| scholarly article | Q13442814 |
| P8978 | DBLP publication ID | journals/nar/BatemanBDEFS99 |
| P356 | DOI | 10.1093/NAR/27.1.260 |
| P8608 | Fatcat ID | release_xspfhcqbbbcifpuqfg5x3nugim |
| P932 | PMC publication ID | 148151 |
| P698 | PubMed publication ID | 9847196 |
| P5875 | ResearchGate publication ID | 220580745 |
| P50 | author | Ewan Birney | Q4869199 |
| Richard M. Durbin | Q4583003 | ||
| Alex Bateman | Q18921408 | ||
| P2093 | author name string | R D Finn | |
| S R Eddy | |||
| E L Sonnhammer | |||
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| P433 | issue | 1 | |
| P407 | language of work or name | English | Q1860 |
| P304 | page(s) | 260-2 | |
| P577 | publication date | 1999-01-01 | |
| P1433 | published in | Nucleic Acids Research | Q135122 |
| P1476 | title | Pfam 3.1: 1313 multiple alignments and profile HMMs match the majority of proteins | |
| P478 | volume | 27 |
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| Q22254156 | A novel human tocopherol-associated protein: cloning, in vitro expression, and characterization |
| Q28140347 | A novel pro-Arg motif recognized by WW domains |
| Q40387504 | A putative endosomal t-SNARE links exo- and endocytosis in the phytopathogenic fungus Ustilago maydis |
| Q39770105 | A re-annotation of the Saccharomyces cerevisiae genome. |
| Q24678333 | A robust species tree for the alphaproteobacteria |
| Q27477549 | A second, non-canonical RNA-dependent RNA polymerase in SARS Coronavirus |
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| Q24273426 | A visual intracellular classification strategy for uncharacterized human proteins |
| Q24337274 | A-kinase-interacting protein localizes protein kinase A in the nucleus |
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| Q34392946 | Accurate discrimination of bHLH domains in plants, animals, and fungi using biologically meaningful sites |
| Q34282429 | Advances in sequence analysis |
| Q48740155 | Aldehyde dehydrogenase gene superfamily: the 2000 update. |
| Q47406176 | Aldehyde dehydrogenase gene superfamily: the 2002 update |
| Q34909357 | Allying with armored snails: the complete genome of gammaproteobacterial endosymbiont |
| Q39708565 | Aminopeptidase C of Aspergillus niger is a novel phenylalanine aminopeptidase |
| Q43933340 | An ABC transporter complex containing S-adenosylmethionine (SAM)-induced ATP-binding protein is involved in antibiotics production and SAM signaling in Streptomyces coelicolor M145. |
| Q30764357 | An exploration of the sequence of a 2.9-Mb region of the genome of Drosophila melanogaster: the Adh region |
| Q46426880 | Analysis of Nicotiana tabacum PIN genes identifies NtPIN4 as a key regulator of axillary bud growth. |
| Q32147875 | Analysis of transcriptomes of human malaria parasite Plasmodium falciparum using full-length enriched library: identification of novel genes and diverse transcription start sites of messenger RNAs |
| Q33941611 | Annotating eukaryote genomes |
| Q30964942 | Antigenicity, expression, and molecular characterization of surface-located pullulanase of Streptococcus pneumoniae |
| Q30329571 | Application of PROSPECT in CASP4: characterizing protein structures with new folds. |
| Q35671178 | Application of a hierarchical enzyme classification method reveals the role of gut microbiome in human metabolism. |
| Q59465524 | Approximate symbolic pattern matching for protein sequence data |
| Q52094831 | Arabidopsis ALF4 encodes a nuclear-localized protein required for lateral root formation. |
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| Q43981840 | CancerProView: a graphical image database of cancer-related genes and proteins |
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| Q44652008 | CbiX-homologous protein (CbiXhp), a metal-binding protein, from Streptomyces seoulensis is involved in expression of nickel-containing superoxide dismutase. |
| Q28200118 | Characterisation of the human APC1, the largest subunit of the anaphase-promoting complex |
| Q24564924 | Characterization and Pathogenic Significance of Vibrio vulnificus Antigens Preferentially Expressed in Septicemic Patients |
