| scholarly article | Q13442814 |
| P2093 | author name string | Tsutomu Suzuki | |
| Satoshi Kimura | |||
| P2860 | cites work | Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection | Q22122301 |
| Identification and characterization of RsmE, the founding member of a new RNA base methyltransferase family | Q24541405 | ||
| Biosynthesis of wybutosine, a hyper-modified nucleoside in eukaryotic phenylalanine tRNA | Q24544024 | ||
| The comparative RNA web (CRW) site: an online database of comparative sequence and structure information for ribosomal, intron, and other RNAs | Q24802442 | ||
| Structure of functionally activated small ribosomal subunit at 3.3 angstroms resolution | Q27627220 | ||
| Structure of the 30S ribosomal subunit | Q27627261 | ||
| Crystal structure of the ribosome at 5.5 A resolution | Q27630949 | ||
| Selection of tRNA by the ribosome requires a transition from an open to a closed form | Q27640089 | ||
| Methyltransferase That Modifies Guanine 966 of the 16 S rRNA: FUNCTIONAL IDENTIFICATION AND TERTIARY STRUCTURE | Q27640940 | ||
| Structural basis for translation termination on the 70S ribosome | Q27651016 | ||
| Insights into Translational Termination from the Structure of RF2 Bound to the Ribosome | Q27652801 | ||
| Tandem Mass Spectrometry of Small, Multiply Charged Oligonucleotides | Q61784590 | ||
| Rapid chemical probing of conformation in 16 S ribosomal RNA and 30 S ribosomal subunits using primer extension | Q68961173 | ||
| Clustering of modified nucleotides at the functional center of bacterial ribosomal RNA | Q70535951 | ||
| cytidine and other methyl-substituted nucleoside constituents of Escherichia coli ribosomal and soluble RNA | Q71202668 | ||
| rRNA modifications in an intersubunit bridge of the ribosome strongly affect both ribosome biogenesis and activity | Q80407834 | ||
| A conserved rRNA methyltransferase regulates ribosome biogenesis | Q81026237 | ||
| Comparative RNomics and modomics in Mollicutes: prediction of gene function and evolutionary implications | Q81243788 | ||
| Structure of the 70S ribosome complexed with mRNA and tRNA | Q27860602 | ||
| One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products | Q27860842 | ||
| A genomic perspective on protein families | Q27860913 | ||
| rRNA modifications and ribosome function | Q28610126 | ||
| Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research | Q29619122 | ||
| Role of 16S ribosomal RNA methylations in translation initiation in Escherichia coli | Q30481537 | ||
| A novel partial modification at C2501 in Escherichia coli 23S ribosomal RNA | Q33202950 | ||
| Conserved loop sequence of helix 69 in Escherichia coli 23 S rRNA is involved in A-site tRNA binding and translational fidelity | Q33240227 | ||
| YebU is a m5C methyltransferase specific for 16 S rRNA nucleotide 1407. | Q33242538 | ||
| A novel, simple, high-throughput method for isolation of genome-wide transposon insertion mutants of Escherichia coli K-12. | Q33327118 | ||
| An RNA-modifying enzyme that governs both the codon and amino acid specificities of isoleucine tRNA. | Q34267562 | ||
| Crystal structure of a 70S ribosome-tRNA complex reveals functional interactions and rearrangements | Q34564885 | ||
| Decoding fidelity at the ribosomal A and P sites: influence of mutations in three different regions of the decoding domain in 16S rRNA. | Q34626800 | ||
| Selective stabilization of mammalian microRNAs by 3' adenylation mediated by the cytoplasmic poly(A) polymerase GLD-2. | Q34951363 | ||
| Structural basis for mRNA and tRNA positioning on the ribosome | Q35127488 | ||
| A ribosomal ambiguity mutation in the 530 loop of E. coli 16S rRNA. | Q35925487 | ||
| Mutations within the decoding site of Escherichia coli 16S rRNA: growth rate impairment, lethality and intragenic suppression | Q36064086 | ||
| Methylation status of 13S ribosomal RNA from hamster mitochondria: the presence of a novel riboside, N4-methylcytidine | Q36188729 | ||
| The weird and wonderful world of bacterial ribosome regulation. | Q36846903 | ||
| Mass spectrometric identification and characterization of RNA-modifying enzymes | Q36900515 | ||
| Synthesis and solution conformation studies of the modified nucleoside N(4),2'-O-dimethylcytidine (m(4)Cm) and its analogues | Q36973295 | ||
| A structural view of translation initiation in bacteria | Q37326466 | ||
| The importance of individual nucleotides for the structure and function of rRNA molecules in E. coli. A mutagenesis study | Q38350636 | ||
| Point mutations in the 3' minor domain of 16S rRNA of E.coli. | Q40472790 | ||
| Control of translation initiation involves a factor-induced rearrangement of helix 44 of 16S ribosomal RNA | Q40501171 | ||
| Post-transcriptional modification mapping in the Clostridium acetobutylicum 16S rRNA by mass spectrometry and reverse transcriptase assays | Q41815823 | ||
