The quest to deduce protein function from sequence: the role of pattern databases.

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The quest to deduce protein function from sequence: the role of pattern databases. is …
instance of (P31):
review articleQ7318358
scholarly articleQ13442814

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P356DOI10.1016/S1357-2725(99)00106-5
P698PubMed publication ID10687950

P50authorTerri AttwoodQ10937
P2860cites workCLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choiceQ24286950
Gapped BLAST and PSI-BLAST: a new generation of protein database search programsQ24545170
Database of protein sequence alignments: PIR-ALNQ24548403
Amino acid substitution matrices from protein blocksQ24563220
Profile analysis: detection of distantly related proteinsQ24606115
A comprehensive set of sequence analysis programs for the VAXQ26778432
The Protein Data Bank: a computer-based archival file for macromolecular structuresQ27860989
The PROSITE database, its status in 1999Q28291019
Pfam 3.1: 1313 multiple alignments and profile HMMs match the majority of proteinsQ28291030
Empirical statistical estimates for sequence similarity searches.Q30471883
Financing a future for public biological dataQ30581916
The SBASE protein domain library, release 6.0: a collection of annotated protein sequence segmentsQ31957893
The SWISS-PROT protein sequence data bank and its supplement TrEMBL in 1999.Q31958031
Nucleic acid sequence bankQ33462730
Systematic functional analysis of the yeast genomeQ34067467
Highly specific protein sequence motifs for genome analysisQ36252448
Improving the sensitivity of the sequence profile methodQ36278220
SRS: information retrieval system for molecular biology data banksQ36811792
Entrez: molecular biology database and retrieval systemQ36811801
Finding sequence motifs in groups of functionally related proteinsQ37679318
Recent improvements of the ProDom database of protein domain familiesQ38548517
PRINTS prepares for the new millennium.Q39726477
New features of the Blocks Database serversQ39726483
Pattern-induced multi-sequence alignment (PUMA) algorithm employing secondary structure-dependent gap penalties for use in comparative protein modellingQ44253383
Protein annotation: detective work for function predictionQ47945670
MIPS: a database for genomes and protein sequences.Q50888349
ProClass Protein Family Database.Q54940432
The PIR-International Protein Sequence DatabaseQ59575236
Connecting protein family resources using the proWeb networkQ71954188
BEAUTY: an enhanced BLAST-based search tool that integrates multiple biological information resources into sequence similarity search resultsQ73299735
DOMO: a new database of aligned protein domainsQ77734686
P433issue2
P304page(s)139-155
P577publication date2000-02-01
P1433published inInternational Journal of Biochemistry & Cell BiologyQ6051320
P1476titleThe quest to deduce protein function from sequence: the role of pattern databases
P478volume32

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cites work (P2860)
Q30773113A systematic approach to modeling, capturing, and disseminating proteomics experimental data
Q34569638Accurate prediction of protein enzymatic class by N-to-1 Neural Networks
Q92003793Characterization and Expression Analysis of Heme Oxygenase Genes from Sorghum bicolor
Q40512726Comparative genomics and structure prediction of dental matrix proteins
Q73062299Current awareness on comparative and functional genomics
Q35016235Gene homology resources on the World Wide Web.
Q38674610Genetic Variation and Its Reflection on Posttranslational Modifications in Frequency Clock and Mating Type a-1 Proteins in Sordaria fimicola.
Q25255861Oct-2 DNA binding transcription factor: functional consequences of phosphorylation and glycosylation
Q24815367Pattern similarity study of functional sites in protein sequences: lysozymes and cystatins
Q35034778Prediction of protein functional domains from sequences using artificial neural networks
Q89747802Similar genomic patterns of clinical infective endocarditis and oral isolates of Streptococcus sanguinis and Streptococcus gordonii
Q57387740Some operations research methods for analyzing protein sequences and structures
Q57014399Tools for Protein Technologies
Q38651320Validating annotations for uncharacterized proteins in Shewanella oneidensis
Q34069813Will genomics revolutionize antimicrobial drug discovery?

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