| Q40659489 | Characterization and primary structures of bovine and porcine thyroxine-binding globulin |
| Q43993989 | Characterization of FRO1, a pea ferric-chelate reductase involved in root iron acquisition |
| Q42056828 | Characterization of JDP genes, an evolutionarily conserved J domain-only protein family, from human and moths |
| Q24292350 | Characterizing CGI-94 (comparative gene identification-94) which is down-regulated in the hippocampus of early stage Alzheimer's disease brain |
| Q24318664 | Characterizing the new transcription regulator protein p60TRP |
| Q30973702 | Cloning and characterisation of a putative ST2L homologue from Atlantic salmon (Salmo salar). |
| Q30975538 | Cloning and characterization of the rainbow trout (Oncorhynchus mykiss) type II interleukin-1 receptor cDNA. |
| Q31043910 | Cloning of a Salmo salar interleukin-1 receptor-like cDNA. |
| Q33616982 | Common fold in helix-hairpin-helix proteins |
| Q90012588 | Comparative Genomics, Whole-Genome Re-sequencing and Expression Profile Analysis of Nucleobase:Cation Symporter 2 (NCS2) Genes in Maize |
| Q24624130 | Comparative genome sequence analysis of the Bpa/Str region in mouse and Man |
| Q29547504 | Comparative genomics of the eukaryotes |
| Q22122399 | Complete DNA sequence of a serogroup A strain of Neisseria meningitidis Z2491 |
| Q39852956 | Complete genome sequence of the broad-host-range vibriophage KVP40: comparative genomics of a T4-related bacteriophage |
| Q24797455 | Comprehensive de novo structure prediction in a systems-biology context for the archaea Halobacterium sp. NRC-1 |
| Q30156860 | Computational protein design: validation and possible relevance as a tool for homology searching and fold recognition |
| Q57246868 | Conserved structural modules and bonding networks in isopenicillin N synthase related non-haem iron-dependent oxygenases and oxidases |
| Q38437099 | Consistent integration of non-reliable heterogeneous information resources applied to the annotation of transmembrane proteins. |
| Q42614475 | Coverage of protein sequence space by current structural genomics targets |
| Q27631597 | Crystal structure of a Pumilio homology domain |
| Q27618582 | Crystal structure of a phosphatidylinositol 3-phosphate-specific membrane-targeting motif, the FYVE domain of Vps27p |
| Q27640314 | Crystal structure of tabtoxin resistance protein complexed with acetyl coenzyme A reveals the mechanism for beta-lactam acetylation |
| Q27639897 | Crystal structure of the (R)-specific enoyl-CoA hydratase from Aeromonas caviae involved in polyhydroxyalkanoate biosynthesis |
| Q52570784 | Crystal structure of the DNA-binding domain of BldD, a central regulator of aerial mycelium formation in Streptomyces coelicolor A3(2). |
| Q24600266 | Crystal structure of the catalytic domain of human complement c1s: a serine protease with a handle |
| Q27639952 | Crystal structure of the human supernatant protein factor |
| Q27641905 | Crystal structures of human DJ-1 and Escherichia coli Hsp31, which share an evolutionarily conserved domain |
| Q44398269 | Cyanobacterial alkaline/neutral invertases. Origin of sucrose hydrolysis in the plant cytosol? |
| Q22122394 | DNA sequence of both chromosomes of the cholera pathogen Vibrio cholerae |
| Q30950339 | Data mining tools for biological sequences |
| Q56999399 | De Novo Prediction of Three-dimensional Structures for Major Protein Families |
| Q56999368 | Deciphering a novel thioredoxin-like fold family |
| Q35036003 | Decoding the ubiquitin-mediated pathway of arthropod disease vectors. |
| Q35870250 | Deep-sea vent epsilon-proteobacterial genomes provide insights into emergence of pathogens |
| Q33944363 | Definition of EGF-like, closely interacting modules that bear activation epitopes in integrin beta subunits |
| Q30979207 | Designing repeat proteins: well-expressed, soluble and stable proteins from combinatorial libraries of consensus ankyrin repeat proteins. |
| Q52076586 | Detection of protein coding sequences using a mixture model for local protein amino acid sequence. |