| Quality control by the ribosome following peptide bond formation | Q42262773 | ||
| Mechanistic insight into the ribosome biogenesis functions of the ancient protein KsgA. | Q42921023 | ||
| Influence of phylogeny on posttranscriptional modification of rRNA in thermophilic prokaryotes: the complete modification map of 16S rRNA of Thermus thermophilus | Q43020097 | ||
| The 3D rRNA modification maps database: with interactive tools for ribosome analysis | Q43032876 | ||
| Translation ability of mitochondrial tRNAsSer with unusual secondary structures in an in vitro translation system of bovine mitochondria | Q43818063 | ||
| Escherichia coli translation initiation factor 3 discriminates the initiation codon in vivo | Q46736673 | ||
| Mechanistic insights into sulfur relay by multiple sulfur mediators involved in thiouridine biosynthesis at tRNA wobble positions | Q46875110 | ||
| The role of the AUU initiation codon in the negative feedback regulation of the gene for translation initiation factor IF3 in Escherichia coli. | Q48062355 | ||
| The A-site finger in 23 S rRNA acts as a functional attenuator for translocation. | Q51137492 | ||
| Translation initiation complex formation with 30 S ribosomal particles mutated at conserved positions in the 3'-minor domain of 16 S RNA. | Q52221669 | ||
| How initiation factors maximize the accuracy of tRNA selection in initiation of bacterial protein synthesis. | Q54459210 | ||
| Functional effects of base changes which further define the decoding center of Escherichia coli 16S ribosomal RNA: Mutation of C1404, G1405, C1496, G1497, and U1498 | Q54654363 | ||
| Interaction between the two conserved single-stranded regions at the decoding site of small subunit ribosomal RNA is essential for ribosome function | Q54667619 | ||
| Kinetic Checkpoint at a Late Step in Translation Initiation | Q59349064 | ||
| P433 | issue | 4 | |
| P407 | language of work or name | English | Q1860 |
| P921 | main subject | Escherichia coli | Q25419 |
| rRNA (cytosine-N4-)-methyltransferase activity | Q21120823 | ||
| P304 | page(s) | 1341-52 | |
| P577 | publication date | 2010-03-01 | |
| P1433 | published in | Nucleic Acids Research | Q135122 |
| P1476 | title | Fine-tuning of the ribosomal decoding center by conserved methyl-modifications in the Escherichia coli 16S rRNA | |
| P478 | volume | 38 |
| Q37412066 | A coordinated proteomic approach for identifying proteins that interact with the E. coli ribosomal protein S12. |
| Q27935338 | A cyclic form of N6-threonylcarbamoyladenosine as a widely distributed tRNA hypermodification. |
| Q38726215 | A pseudouridine synthase module is essential for mitochondrial protein synthesis and cell viability. |
| Q35084648 | Aminoglycoside resistance 16S rRNA methyltransferases block endogenous methylation, affect translation efficiency and fitness of the host. |
| Q64106177 | Assembly and functionality of the ribosome with tethered subunits |
| Q34243886 | Base methylations in the double-stranded RNA by a fused methyltransferase bearing unwinding activity |
| Q91670298 | Beyond a Ribosomal RNA Methyltransferase, the Wider Role of MraW in DNA Methylation, Motility and Colonization in Escherichia coli O157:H7 |
| Q49249941 | Biofilm Formation and Motility Are Promoted by Cj0588-Directed Methylation of rRNA in Campylobacter jejuni |
| Q91717647 | Biogenesis and functions of aminocarboxypropyluridine in tRNA |
| Q36532690 | Biogenesis and growth phase-dependent alteration of 5-methoxycarbonylmethoxyuridine in tRNA anticodons. |
| Q47099790 | Biogenesis and iron-dependency of ribosomal RNA hydroxylation |
| Q42869132 | Characterization of methyltransferase properties of Escherichia coli YabC protein with an enzyme-coupled colorimetric assay |
| Q89879101 | Comparative Genomics and Evolutionary Analysis of RNA-Binding Proteins of Burkholderia cenocepacia J2315 and Other Members of the B. cepacia Complex |
| Q64064944 | Comparative genome sequencing and analyses of Mycobacterium cosmeticum reveal potential for biodesulfization of gasoline |
| Q90345507 | Comprehensive Functional Analysis of Escherichia coli Ribosomal RNA Methyltransferases |
| Q28508971 | Deficit of tRNA(Lys) modification by Cdkal1 causes the development of type 2 diabetes in mice |
| Q57258751 | Differentiating Positional Isomers of Nucleoside Modifications by Higher-Energy Collisional Dissociation Mass Spectrometry (HCD MS) |
| Q30503961 | Discovering novel subsystems using comparative genomics |
| Q28117728 | Discovery of the β-barrel-type RNA methyltransferase responsible for N6-methylation of N6-threonylcarbamoyladenosine in tRNAs |
| Q93116242 | Dual pathways of tRNA hydroxylation ensure efficient translation by expanding decoding capability |
| Q33989831 | Evolutionary and sequence-based relationships in bacterial AdoMet-dependent non-coding RNA methyltransferases |
| Q35588485 | Exploring regulation genes involved in the expression of L-amino acid oxidase in Pseudoalteromonas sp. Rf-1 |
