q24797254Promoter analysis by saturation mutagenesis
Q33991783Saturation mutagenesis of the TATA box and upstream activator sequence in the haloarchaeal bop gene promoter.
Q43510596brp and blh are required for synthesis of the retinal cofactor of bacteriorhodopsin in Halobacterium salinarum

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