Developing a genetic manipulation system for the Antarctic archaeon, Halorubrum lacusprofundi: investigating acetamidase gene function

scientific article published on 06 October 2016

Developing a genetic manipulation system for the Antarctic archaeon, Halorubrum lacusprofundi: investigating acetamidase gene function is …
instance of (P31):
scholarly articleQ13442814

External links are
P6179Dimensions Publication ID1042299864
P356DOI10.1038/SREP34639
P932PMC publication ID5052560
P698PubMed publication ID27708407

P50authorIain G DugginQ57557525
Anne PoljakQ60672465
Ricardo CavicchioliQ43205733
P2093author name stringY Liao
J C Walsh
T J Williams
M Ji
P M G Curmi
P2860cites workMICROBIOLOGY. Feeding on plasticQ87438338
Low-pass sequencing for microbial comparative genomicsQ22065317
Melamine deaminase and atrazine chlorohydrolase: 98 percent identical but functionally differentQ24548915
Regulation of nitrogen metabolism and gene expression in fungiQ24654979
Clustal W and Clustal X version 2.0Q27860517
A bacterium that degrades and assimilates poly(ethylene terephthalate)Q28005514
Homologous gene knockout in the archaeon Halobacterium salinarum with ura3 as a counterselectable markerQ28144638
The genome of Methanosarcina mazei: evidence for lateral gene transfer between bacteria and archaeaQ28215173
Sequencing of seven haloarchaeal genomes reveals patterns of genomic fluxQ28481501
FastTree 2--approximately maximum-likelihood trees for large alignmentsQ28748616
The aerobic pseudomonads: a taxonomic studyQ29615280
Methanogenic archaea: ecologically relevant differences in energy conservationQ29617218
Modestobacter multiseptatus gen. nov., sp. nov., a budding actinomycete from soils of the Asgard Range (Transantarctic Mountains).Q30596737
Proposal for the reclassification of Thiobacillus novellus as Starkeya novella gen. nov., comb. nov., in the alpha-subclass of the ProteobacteriaQ30617245
CetZ tubulin-like proteins control archaeal cell shapeQ30630847
Pseudonocardia dioxanivorans sp. nov., a novel actinomycete that grows on 1,4-dioxane.Q30985078
Microbial ecology of Antarctic aquatic systemsQ31004412
Cold-adapted archaeaQ33244208
Ammonia-oxidizing archaea use the most energy-efficient aerobic pathway for CO2 fixationQ33730666
Transformation of Halobacterium halobium: development of vectors and investigation of gas vesicle synthesisQ33772203
Genome analysis suggests that the soil oligotrophic bacterium Agromonas oligotrophica (Bradyrhizobium oligotrophicum) is a nitrogen-fixing symbiont of Aeschynomene indicaQ34035507
Archaea--timeline of the third domainQ34153417
Measurement of in situ activities of nonphotosynthetic microorganisms in aquatic and terrestrial habitatsQ34194521
Amino acid substitutions in cold-adapted proteins from Halorubrum lacusprofundi, an extremely halophilic microbe from antarcticaQ34335706
Characterization of pHV2 from Halobacterium volcanii and its use in demonstrating transformation of an archaebacteriumQ34372391
Development of a gene knockout system for the halophilic archaeon Haloferax volcanii by use of the pyrE geneQ34513433
Cloning, overexpression, purification, and characterization of a polyextremophilic β-galactosidase from the Antarctic haloarchaeon Halorubrum lacusprofundiQ34548717
Microbial ecology of an Antarctic hypersaline lake: genomic assessment of ecophysiology among dominant haloarchaeaQ35098368
Complete Genome Sequence of the Opitutaceae Bacterium Strain TAV5, a Potential Facultative Methylotroph of the Wood-Feeding Termite Reticulitermes flavipesQ35173235
Recombinant protein production in Antarctic Gram-negative bacteriaQ35843078
Structure and function of cold shock proteins in archaea.Q35949283
