scholarly article | Q13442814 |
P6179 | Dimensions Publication ID | 1019849461 |
P356 | DOI | 10.1186/1471-2164-12-S1-S2 |
P932 | PMC publication ID | 3223725 |
P698 | PubMed publication ID | 21810204 |
P5875 | ResearchGate publication ID | 51541269 |
P50 | author | Ross Overbeek | Q7369556 |
Crysten E Blaby-Haas | Q55029359 | ||
Valérie de Crécy-Lagard | Q84288090 | ||
P2093 | author name string | Ian K Blaby | |
Aurora Lara-Núñez | |||
Basma El Yacoubi | |||
Andrew D Hanson | |||
Svetlana Gerdes | |||
Andreas Wilke | |||
Marc Bailly | |||
Jeffrey C Waller | |||
Anne Pribat | |||
Linda Jeanguenin | |||
P2860 | cites work | Annotation of the Drosophila melanogaster euchromatic genome: a systematic review | Q21092890 |
Annotation error in public databases: misannotation of molecular function in enzyme superfamilies | Q21145347 | ||
Global functional atlas of Escherichia coli encompassing previously uncharacterized proteins | Q21145830 | ||
EGASP: the human ENCODE Genome Annotation Assessment Project | Q21184139 | ||
The RAST Server: rapid annotations using subsystems technology | Q21263157 | ||
The ribosome assembly factor Nep1 responsible for Bowen-Conradi syndrome is a pseudouridine-N1-specific methyltransferase | Q24293676 | ||
KEGG: kyoto encyclopedia of genes and genomes | Q24515297 | ||
EcoGene: a genome sequence database for Escherichia coli K-12. | Q24515312 | ||
Selfish operons: horizontal transfer may drive the evolution of gene clusters | Q24533213 | ||
Evolutionary analysis of Arabidopsis, cyanobacterial, and chloroplast genomes reveals plastid phylogeny and thousands of cyanobacterial genes in the nucleus | Q24535805 | ||
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs | Q24545170 | ||
BRENDA, enzyme data and metabolic information | Q24548428 | ||
The eukaryotic P loop NTPase Nbp35: an essential component of the cytosolic and nuclear iron-sulfur protein assembly machinery | Q24556514 | ||
Genomic gene clustering analysis of pathways in eukaryotes | Q24561729 | ||
In-depth analysis of the thylakoid membrane proteome of Arabidopsis thaliana chloroplasts: new proteins, new functions, and a plastid proteome database | Q24617414 | ||
Fine-tuning of the ribosomal decoding center by conserved methyl-modifications in the Escherichia coli 16S rRNA | Q24634123 | ||
The Pfam protein families database | Q24644670 | ||
Two D-2-hydroxy-acid dehydrogenases in Arabidopsis thaliana with catalytic capacities to participate in the last reactions of the methylglyoxal and beta-oxidation pathways | Q24657448 | ||
The use of gene clusters to infer functional coupling | Q24673189 | ||
The worldwide Protein Data Bank (wwPDB): ensuring a single, uniform archive of PDB data | Q24675361 | ||
The TIGRFAMs database of protein families | Q24681677 | ||
AMPDB: the Arabidopsis Mitochondrial Protein Database | Q24794285 | ||
Comprehensive de novo structure prediction in a systems-biology context for the archaea Halobacterium sp. NRC-1 | Q24797455 | ||
A Bayesian method for identifying missing enzymes in predicted metabolic pathway databases | Q24800167 | ||
Complete reannotation of the Arabidopsis genome: methods, tools, protocols and the final release | Q24804698 | ||
The subsystems approach to genome annotation and its use in the project to annotate 1000 genomes | Q24817116 | ||
The structure of theyrdCgene product fromEscherichia colireveals a new fold and suggests a role in RNA binding | Q27629871 | ||
The Structure of YqeH: AN AtNOS1/AtNOA1 ORTHOLOG THAT COUPLES GTP HYDROLYSIS TO MOLECULAR RECOGNITION | Q27652235 | ||
Clustal W and Clustal X version 2.0 | Q27860517 | ||
Protein structure prediction on the Web: a case study using the Phyre server | Q27860664 | ||
Tight regulation, modulation, and high-level expression by vectors containing the arabinose PBAD promoter | Q27860697 | ||
A Genomic Perspective on Protein Families | Q27860913 | ||
The universal YrdC/Sua5 family is required for the formation of threonylcarbamoyladenosine in tRNA. | Q27931264 | ||
Mitochondrial Iba57p is required for Fe/S cluster formation on aconitase and activation of radical SAM enzymes | Q27937403 | ||