| Q42654611 | Dipeptide frequency/bias analysis identifies conserved sites of nonrandomness shared by cysteine-rich motifs |
| Q34147118 | Domain organization of D-AKAP2 revealed by enhanced deuterium exchange-mass spectrometry (DXMS). |
| Q22065726 | Dothideomycete plant interactions illuminated by genome sequencing and EST analysis of the wheat pathogen Stagonospora nodorum |
| Q41935341 | Double-stranded DNA bacteriophage prohead protease is homologous to herpesvirus protease |
| Q27622699 | Drosophila dumpy is a gigantic extracellular protein required to maintain tension at epidermal-cuticle attachment sites |
| Q40414055 | Drosophila genomic sequence annotation using the BLOCKS+ database |
| Q24791911 | Effectiveness of specific RNA-mediated interference through ingested double-stranded RNA in Caenorhabditis elegans |
| Q63355503 | Elicitin genes in Phytophthora infestans are clustered and interspersed with various transposon-like elements. |
| Q44100726 | Evidence for Cu(I)-thiolate ligation and prediction of a putative copper-binding site in the Escherichia coli NADH dehydrogenase-2. |
| Q30873629 | Evolution of domain families |
| Q74103023 | Expanding the nitrogen regulatory protein superfamily: Homology detection at below random sequence identity |
| Q54749499 | Expression of prestin, a membrane motor protein, in the mammalian auditory and vestibular periphery. |
| Q57444244 | FAT: a novel domain in PIK-related kinases |
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| Q24630827 | FIZZ1, a novel cysteine-rich secreted protein associated with pulmonary inflammation, defines a new gene family |
| Q34346637 | Finding drug targets in microbial genomes |
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| Q60162505 | Folding studies of immunoglobulin-like β-sandwich proteins suggest that they share a common folding pathway |
| Q42625006 | Formin-2, a novel formin homology protein of the cappuccino subfamily, is highly expressed in the developing and adult central nervous system |
| Q30651543 | From complete genomes to measures of substitution rate variability within and between proteins |
| Q30326815 | From fold recognition to homology modeling: an analysis of protein modeling challenges at different levels of prediction complexity. |
| Q30322099 | From protein structure to function. |
| Q30444393 | Functional characterization of spliceosomal introns and identification of U2, U4, and U5 snRNAs in the deep-branching eukaryote Entamoeba histolytica |
| Q38269060 | Functional control of the binuclear metal site in the metallo-beta-lactamase-like fold by subtle amino acid replacements |
| Q40646212 | Functional domains of chicken mitochondrial transcription factor A for the maintenance of mitochondrial DNA copy number in lymphoma cell line DT40. |
| Q39860909 | GFScan: a gene family search tool at genomic DNA level |
| Q33928362 | GGDEF domain is homologous to adenylyl cyclase |
| Q38455202 | GNARE: automated system for high-throughput genome analysis with grid computational backend |
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| Q22066214 | Genome sequence of the hyperthermophilic crenarchaeon Pyrobaculum aerophilum |
| Q35740567 | Genome sequencing of the lizard parasite Leishmania tarentolae reveals loss of genes associated to the intracellular stage of human pathogenic species |
| Q42014268 | Genome-wide analysis of the ATP-binding cassette (ABC) transporter gene family in the silkworm, Bombyx mori |
| Q24329178 | Genomic identification and biochemical characterization of the mammalian polyamine oxidase involved in polyamine back-conversion |
| Q28204842 | Genomic sequence and expression analyses of human chromatin assembly factor 1 p150 gene |
| Q30919674 | Genomic sequence of a 320-kb segment of the Z chromosome of Bombyx mori containing a kettin ortholog. |
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| Q39541392 | HUGE: a database for human large proteins identified in the Kazusa cDNA sequencing project |
