Identification of the first archaeal Type 1 RNase H gene from Halobacterium sp. NRC-1: archaeal RNase HI can cleave an RNA-DNA junction

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Identification of the first archaeal Type 1 RNase H gene from Halobacterium sp. NRC-1: archaeal RNase HI can cleave an RNA-DNA junction is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1042/BJ20040153
P932PMC publication ID1133889
P698PubMed publication ID15115438

P2093author name stringMasaru Tomita
Hiroshi Yanagawa
Mitsuhiro Itaya
Naoto Ohtani
P2860cites workGenome sequence of Halobacterium species NRC-1Q22066243
DNA sequence analysis: a general, simple and rapid method for sequencing large oligodeoxyribonucleotide fragments by mappingQ24602115
Structural details of ribonuclease H from Escherichia coli as refined to an atomic resolutionQ27642055
Proposal for new catalytic roles for two invariant residues in Escherichia coli ribonuclease HIQ27733938
Saccharomyces cerevisiae RNase H(35) functions in RNA primer removal during lagging-strand DNA synthesis, most efficiently in cooperation with Rad27 nucleaseQ27930354
The absence of ribonuclease H1 or H2 alters the sensitivity of Saccharomyces cerevisiae to hydroxyurea, caffeine and ethyl methanesulphonate: implications for roles of RNases H in DNA replication and repairQ27931541
Isolation of RNase H genes that are essential for growth of Bacillus subtilis 168Q30657542
Isolation and characterization of a second RNase H (RNase HII) of Escherichia coli K-12 encoded by the rnhB geneQ31022160
A Corynebacterium glutamicum rnhA recG double mutant showing lysozyme-sensitivity, temperature-sensitive growth, and UV-sensitivityQ33195475
DNA sequence of the gene coding for Escherichia coli ribonuclease HQ34254042
Overexpression of RNase H partially complements the growth defect of an Escherichia coli delta topA mutant: R-loop formation is a major problem in the absence of DNA topoisomerase IQ34451557
Identification of the genes encoding Mn2+-dependent RNase HII and Mg2+-dependent RNase HIII from Bacillus subtilis: classification of RNases H into three familiesQ34487534
Three-dimensional structure of ribonuclease H from E. coliQ34566873
Crystal structure of the ribonuclease H domain of HIV-1 reverse transcriptaseQ34577497
A common 40 amino acid motif in eukaryotic RNases H1 and caulimovirus ORF VI proteins binds to duplex RNAsQ34661604
An unusual mechanism of self-primed reverse transcription requires the RNase H domain of reverse transcriptase to cleave an RNA duplexQ36562838
Reconstitution in vitro of RNase H activity by using purified N-terminal and C-terminal domains of human immunodeficiency virus type 1 reverse transcriptaseQ37396397
Dispensability of glutamic acid 48 and aspartic acid 134 for Mn2+-dependent activity of Escherichia coli ribonuclease HI.Q38356702
The spectrophotometric determination of tyrosine and tryptophan in proteinsQ39252126
Role of cysteine residues in ribonuclease H from Escherichia coli. Site-directed mutagenesis and chemical modificationQ41978100
Archaeoglobus fulgidus RNase HII in DNA replication: enzymological functions and activity regulation via metal cofactorsQ42658112
Purification and characterization of the RNase H domain of HIV-1 reverse transcriptase expressed in recombinant Escherichia coliQ43449938
Mutating conserved residues in the ribonuclease H domain of Ty3 reverse transcriptase affects specialized cleavage eventsQ43982347
Activation/attenuation model for RNase H. A one-metal mechanism with second-metal inhibition.Q46245422
The putative substrate recognition loop of Escherichia coli ribonuclease H is not essential for activityQ46401632
Molecular diversities of RNases H.Q51336917
Far different levels of gene expression provided by an oriented cloning system inBacillus subtilisandEscherichia coliQ53864068
Kinetic analysis of Escherichia coli ribonuclease HI using oligomeric DNA/RNA substrates suggests an alternative mechanism for the interaction between the enzyme and the substrate.Q54607803
pH-dependent thermostabilization of Escherichia coli ribonuclease HI by histidine to alanine substitutions.Q54661696
Importance of the positive charge cluster in Escherichia coli ribonuclease HI for the effective binding of the substrate.Q54695492
Overproduction and preliminary crystallographic study of ribonuclease H from Escherichia coli.Q54727290
Function of RNase H in DNA replication revealed by RNase H defective mutants of Escherichia coliQ70186978
Substrate specificity of human RNase H1 and its role in excision repair of ribose residues misincorporated in DNAQ70458178
Thermal stability of Escherichia coli ribonuclease HI and its active site mutants in the presence and absence of the Mg2+ ion. Proposal of a novel catalytic role for Glu48Q71859993
A novel strategy for stabilization of Escherichia coli ribonuclease HI involving a screen for an intragenic suppressor of carboxyl-terminal deletionsQ72724809
Creation and removal of embedded ribonucleotides in chromosomal DNA during mammalian Okazaki fragment processingQ73648477
Characterization of ribonuclease HII from Escherichia coli overproduced in a soluble formQ73731965
Cooperative regulation for Okazaki fragment processing by RNase HII and FEN-1 purified from a hyperthermophilic archaeon, Pyrococcus furiosusQ73873899
Temporal coordination between initiation of HIV (+)-strand DNA synthesis and primer removalQ77298456
P433issuePt 3
P407language of work or nameEnglishQ1860
P304page(s)795-802
P577publication date2004-08-01
P1433published inBiochemical JournalQ864221
P1476titleIdentification of the first archaeal Type 1 RNase H gene from Halobacterium sp. NRC-1: archaeal RNase HI can cleave an RNA-DNA junction
P478volume381