| Q34157970 | Fitness cost and interference of Arm/Rmt aminoglycoside resistance with the RsmF housekeeping methyltransferases |
| Q38164814 | Functional implications of ribosomal RNA methylation in response to environmental stress. |
| Q37335829 | Functional role of methylation of G518 of the 16S rRNA 530 loop by GidB in Mycobacterium tuberculosis |
| Q35549350 | General and condition-specific essential functions of Pseudomonas aeruginosa |
| Q41873656 | How much can we learn about the function of bacterial rRNA modification by mining large-scale experimental datasets? |
| Q36228529 | Impact of methylations of m2G966/m5C967 in 16S rRNA on bacterial fitness and translation initiation |
| Q34944201 | Indigenous and acquired modifications in the aminoglycoside binding sites of Pseudomonas aeruginosa rRNAs |
| Q42062188 | Intrinsic resistance to aminoglycosides in Enterococcus faecium is conferred by the 16S rRNA m5C1404-specific methyltransferase EfmM |
| Q42277799 | Is the cellular initiation of translation an exclusive property of the initiator tRNAs? |
| Q58540266 | Landscape of the complete RNA chemical modifications in the human 80S ribosome |
| Q39990585 | Loss of ribosomal RNA modification causes developmental defects in zebrafish |
| Q34298008 | Methylation by NSun2 represses the levels and function of microRNA 125b |
| Q36460808 | NSun2 delays replicative senescence by repressing p27 (KIP1) translation and elevating CDK1 translation |
| Q35891241 | Pangenome-wide and molecular evolution analyses of the Pseudomonas aeruginosa species. |
| Q47548659 | Positive-sense RNA viruses reveal the complexity and dynamics of the cellular and viral epitranscriptomes during infection. |
| Q36931008 | Probing the stabilizing effects of modified nucleotides in the bacterial decoding region of 16S ribosomal RNA. |
| Q49588262 | Pseudouridine-Free Escherichia coli Ribosomes |
| Q34148040 | Purification, crystallization and preliminary crystallographic analysis of the 16S rRNA methyltransferase RsmI from Escherichia coli. |
| Q38732764 | Quantitative analysis of rRNA modifications using stable isotope labeling and mass spectrometry |
| Q37190004 | RNA methyltransferase NSUN2 promotes stress-induced HUVEC senescence |
| Q41308013 | Ribosomal RNA methyltransferases contribute to Staphylococcus aureus virulence |
| Q35165337 | Site-directed mutants of 16S rRNA reveal important RNA domains for KsgA function and 30S subunit assembly |
| Q57898552 | Small genomes and the difficulty to define minimal translation and metabolic machineries |
| Q27667611 | Structural Basis for Methyl Transfer by a Radical SAM Enzyme |
| Q28554538 | Structural Insights into the Methylation of C1402 in 16S rRNA by Methyltransferase RsmI |
| Q50001674 | Structural and evolutionary insights into ribosomal RNA methylation. |
| Q35461481 | Structural insights into the role of rRNA modifications in protein synthesis and ribosome assembly |
| Q27698054 | Structure of the E. coli ribosome-EF-Tu complex at <3 Å resolution by Cs-corrected cryo-EM |
| Q27677448 | Structure of the bifunctional methyltransferase YcbY (RlmKL) that adds the m7G2069 and m2G2445 modifications in Escherichia coli 23S rRNA |
| Q42425630 | Subribosomal particle analysis reveals the stages of bacterial ribosome assembly at which rRNA nucleotides are modified |
| Q33978848 | Synergistic use of plant-prokaryote comparative genomics for functional annotations |
| Q36246613 | The Escherichia coli RlmN methyltransferase is a dual-specificity enzyme that modifies both rRNA and tRNA and controls translational accuracy. |
| Q34497409 | The aminoglycoside resistance methyltransferases from the ArmA/Rmt family operate late in the 30S ribosomal biogenesis pathway |
| Q89870676 | The critical function of the plastid rRNA methyltransferase, CMAL, in ribosome biogenesis and plant development |
| Q83231453 | The genomes of polyextremophilic cyanidiales contain 1% horizontally transferred genes with diverse adaptive functions |
| Q33570127 | The highly conserved MraZ protein is a transcriptional regulator in Escherichia coli |
| Q41768024 | The last rRNA methyltransferase of E. coli revealed: the yhiR gene encodes adenine-N6 methyltransferase specific for modification of A2030 of 23S ribosomal RNA. |
| Q27689443 | The structure of Rv2372c identifies an RsmE-like methyltransferase from Mycobacterium tuberculosis |
| Q36431161 | The tRNA methyltransferase NSun2 stabilizes p16INK⁴ mRNA by methylating the 3'-untranslated region of p16 |
| Q63938338 | Translation initiation factor IF2 contributes to ribosome assembly and maturation during cold adaptation. |
| Q34232122 | YhiQ is RsmJ, the methyltransferase responsible for methylation of G1516 in 16S rRNA of E. coli |
| Q26738559 | mRNA methylation by NSUN2 in cell proliferation |
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