scholarly article | Q13442814 |
P6179 | Dimensions Publication ID | 1050518624 |
P356 | DOI | 10.1186/GB-2004-5-8-R52 |
P932 | PMC publication ID | 507877 |
P698 | PubMed publication ID | 15287974 |
P5875 | ResearchGate publication ID | 8422161 |
P50 | author | Leroy Hood | Q1820381 |
Richard Bonneau | Q7324255 | ||
Nitin S Baliga | Q61147359 | ||
Eric W Deutsch | Q53584947 | ||
P2093 | author name string | Paul Shannon | |
P2860 | cites work | De Novo Prediction of Three-dimensional Structures for Major Protein Families | Q56999399 |
Improved recognition of native-like protein structures using a combination of sequence-dependent and sequence-independent features of proteins | Q56999449 | ||
CAFASP3: The third critical assessment of fully automated structure prediction methods | Q57209029 | ||
Practical limits of function prediction | Q74177429 | ||
Genome sequence of Halobacterium species NRC-1 | Q22066243 | ||
Cytoscape: a software environment for integrated models of biomolecular interaction networks | Q24515682 | ||
Dali/FSSP classification of three-dimensional protein folds | Q24544111 | ||
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs | Q24545170 | ||
The Pfam protein families database | Q24599089 | ||
The COG database: new developments in phylogenetic classification of proteins from complete genomes | Q24605347 | ||
Improving the quality of twilight-zone alignments | Q24672075 | ||
Prophage genomics | Q24673108 | ||
SCOP: a structural classification of proteins database for the investigation of sequences and structures | Q27860689 | ||
A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae | Q27860755 | ||
Protein structure comparison by alignment of distance matrices | Q27860798 | ||
Transcriptional regulatory networks in Saccharomyces cerevisiae | Q27860846 | ||
The Pfam protein families database. | Q27861012 | ||
A comprehensive two-hybrid analysis to explore the yeast protein interactome | Q27861093 | ||
Transproteomic evidence of a loop-deletion mechanism for enhancing protein thermostability | Q28138509 | ||
Predictions without templates: New folds, secondary structure, and contacts in CASP5 | Q28212631 | ||
Rosetta in CASP4: progress in ab initio protein structure prediction | Q28218074 | ||
Pfam 3.1: 1313 multiple alignments and profile HMMs match the majority of proteins | Q28291030 | ||
The protein-protein interaction map of Helicobacter pylori | Q28484787 | ||
A hidden Markov model for predicting transmembrane helices in protein sequences | Q29547468 | ||
Detecting protein function and protein-protein interactions from genome sequences | Q29547473 | ||
Protein interaction maps for complete genomes based on gene fusion events | Q29616048 | ||
From protein structure to function. | Q30322099 | ||
Evolution of function in protein superfamilies, from a structural perspective. | Q30328084 | ||
Ab initio protein structure prediction: progress and prospects. | Q30328183 | ||
Functional inferences from blind ab initio protein structure predictions. | Q30328631 | ||
Pcons: a neural-network-based consensus predictor that improves fold recognition. | Q30328734 | ||
MAMMOTH (matching molecular models obtained from theory): an automated method for model comparison | Q30332071 | ||
CASP5 assessment of fold recognition target predictions | Q30336226 | ||
Rosetta predictions in CASP5: successes, failures, and prospects for complete automation. | Q30336227 | ||
Automated prediction of CASP-5 structures using the Robetta server. | Q30336233 | ||
Protein structures sustain evolutionary drift | Q30427746 | ||
SCOP: a structural classification of proteins database | Q30826053 | ||
Snapshot of a large dynamic replicon in a halophilic archaeon: megaplasmid or minichromosome? | Q31958293 | ||
Method for prediction of protein function from sequence using the sequence-to-structure-to-function paradigm with application to glutaredoxins/thioredoxins and T1 ribonucleases | Q32032853 | ||
An archaeal aerotaxis transducer combines subunit I core structures of eukaryotic cytochrome c oxidase and eubacterial methyl-accepting chemotaxis proteins. | Q33727163 | ||
The cytoplasmic helical linker domain of receptor histidine kinase and methyl-accepting proteins is common to many prokaryotic signalling proteins | Q33868984 | ||
Protein function in the post-genomic era. | Q33906809 | ||
Comparative phage genomics and the evolution of Siphoviridae: insights from dairy phages | Q33929777 | ||
Mapping protein family interactions: intramolecular and intermolecular protein family interaction repertoires in the PDB and yeast | Q33939885 | ||
Evolution of protein structures and functions | Q33960329 | ||
Predictome: a database of putative functional links between proteins | Q34010645 | ||
Genomic evidence that the intracellular proteins of archaeal microbes contain disulfide bonds | Q34075149 | ||
Intrinsic errors in genome annotation | Q34085839 | ||
Understanding the adaptation of Halobacterium species NRC-1 to its extreme environment through computational analysis of its genome sequence | Q34094195 | ||
Systems level insights into the stress response to UV radiation in the halophilic archaeon Halobacterium NRC-1 | Q34342155 | ||
