Prediction of an HMG-box fold in the C-terminal domain of histone H1: insights into its role in DNA condensation.

scientific article published on October 2002

Prediction of an HMG-box fold in the C-terminal domain of histone H1: insights into its role in DNA condensation. is …
instance of (P31):
scholarly articleQ13442814

External links are
P356DOI10.1002/PROT.10204
P698PubMed publication ID12211017
P5875ResearchGate publication ID11178076

P50authorNagasuma ChandraQ47455130
P2093author name stringM R S Rao
M M Srinivas Bharath
P2860cites workCrystal structure of the nucleosome core particle at 2.8 A resolutionQ22122355
CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choiceQ24286950
Gapped BLAST and PSI-BLAST: a new generation of protein database search programsQ24545170
What determines the folding of the chromatin fiber?Q24602085
The COG database: new developments in phylogenetic classification of proteins from complete genomesQ24605347
The structure of a chromosomal high mobility group protein-DNA complex reveals sequence-neutral mechanisms important for non-sequence-specific DNA recognitionQ27620533
Structural basis for DNA bending by the architectural transcription factor LEF-1Q27729834
Molecular basis of human 46X,Y sex reversal revealed from the three-dimensional solution structure of the human SRY-DNA complexQ27730262
Crystal structure of globular domain of histone H5 and its implications for nucleosome bindingQ27732024
Mapping the protein universeQ27861112
The InterPro database, an integrated documentation resource for protein families, domains and functional sitesQ28140863
Protein structure prediction and structural genomicsQ28190526
Pfam 3.1: 1313 multiple alignments and profile HMMs match the majority of proteinsQ28291030
Linker histones are not essential and affect chromatin condensation in vivoQ28293043
Induction of secondary structure in a COOH-terminal peptide of histone H1 by interaction with the DNA: an infrared spectroscopy studyQ28910176
Homo- and heteronuclear two-dimensional NMR studies of the globular domain of histone H1: Sequential assignment and secondary structureQ29396509
Enhanced genome annotation using structural profiles in the program 3D-PSSMQ29547847
Recent improvements to the SMART domain-based sequence annotation resourceQ29614230
PHD: predicting one-dimensional protein structure by profile-based neural networksQ29614390
NPS@: network protein sequence analysisQ29616421
A graphics model building and refinement system for macromoleculesQ29642804
The 2000 Olympic Games of protein structure prediction; fully automated programs are being evaluated vis-à-vis human teams in the protein structure prediction experiment CAFASP2.Q30327606
Successful protein fold recognition by optimal sequence threading validated by rigorous blind testingQ30424396
Direct detection of linker DNA bending in defined-length oligomers of chromatinQ33821984
GGDEF domain is homologous to adenylyl cyclaseQ33928362
Three-dimensional structure of extended chromatin fibers as revealed by tapping-mode scanning force microscopyQ35926293
The DNA-bending protein HMG-1 enhances progesterone receptor binding to its target DNA sequencesQ36653016
Regulation of the higher-order structure of chromatin by histones H1 and H5Q36659577
Condensation of DNA and chromatin by an SPKK-containing octapeptide repeat motif present in the C-terminus of histone H1.Q38348555
SOPM: a self-optimized method for protein secondary structure predictionQ38568739
Chromatin architectural proteins and transcription factors: a structural connectionQ41130996
Linker histone-dependent DNA structure in linear mononucleosomes.Q41634090
A helix-turn motif in the C-terminal domain of histone H1.Q42125000
Identification of a 34 amino acid stretch within the C-terminus of histone H1 as the DNA-condensing domain by site-directed mutagenesis.Q44022502
Condensation of DNA by the C-terminal domain of histone H1. A circular dichroism studyQ44252124
Domain structure in high molecular weight high mobility group nonhistone chromatin proteinsQ47262339
Dinucleosomes show compaction by ionic strength, consistent with bending of linker DNA.Q47708879
Improved performance in protein secondary structure prediction by inhomogeneous score combination.Q52212323
Incorporation of non-local interactions in protein secondary structure prediction from the amino acid sequence.Q52310809
GOR method for predicting protein secondary structure from amino acid sequence.Q52319038
Electrostatic mechanism of chromatin folding.Q52484628
Preferential condensation of SAR-DNA by histone H1 and its SPKK containing octapeptide repeat motif.Q52552099
An NMR study on the DNA-binding SPKK motif and a model for its interaction with DNA.Q54057452
Linker histones inhibit T4 and Escherichia coli DNA ligases.Q54588482
P433issue1
P407language of work or nameEnglishQ1860
P304page(s)71-81
P577publication date2002-10-01
P1433published inProteinsQ7251514
P1476titlePrediction of an HMG-box fold in the C-terminal domain of histone H1: insights into its role in DNA condensation
P478volume49

Reverse relations

cites work (P2860)
Q57038753A K52Q substitution in the globular domain of histone H1t modulates its nucleosome binding properties
Q43115780A tale of tails: how histone tails mediate chromatin compaction in different salt and linker histone environments
Q38320362Binding of barrier to autointegration factor (BAF) to histone H3 and selected linker histones including H1.1.
Q36558305C-terminal low-complexity sequence repeats of Mycobacterium smegmatis Ku modulate DNA binding
Q36305583Crucial role of dynamic linker histone binding and divalent ions for DNA accessibility and gene regulation revealed by mesoscale modeling of oligonucleosomes
Q28910207DNA-induced secondary structure of the carboxyl-terminal domain of histone H1
Q42719874Dynamic condensation of linker histone C-terminal domain regulates chromatin structure.
Q41846376Effects of TGF-beta1 Ribbon Antisense on CCl(4)-induced Liver Fibrosis
Q40661297Expression of the human oestrogen receptor-alpha gene is regulated by promoter F in MG-63 osteoblastic cells
Q42645275Expression profiles of a banana fruit linker histone H1 gene MaHIS1 and its interaction with a WRKY transcription factor
Q38447081Germline-specific H1 variants: the "sexy" linker histones
Q35749599Keeping fingers crossed: heterochromatin spreading through interdigitation of nucleosome arrays
Q90049865Linker histone variant H1t is closely associated with repressed repeat-element chromatin domains in pachytene spermatocytes
Q38587329Mesoscale simulations of two nucleosome-repeat length oligonucleosomes
Q42393679Modeling studies of chromatin fiber structure as a function of DNA linker length.
Q37398631Molecular dynamics of histone H1.
Q34213222Molecular modeling of the chromatosome particle
Q41832209Nucleosome geometry and internucleosomal interactions control the chromatin fiber conformation
Q38675151Role of H1 linker histones in mammalian development and stem cell differentiation.
Q90695157Spermatid-specific linker histone HILS1 is a poor condenser of DNA and chromatin and preferentially associates with LINE-1 elements
Q28246949The C-terminal domain is the primary determinant of histone H1 binding to chromatin in vivo
Q35246324The effect of linker histone's nucleosome binding affinity on chromatin unfolding mechanisms.

Search more.