An efficient algorithm for large-scale detection of protein families | Q28131838 | ||
Biosynthesis of N-(purin-6-ylcarbamoyl)-l-threonine riboside. Incorporation of l-threonine in vivo into modified nucleoside of transfer ribonucleic acid | Q28363530 | ||
Refinement of light-responsive transcript lists using rice oligonucleotide arrays: evaluation of gene-redundancy | Q28473725 | ||
Applications of genome-scale metabolic reconstructions | Q29031028 | ||
Contributions of Zur-controlled ribosomal proteins to growth under zinc starvation conditions | Q29346691 | ||
Multiple sequence alignment using ClustalW and ClustalX | Q29547698 | ||
Turning a hobby into a job: how duplicated genes find new functions | Q29615889 | ||
Conservation of gene order: a fingerprint of proteins that physically interact | Q29616049 | ||
GMD@CSB.DB: the Golm Metabolome Database | Q30482803 | ||
Improved annotation through genome-scale metabolic modeling of Aspergillus oryzae | Q30844098 | ||
Genome alignment, evolution of prokaryotic genome organization, and prediction of gene function using genomic context | Q30982525 | ||
Identifying metabolic enzymes with multiple types of association evidence | Q33237950 | ||
Oryza Tag Line, a phenotypic mutant database for the Genoplante rice insertion line library. | Q33303153 | ||
Identification of the putative tumor suppressor Nit2 as omega-amidase, an enzyme metabolically linked to glutamine and asparagine transamination | Q33481441 | ||
A subset of the diverse COG0523 family of putative metal chaperones is linked to zinc homeostasis in all kingdoms of life | Q33509905 | ||
CyanoBase: the cyanobacteria genome database update 2010. | Q33600527 | ||
Rational association of genes with traits using a genome-scale gene network for Arabidopsis thaliana | Q33801141 | ||
The MicrobesOnline Web site for comparative genomics | Q33891885 | ||
A role for tetrahydrofolates in the metabolism of iron-sulfur clusters in all domains of life. | Q33934805 | ||
Isolation and characterization of SUA5, a novel gene required for normal growth in Saccharomyces cerevisiae | Q33959700 | ||
GENEVESTIGATOR. Arabidopsis microarray database and analysis toolbox | Q33981484 | ||
Intrinsic errors in genome annotation | Q34085839 | ||
Expression Analysis of Up-Regulated Genes Responding to Plumbagin in Escherichia coli | Q34303218 | ||
Moonlighting glutamate formiminotransferases can functionally replace 5-formyltetrahydrofolate cycloligase | Q34438849 | ||
'Unknown' proteins and 'orphan' enzymes: the missing half of the engineering parts list--and how to find it | Q34497524 | ||
A role for the universal Kae1/Qri7/YgjD (COG0533) family in tRNA modification | Q34626470 | ||
Missing genes in metabolic pathways: a comparative genomics approach | Q35114448 | ||
The Arabidopsis Information Resource (TAIR): a model organism database providing a centralized, curated gateway to Arabidopsis biology, research materials and community | Q35158851 | ||
Finding novel metabolic genes through plant-prokaryote phylogenomics | Q36998627 | ||
Predicting protein function from sequence and structure | Q37014089 | ||
EcoCyc: a comprehensive view of Escherichia coli biology | Q37202580 | ||
Pseudomonas Genome Database: facilitating user-friendly, comprehensive comparisons of microbial genomes | Q37202614 | ||
PPDB, the Plant Proteomics Database at Cornell | Q37202732 | ||
ATTED-II provides coexpressed gene networks for Arabidopsis | Q37202743 | ||
6-pyruvoyltetrahydropterin synthase paralogs replace the folate synthesis enzyme dihydroneopterin aldolase in diverse bacteria | Q37232703 | ||
Crystal structure of the YgfZ protein from Escherichia coli suggests a folate-dependent regulatory role in one-carbon metabolism. | Q37583312 | ||
The YrdC protein--a putative ribosome maturation factor | Q38330528 | ||
Annotating genes of known and unknown function by large-scale coexpression analysis | Q38514183 | ||
Molecular identification of omega-amidase, the enzyme that is functionally coupled with glutamine transaminases, as the putative tumor suppressor Nit2. | Q39826010 | ||