Fold change in evolution of protein structures | Q34364834 | ||
Coordinate regulation of energy transduction modules in Halobacterium sp. analyzed by a global systems approach | Q34380369 | ||
Mutational analysis of a conserved signal-transducing element: the HAMP linker of the Escherichia coli nitrate sensor NarX | Q34491912 | ||
When phage, plasmids, and transposons collide: genomic islands, and conjugative- and mobilizable-transposons as a mosaic continuum | Q35013459 | ||
Repair of UV damage in Halobacterium salinarum | Q35139426 | ||
Probing conservation of HAMP linker structure and signal transduction mechanism through analysis of hybrid sensor kinases | Q35172217 | ||
A novel mode of sensory transduction in archaea: binding protein-mediated chemotaxis towards osmoprotectants and amino acids | Q39644892 | ||
R391: a conjugative integrating mosaic comprised of phage, plasmid, and transposon elements | Q39680259 | ||
Structure of the gas vesicle plasmid in Halobacterium halobium inversion isomers, inverted repeats, and insertion sequences | Q39942068 | ||
Chemosensory responses of Halobacterium halobium | Q39972875 | ||
Proteomic analysis of an extreme halophilic archaeon, Halobacterium sp. NRC-1. | Q40573693 | ||
Pitfalls of protein sequence analysis | Q41080810 | ||
Comparison of sequence profiles. Strategies for structural predictions using sequence information | Q41724734 | ||
Structure classification-based assessment of CASP3 predictions for the fold recognition targets | Q42612067 | ||
Comparative genomics of the late gene cluster from Lactobacillus phages | Q42634331 | ||
HF2: a double-stranded DNA tailed haloarchaeal virus with a mosaic genome | Q42674794 | ||
Relationships between fuselloviruses infecting the extremely thermophilic archaeon Sulfolobus: SSV1 and SSV2. | Q43033575 | ||
Transcription mapping as a tool in phage genomics: the case of the temperate Streptococcus thermophilus phage Sfi21. | Q44010018 | ||
The CATH domain structure database. | Q47614051 | ||
Protein folds and functions | Q47625259 | ||
IS421, a new insertion sequence in Escherichia coli | Q48296695 | ||
A powerful non-homology method for the prediction of operons in prokaryotes | Q48625522 | ||
MODBASE, a database of annotated comparative protein structure models. | Q52593063 | ||
P4510 | describes a project that uses | Cytoscape | Q3699942 |
P433 | issue | 8 | |
P407 | language of work or name | English | Q1860 |
P921 | main subject | Archaea | Q10872 |
systems biology | Q815297 | ||
P304 | page(s) | R52 | |
P577 | publication date | 2004-01-01 | |
P1433 | published in | Genome Biology | Q5533480 |
P1476 | title | Comprehensive de novo structure prediction in a systems-biology context for the archaea Halobacterium sp. NRC-1 | |
P478 | volume | 5 |
Q27322345 | A role for programmed cell death in the microbial loop |
Q37262281 | A single transcription factor regulates evolutionarily diverse but functionally linked metabolic pathways in response to nutrient availability |
Q41626547 | A systems view of haloarchaeal strategies to withstand stress from transition metals |
Q94131303 | Article Watch |
Q61772488 | Bacterial ‘Grounded’ Prophages: Hotspots for Genetic Renovation and Innovation |
Q34078895 | Coordination of frontline defense mechanisms under severe oxidative stress |
Q35865281 | Discovering functional linkages and uncharacterized cellular pathways using phylogenetic profile comparisons: a comprehensive assessment |
Q34153589 | From laptop to benchtop to bedside: structure-based drug design on protein targets. |
Q22065753 | Genome sequence of Haloarcula marismortui: a halophilic archaeon from the Dead Sea |
Q37098764 | Halobacterium salinarum NRC-1 PeptideAtlas: toward strategies for targeted proteomics and improved proteome coverage |
Q33733606 | Innate immune detection of the type III secretion apparatus through the NLRC4 inflammasome |
Q28475772 | PSPP: a protein structure prediction pipeline for computing clusters |
Q57103308 | Post-genomics of the model haloarchaeon Halobacterium sp. NRC-1 |
Q21145884 | Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology |
Q33978848 | Synergistic use of plant-prokaryote comparative genomics for functional annotations |
Q41689740 | Systematic Discovery of Archaeal Transcription Factor Functions in Regulatory Networks through Quantitative Phenotyping Analysis |
Q40937422 | Systems biology approaches to defining transcription regulatory networks in halophilic archaea |
Q36120843 | Systems biology in drug safety and metabolism: integration of microarray, real-time PCR and enzyme approaches |
Q33855609 | The Haloferax volcanii FtsY homolog is critical for haloarchaeal growth but does not require the A domain |
Q30478837 | The Inferelator: an algorithm for learning parsimonious regulatory networks from systems-biology data sets de novo |
Q35493943 | The Proteome Folding Project: proteome-scale prediction of structure and function |
Q36004662 | The anatomy of microbial cell state transitions in response to oxygen |
Q34779428 | Two transcription factors are necessary for iron homeostasis in a salt-dwelling archaeon |
Search more.