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| Q28142464 | Identification and analysis of two snail genes in the pufferfish (Fugu rubripes) and mapping of human SNA to 20q |
| Q44605325 | Identification and characterization of a novel autolysin (Aae) with adhesive properties from Staphylococcus epidermidis |
| Q24534758 | Identification and characterization of a novel flavin-containing spermine oxidase of mammalian cell origin |
| Q39535167 | Identification and comparative analysis of the chloroplast alpha-subunit gene of DNA-dependent RNA polymerase from seven Euglena species |
| Q33568869 | Identification of a nematode chemosensory gene family |
| Q34112326 | Identification of a ubiquitin-protein ligase subunit within the CCR4-NOT transcription repressor complex |
| Q30478961 | Identification of ciliary and ciliopathy genes in Caenorhabditis elegans through comparative genomics |
| Q28203916 | Identification of genes induced in peripheral nerve after injury. Expression profiling and novel gene discovery |
| Q92190975 | Identifying Acetylation Protein by Fusing Its PseAAC and Functional Domain Annotation |
| Q39541335 | Increased coverage of protein families with the blocks database servers |
| Q39146448 | Inferring Function from Homology |
| Q30333153 | Insights into protein-protein binding by binding free energy calculation and free energy decomposition for the Ras-Raf and Ras-RalGDS complexes. |
| Q43127579 | Inventory and analysis of ATP-binding cassette (ABC) systems in Brugia malayi |
| Q24291980 | Isolation and characterization of a novel class II histone deacetylase, HDAC10 |
| Q47072869 | Isolation of proteins that interact with the signal transduction molecule Dof and identification of a functional domain conserved between Dof and vertebrate BCAP. |
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| Q34607606 | Maize R2R3 Myb genes: Sequence analysis reveals amplification in the higher plants |
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| Q30327431 | Methodologies for target selection in structural genomics. |
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| Q27639552 | Modular recognition of RNA by a human pumilio-homology domain |
| Q64908122 | Molecular aspects of bacterial nanocellulose biosynthesis. |
| Q42638809 | Molecular characterization and distribution of the opioid growth factor receptor (OGFr) in mouse |
| Q47859904 | Molecular characterization of a calmodulin-like dictyostelium protein CalB. |
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| Q33649790 | More than 1,001 problems with protein domain databases: transmembrane regions, signal peptides and the issue of sequence homology |
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| Q24311645 | NGEP, a gene encoding a membrane protein detected only in prostate cancer and normal prostate |
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| Q39587545 | Novel genes coding for lithotrophic sulfur oxidation of Paracoccus pantotrophus GB17. |
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| Q24809633 | Optimal cDNA microarray design using expressed sequence tags for organisms with limited genomic information |
| Q52072060 | Optimization of a new score function for the detection of remote homologs. |
| Q33242480 | Optimizing amino acid substitution matrices with a local alignment kernel |
| Q34016309 | PATE, a gene expressed in prostate cancer, normal prostate, and testis, identified by a functional genomic approach |
| Q30164327 | PFIT and PFRIT: bioinformatic algorithms for detecting glycosidase function from structure and sequence |
| Q33883200 | PRINTS-S: the database formerly known as PRINTS. |
| Q24813267 | PRODOC: a resource for the comparison of tethered protein domain architectures with in-built information on remotely related domain families |
| Q38679170 | PartsList: a web-based system for dynamically ranking protein folds based on disparate attributes, including whole-genome expression and interaction information |
| Q50110817 | Performance evaluation of a new algorithm for the detection of remote homologs with sequence comparison |