Antarctic archaea-virus interactions: metaproteome-led analysis of invasion, evasion and adaptationQ35972472
Construction and use of halobacterial shuttle vectors and further studies on Haloferax DNA gyraseQ36147119
A plasmid vector with a selectable marker for halophilic archaebacteriaQ36157975
Environmental fate processes and biochemical transformations of chiral emerging organic pollutantsQ36484608
Characterization of a temperature-responsive two component regulatory system from the Antarctic archaeon, Methanococcoides burtoniiQ36773995
Ecophysiological Distinctions of Haloarchaea from a Hypersaline Antarctic Lake as Determined by MetaproteomicsQ37122326
High level of intergenera gene exchange shapes the evolution of haloarchaea in an isolated Antarctic lakeQ37240522
Development of a genetic system for the deep-sea psychrophilic bacterium Pseudoalteromonas sp. SM9913.Q37596075
Model organisms for genetics in the domain Archaea: methanogens, halophiles, Thermococcales and SulfolobalesQ37832278
CRISPR loci reveal networks of gene exchange in archaeaQ37970501
Use of GFP-GvpE fusions to quantify the GvpD-mediated reduction of the transcriptional activator GvpE in haloarchaea.Q50481763
Butyramide-utilizing mutants of Pseudomonas aeruginosa 8602 which produce an amidase with altered substrate specificity.Q53689851
Nonfermentative gram-negative bacteria encountered in clinical specimensQ54716867
Acetic AcidQ56443117
A novel strategy for the construction of genomic mutants of the Antarctic bacterium Pseudoalteromonas haloplanktis TAC125Q56927769
Glucose fluxes and concentrations of dissolved combined neutral sugars (polysaccharides) in the Ross Sea and Polar Front Zone, AntarcticaQ57241164
A global inventory of small floating plastic debrisQ57277683
Terrestrial models for extraterrestrial life: methanogens and halophiles at Martian temperaturesQ58332208
Halobacterium lacusprofundi sp. nov., a Halophilic Bacterium Isolated from Deep Lake, AntarcticaQ58425343
Detection of acetamide in the thermal degradation products of chitin (author's transl)Q66951425
Metabolic Studies of Ornidazole in the Rat, in the Dog and in ManQ66983491
Metabolites from the reduction of metronidazole by xanthine oxidaseQ71849997
The Aliphatic Acylamide Amidohydrolase of Mycobacterium smegmatis: Its Inducible Nature and Relation to Acyl-Transfer to HydroxylamineQ72233167
Unsaturated diether lipids in the psychrotrophic archaeon Halorubrum lacusprofundiQ81398334
Biofilm formation by haloarchaeaQ87430828
Archaeal biofilms: widespread and complexQ38077258
CRISPR-mediated adaptive immune systems in bacteria and archaeaQ38089802
Improved strains and plasmid vectors for conditional overexpression of His-tagged proteins in Haloferax volcaniiQ39606788
Subunit topology of two 20S proteasomes from Haloferax volcaniiQ39702656
Acetamide agar for differentiation of nonfermentative bacteriaQ39861552
Degradation of 1,4-dioxane by an actinomycete in pure culture.Q39916974
Ecology of Indigenous Soil Rhizobia: Response of Bradyrhizobium japonicum to Readily Available Substrates.Q39925712
Mutations in DNA gyrase result in novobiocin resistance in halophilic archaebacteriaQ39938412
Acetamide—a metabolite of metronidazole formed by the intestinal floraQ40288466
Development of additional selectable markers for the halophilic archaeon Haloferax volcanii based on the leuB and trpA genesQ40604361
Analysis of proteasome-dependent proteolysis in Haloferax volcanii cells, using short-lived green fluorescent proteinsQ40622148
Arsenic resistance in Halobacterium sp. strain NRC-1 examined by using an improved gene knockout system.Q40816248