The ORFanage: an ORFan database | Q40403571 | ||
Predicting protein function by genomic context: quantitative evaluation and qualitative inferences | Q40414366 | ||
Tight modulation of Escherichia coli bacterial biofilm formation through controlled expression of adhesion factors. | Q42031700 | ||
Plasmodium falciparum: a paradigm for alternative folate biosynthesis in diverse microorganisms? | Q42061540 | ||
Biosynthesis and specific labeling of N-(purin-6-ylcarbamoyl)threonine of Escherichiacoli transfer RNA | Q42233421 | ||
The enzymatic synthesis of N-(purin-6-ylcarbamoyl)threonine, an anticodon-adjacent base in transfer ribonucleic acid | Q42233759 | ||
An approach to pathway reconstruction using whole genome metabolic models and sensitive sequence searching | Q42648091 | ||
Chloroplast HCF101 is a scaffold protein for [4Fe-4S] cluster assembly | Q42938063 | ||
Arabidopsis OBG-like GTPase (AtOBGL) is localized in chloroplasts and has an essential function in embryo development | Q44054281 | ||
The chloroplast protein BPG2 functions in brassinosteroid-mediated post-transcriptional accumulation of chloroplast rRNA. | Q46057601 | ||
5-Formyltetrahydrofolate is an inhibitory but well tolerated metabolite in Arabidopsis leaves | Q46485947 | ||
Molecular identification of pseudouridine-metabolizing enzymes | Q46509634 | ||
Phylogenomic and functional analysis of pterin-4a-carbinolamine dehydratase family (COG2154) proteins in plants and microorganisms. | Q46775326 | ||
Involvement of the Escherichia coli folate-binding protein YgfZ in RNA modification and regulation of chromosomal replication initiation. | Q46854895 | ||
Citrovorum factor and the synthesis of formylglutamic acid. | Q55037119 | ||
Glutamate formyl- and formimino-transferase activities from pig liver | Q71820968 | ||
Errors in genome annotation | Q77326443 | ||
Identifying functional links between genes using conserved chromosomal proximity | Q77876822 | ||
The Botany Array Resource: e-Northerns, Expression Angling, and promoter analyses | Q81859888 | ||
P407 | language of work or name | English | Q1860 |
P921 | main subject | comparative genomics | Q1147112 |
P304 | page(s) | S2 | |
P577 | publication date | 2011-06-15 | |
P1433 | published in | BMC Genomics | Q15765854 |
P1476 | title | Synergistic use of plant-prokaryote comparative genomics for functional annotations | |
P478 | volume | 12 Suppl 1 |
Q35816844 | Captured metagenomics: large-scale targeting of genes based on 'sequence capture' reveals functional diversity in soils |
Q45031512 | Characterization of Arabidopsis serine:glyoxylate aminotransferase, AGT1, as an asparagine aminotransferase |
Q47136705 | Complete Genome Sequence of Delftia acidovorans RAY209, a Plant Growth-Promoting Rhizobacterium for Canola and Soybean |
Q47129838 | Confronting the catalytic dark matter encoded by sequenced genomes. |
Q27009453 | Diversity of the biosynthesis pathway for threonylcarbamoyladenosine (t(6)A), a universal modification of tRNA |
Q37131488 | Essentiality of threonylcarbamoyladenosine (t(6)A), a universal tRNA modification, in bacteria |
Q37293854 | Functional Annotations of Paralogs: A Blessing and a Curse |
Q35003987 | Functional genomics of novel secondary metabolites from diverse cyanobacteria using untargeted metabolomics. |
Q28283775 | Metabolite damage and its repair or pre-emption |
Q31119306 | Microbial Community Responses to Increased Water and Organic Matter in the Arid Soils of the McMurdo Dry Valleys, Antarctica |
Q39043899 | Slr0006-like proteins: A TsaC/TsaC2/YciO subfamily exclusive to cyanobacteria. |
Q33837744 | Systematic discovery of novel eukaryotic transcriptional regulators using sequence homology independent prediction |
Q44876881 | The MORPH algorithm: ranking candidate genes for membership in Arabidopsis and tomato pathways. |
Q26830669 | Variations in metabolic pathways create challenges for automated metabolic reconstructions: Examples from the tetrahydrofolate synthesis pathway |
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