| Q31033158 | Phamerator: a bioinformatic tool for comparative bacteriophage genomics |
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| Q47637567 | Prediction of protein-protein interaction networks. |
| Q30168358 | Prediction of the transmembrane regions of beta-barrel membrane proteins with a neural network-based predictor |
| Q33610921 | ProClass protein family database |
| Q39541659 | ProDom and ProDom-CG: tools for protein domain analysis and whole genome comparisons |
| Q24646993 | Profile-profile comparisons by COMPASS predict intricate homologies between protein families |
| Q35691772 | Protein databases on the internet |
| Q46971759 | Protein databases on the internet |
| Q33653412 | Protein families in multicellular organisms |
| Q33928581 | Protein sequence databases |
| Q33899394 | Proteins binding to duplexed RNA: one motif, multiple functions |
| Q39541528 | ProtoMap: automatic classification of protein sequences and hierarchy of protein families |
| Q33293617 | Quantitative sequence-function relationships in proteins based on gene ontology |
| Q60448552 | Rapid identification of novel protein families using similarity searches |
| Q24803016 | Re-annotation of genome microbial coding-sequences: finding new genes and inaccurately annotated genes |
| Q34020017 | Recent developments and future directions in computational genomics |
| Q36022098 | Recognition models to predict DNA-binding specificities of homeodomain proteins |
| Q43847232 | Recognizing complex, asymmetric functional sites in protein structures using a Bayesian scoring function |
| Q33609772 | SENTRA, a database of signal transduction proteins |
| Q48127493 | SWI3 subunits of putative SWI/SNF chromatin-remodeling complexes play distinct roles during Arabidopsis development |
| Q33928598 | Searching databases to find protein domain organization |
| Q57025048 | Sec14p-like domains in NF1 and Dbl-like proteins indicate lipid regulation of Ras and Rho signaling |
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| Q33994952 | Sequence of the genome of Salmonella bacteriophage P22 |
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| Q27631711 | Specificity determinants in phosphoinositide dephosphorylation: crystal structure of an archetypal inositol polyphosphate 5-phosphatase |
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| Q48008000 | Structural location of disease-associated single-nucleotide polymorphisms |
| Q24311521 | Structure and site-specific recognition of histone H3 by the PHD finger of human autoimmune regulator |
| Q24657871 | Structure of Bacillus subtilis YXKO--a member of the UPF0031 family and a putative kinase |
| Q24631262 | Structure of the GAF domain, a ubiquitous signaling motif and a new class of cyclic GMP receptor |
| Q53891195 | Structure of the adenovirus E4 Orf6 protein predicted by fold recognition and comparative protein modeling. |
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| Q38088802 | Systems biology of cyanobacterial secondary metabolite production and its role in drug discovery. |
| Q28752619 | TFCat: the curated catalog of mouse and human transcription factors |
| Q97556089 | Telomere-to-telomere assembly of a complete human X chromosome |
| Q52109142 | The Arabidopsis STICHEL gene is a regulator of trichome branch number and encodes a novel protein. |
| Q24543516 | The Arabidopsis sex1 mutant is defective in the R1 protein, a general regulator of starch degradation in plants, and not in the chloroplast hexose transporter |
| Q28144356 | The BNIP-2 and Cdc42GAP homology domain of BNIP-2 mediates its homophilic association and heterophilic interaction with Cdc42GAP |
| Q24290785 | The C-terminus of human glutaminase L mediates association with PDZ domain-containing proteins |
| Q47621170 | The CATH Dictionary of Homologous Superfamilies (DHS): a consensus approach for identifying distant structural homologues |
| Q28139873 | The DNA sequence of human chromosome 22 |
| Q28202145 | The Drosophila VEGF receptor homolog is expressed in hemocytes |