Modularized evolution in archaeal methanogens phylogenetic forestQ41758840
Importance of trmE for growth of the psychrophile Pseudomonas syringae at low temperaturesQ41812775
Essential requirements for the detection and degradation of invaders by the Haloferax volcanii CRISPR/Cas system I-B.Q41863092
Cloning, expression, and purification of functional Sec11a and Sec11b, type I signal peptidases of the archaeon Haloferax volcanii.Q41976175
SINA: accurate high-throughput multiple sequence alignment of ribosomal RNA genes.Q42160739
Mevinolin-resistant mutations identify a promoter and the gene for a eukaryote-like 3-hydroxy-3-methylglutaryl-coenzyme A reductase in the archaebacterium Haloferax volcanii.Q42609740
Molecular characterisation of formamidase from Methylophilus methylotrophusQ42640313
Metabolic adaptation and trophic strategies of soil bacteria-C1- metabolism and sulfur chemolithotrophy in Starkeya novellaQ42680587
Horizontal gene transfer and genome evolution in Methanosarcina.Q42728004
The immune system of halophilic archaea.Q43017770
Transformation methods for halophilic archaebacteriaQ43018042
Characterization of a cryptic plasmid from a Greenland ice core Arthrobacter isolate and construction of a shuttle vector that replicates in psychrophilic high G+C Gram-positive recipientsQ43024256
Development and use of genetic system to identify genes required for efficient low-temperature growth of Psychrobacter arcticus 273-4.Q43025382
Functional expression of green fluorescent protein derivatives in Halobacterium salinarumQ43025979
The gene for a halophilic beta-galactosidase (bgaH) of Haloferax alicantei as a reporter gene for promoter analyses in Halobacterium salinarum.Q43027424
Post-translational secretion of fusion proteins in the halophilic archaea Haloferax volcanii.Q43032359
Transformation of plasmid DNA into E. coli using the heat shock methodQ43043819
Triacetonamine formation in a bio-oil from fast pyrolysis of sewage sludge using acetone as the absorption solventQ43170797
Policy: Classify plastic waste as hazardousQ43354853
brp and blh are required for synthesis of the retinal cofactor of bacteriorhodopsin in Halobacterium salinarumQ43510596
A new simvastatin (mevinolin)-resistance marker from Haloarcula hispanica and a new Haloferax volcanii strain cured of plasmid pHV2.Q43562824
The AmiE aliphatic amidase and AmiF formamidase of Helicobacter pylori: natural evolution of two enzyme paraloguesQ43612698
Biodegradation of N,N-dimethylacetamide by Rhodococcus sp. strain B83 isolated from the rhizosphere of pagoda treeQ46390791
Gas chromatographic-mass spectrometric analysis of acrylamide and acetamide in cigarette mainstream smoke after on-column injectionQ46418297
Oceans. Microplastics in the seasQ46867968
Theoretical investigation into competing unimolecular reactions encountered in the pyrolysis of acetamide.Q48033887
P275copyright licenseCreative Commons Attribution 4.0 InternationalQ20007257
P6216copyright statuscopyrightedQ50423863
P407language of work or nameEnglishQ1860
P304page(s)34639
P577publication date2016-10-06
P1433published inScientific ReportsQ2261792
P1476titleDeveloping a genetic manipulation system for the Antarctic archaeon, Halorubrum lacusprofundi: investigating acetamidase gene function
P478volume6

Reverse relations

cites work (P2860)
Q38952183Cold adaptation of the Antarctic haloarchaea Halohasta litchfieldiae and Halorubrum lacusprofundi
Q55493602Genomic variation and biogeography of Antarctic haloarchaea.
Q37428020Morphological and proteomic analysis of biofilms from the Antarctic archaeon, Halorubrum lacusprofundi
Q93115551Unexpected host dependency of Antarctic Nanohaloarchaeota

Search more.