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cites work (P2860)
Q41772246A dual role of divalent metal ions in catalysis and folding of RNase H1 from extreme halophilic archaeon Halobacterium sp. NRC-1.
Q37392491A phylogenetic view of bacterial ribonucleases
Q34387980Acquisition of an Archaea-like ribonuclease H domain by plant L1 retrotransposons supports modular evolution
Q34364175Cleavage of double-stranded RNA by RNase HI from a thermoacidophilic archaeon, Sulfolobus tokodaii 7.
Q38908130Convergence of retrotransposons in oomycetes and plants.
Q34458880Convergent evolution of ribonuclease h in LTR retrotransposons and retroviruses
Q36459488Crystallization and preliminary crystallographic analysis of type 1 RNase H from the hyperthermophilic archaeon Sulfolobus tokodaii 7.
Q35288330Divalent metal ion-induced folding mechanism of RNase H1 from extreme halophilic archaeon Halobacterium sp. NRC-1.
Q38208817Diversity of the DNA replication system in the Archaea domain
Q37848236Effect of the termini of RNase Hs from Chlamydophila pneumoniae on enzymatic biochemical characterization
Q30832990Evolution of ribonuclease H genes in prokaryotes to avoid inheritance of redundant genes
Q38853906Evolution of the archaeal and mammalian information processing systems: towards an archaeal model for human disease
Q90455698Evolutionary history and activity of RNase H1-like proteins in Arabidopsis thaliana
Q57103308Post-genomics of the model haloarchaeon Halobacterium sp. NRC-1
Q39162255Real time monitoring of junction ribonuclease activity of RNase H using chimeric molecular beacons
Q34948257Ribonuclease H: molecular diversities, substrate binding domains, and catalytic mechanism of the prokaryotic enzymes
Q26864225Ribonucleotides in bacterial DNA
Q40395197Role of RNase H1 in DNA repair: removal of single ribonucleotide misincorporated into DNA in collaboration with RNase H2.
Q41828496Structure-specific nuclease activities of Pyrococcus abyssi RNase HII.

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