| Q40387067 | The Drosophila caspase DRONC is regulated by DIAP1 |
| Q24563921 | The Ensembl core software libraries |
| Q33611451 | The IDB and IEDB: intron sequence and evolution databases |
| Q56762869 | The Impact of Genomics on Drug Discovery |
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| Q35654649 | The Orphan G Protein-Coupled Receptor Gene GPR178 Is Evolutionary Conserved and Altered in Response to Acute Changes in Food Intake |
| Q28143441 | The PLAT domain: a new piece in the PKD1 puzzle |
| Q27861012 | The Pfam protein families database. |
| Q24515308 | The SBASE protein domain library, release 7.0: a collection of annotated protein sequence segments |
| Q39541174 | The SYSTERS protein sequence cluster set. |
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| Q22065997 | The complete genome sequence of the murine respiratory pathogen Mycoplasma pulmonis |
| Q47937315 | The complete nucleotide sequence of chromosome 3 of Plasmodium falciparum |
| Q34588175 | The diversity of retrotransposons and the properties of their reverse transcriptases |
| Q48351976 | The evolutionary origins of eukaryotic protein disulfide isomerase domains: new evidence from the Amitochondriate protist Giardia lamblia. |
| Q39680527 | The first archaeal ATP-dependent glucokinase, from the hyperthermophilic crenarchaeon Aeropyrum pernix, represents a monomeric, extremely thermophilic ROK glucokinase with broad hexose specificity |
| Q22065764 | The genome sequence of Mycoplasma mycoides subsp. mycoides SC type strain PG1T, the causative agent of contagious bovine pleuropneumonia (CBPP) |
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| Q22122402 | The genome sequence of the food-borne pathogen Campylobacter jejuni reveals hypervariable sequences |
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| Q33946932 | The multifunctional Staphylococcus aureus autolysin aaa mediates adherence to immobilized fibrinogen and fibronectin |
| Q47814074 | The murine DSCR1-like (Down syndrome candidate region 1) gene family: conserved synteny with the human orthologous genes. |
| Q34009315 | The opdB locus encodes the trypsin-like peptidase activity of Treponema denticola |
| Q45254169 | The palm subdomain-based active site is internally permuted in viral RNA-dependent RNA polymerases of an ancient lineage |
| Q34575910 | The phosphatidylinositol 3-phosphate-binding FYVE finger |
| Q33845322 | The quest to deduce protein function from sequence: the role of pattern databases. |
| Q33883707 | The role SWISS-PROT and TrEMBL play in the genome research environment. |
| Q33381576 | The rough guide to in silico function prediction, or how to use sequence and structure information to predict protein function |
| Q34499952 | The transcription regulator RbsR represents a novel interaction partner of the phosphoprotein HPr-Ser46-P in Bacillus subtilis |
| Q30167897 | The ubc2 gene of Ustilago maydis encodes a putative novel adaptor protein required for filamentous growth, pheromone response and virulence |
| Q43764719 | The urokinase plasminogen activator receptor-associated protein/endo180 is coexpressed with its interaction partners urokinase plasminogen activator receptor and matrix metalloprotease-13 during osteogenesis |
| Q28145061 | The whey acidic protein family: a new signature motif and three-dimensional structure by comparative modeling |
| Q57976989 | The yeast exchange assay, a new complementary method to screen for Dbl-like protein specificity: identification of a novel RhoA exchange factor |
| Q80608083 | Three dimensional structure of human biotinidase: computer modeling and functional correlations |
| Q48278320 | Titins in C.elegans with unusual features: coiled-coil domains, novel regulation of kinase activity and two new possible elastic regions |
| Q33489046 | Transcriptome analysis of Taenia solium cysticerci using Open Reading Frame ESTs (ORESTES). |
| Q51330979 | Translocation from nuclei to cytoplasm is necessary for anti A-PCD activity and turnover of the Type II IAP BcBir1. |
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