Global analysis of mRNA decay in Halobacterium salinarum NRC-1 at single-gene resolution using DNA microarrays.

scientific article published on 20 July 2007

Global analysis of mRNA decay in Halobacterium salinarum NRC-1 at single-gene resolution using DNA microarrays. is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1128/JB.00559-07
P932PMC publication ID2045193
P698PubMed publication ID17644597
P5875ResearchGate publication ID6193242

P50authorGabriele KlugQ41509368
Jörg SoppaQ42393991
P2093author name stringChristian Lange
Alexander Zaigler
Sonja Hundt
P2860cites workGenome sequence of Halobacterium species NRC-1Q22066243
The complete genome sequence of the gram-positive bacterium Bacillus subtilisQ22122360
An exosome-like complex in Sulfolobus solfataricusQ24536058
Polyadenylated RNA isolated from the archaebacterium Halobacterium halobiumQ39965596
RNA-protein interactions of an archaeal homotetrameric splicing endoribonuclease with an exceptional evolutionary historyQ41007370
Global analysis of mRNA stability in the archaeon SulfolobusQ41838953
Substrate requirements for a novel archaeal endonuclease that cleaves within the 5' external transcribed spacer of Sulfolobus acidocaldarius precursor rRNAQ41840273
Protein complexes in the archaeon Methanothermobacter thermautotrophicus analyzed by blue native/SDS-PAGE and mass spectrometryQ43017873
A Streptomyces coelicolor functional orthologue of Escherichia coli RNase E shows shuffling of catalytic and PNPase-binding domainsQ44390464
Exoribonuclease R interacts with endoribonuclease E and an RNA helicase in the psychrotrophic bacterium Pseudomonas syringae Lz4W.Q45261043
Copurification of E. coli RNAase E and PNPase: evidence for a specific association between two enzymes important in RNA processing and degradation.Q54637941
Genome-wide survey of mRNA half-lives in Bacillus subtilis identifies extremely stable mRNAsQ73714744
Is gene expression in Halobacterium NRC-1 regulated by multiple TBP and TFB transcription factors?Q73874047
Structural framework for the mechanism of archaeal exosomes in RNA processingQ81476134
The Pyrococcus exosome complex: structural and functional characterizationQ82238390
RNA polyadenylation in Archaea: not observed in Haloferax while the exosome polynucleotidylates RNA in SulfolobusQ24539131
Characterizing the effect of the Staphylococcus aureus virulence factor regulator, SarA, on log-phase mRNA half-livesQ24542439
The yeast exosome and human PM-Scl are related complexes of 3' --> 5' exonucleasesQ24600315
Prediction of the archaeal exosome and its connections with the proteasome and the translation and transcription machineries by a comparative-genomic approachQ24621595
RNase P RNAs from some Archaea are catalytically activeQ24645311
RNA polyadenylation and degradation in different Archaea; roles of the exosome and RNase RQ24674158
Crystal structure and evolution of a transfer RNA splicing enzymeQ27749038
A new mathematical model for relative quantification in real-time RT-PCRQ27860781
The exosome: a conserved eukaryotic RNA processing complex containing multiple 3'-->5' exoribonucleasesQ27930922
The archaeal exosome core is a hexameric ring structure with three catalytic subunitsQ28256090
Characterization of native and reconstituted exosome complexes from the hyperthermophilic archaeon Sulfolobus solfataricusQ28271596
Differential mRNA stability controls relative gene expression within a polycistronic operonQ28306695
mRNA stability in mammalian cellsQ29616374
Precision and functional specificity in mRNA decayQ29618689
Degradation of mRNA in eukaryotesQ29622939
Construction and usage of a onefold-coverage shotgun DNA microarray to characterize the metabolism of the archaeon Haloferax volcanii.Q30932558
Transcriptome changes and cAMP oscillations in an archaeal cell cycleQ33287341
mRNA degradation in bacteriaQ33660995
Degradation of mRNA in bacteria: emergence of ubiquitous featuresQ33843441
Global analysis of mRNA decay and abundance in Escherichia coli at single-gene resolution using two-color fluorescent DNA microarraysQ34075213
Understanding the adaptation of Halobacterium species NRC-1 to its extreme environment through computational analysis of its genome sequenceQ34094195
The role of RNA stability during bacterial stress responses and starvation.Q34172412
An Archaeal Chromosomal Autonomously Replicating Sequence Element from an Extreme Halophile,Halobacteriumsp. Strain NRC-1Q34267329
mRNA decay in Escherichia coli comes of age.Q34317343
Stability of mRNA in the hyperthermophilic archaeon Sulfolobus solfataricusQ34364704
Demonstration of an unstable RNA and of a precursor to ribosomal RNA in HeLa cellsQ34384557
Genomic and cDNA sequence tags of the hyperthermophilic archaeon Pyrobaculum aerophilum.Q34618413
RNA processing and degradation in Bacillus subtilisQ35026024
The rightward gas vesicle operon in Halobacterium plasmid pNRC100: identification of the gvpA and gvpC gene products by use of antibody probes and genetic analysis of the region downstream of gvpC.Q35966873
Polyadenylated, noncapped RNA from the archaebacterium Methanococcus vannieliiQ36305290
The nature of actinomycin D binding to d(AACCAXYG) sequence motifsQ37068344
Global RNA half-life analysis in Escherichia coli reveals positional patterns of transcript degradationQ38358024
An mRNA degrading complex in Rhodobacter capsulatus.Q39489189
Genome-wide analysis of mRNA decay in resting and activated primary human T lymphocytesQ39696497
Individual gvp transcript segments in Haloferax mediterranei exhibit varying half-lives, which are differentially affected by salt concentration and growth phaseQ39696585
P4510describes a project that usesDNA microarrayQ591745
P433issue19
P921main subjectHalobacterium salinarumQ3782756
P304page(s)6936-6944
P577publication date2007-07-20
P1433published inJournal of BacteriologyQ478419
P1476titleGlobal analysis of mRNA decay in Halobacterium salinarum NRC-1 at single-gene resolution using DNA microarrays
P478volume189

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cites work (P2860)
Q42906742A comprehensive analysis of the importance of translation initiation factors for Haloferax volcanii applying deletion and conditional depletion mutants
Q37002224Alternative Translation Initiation of a Haloarchaeal Serine Protease Transcript Containing Two In-Frame Start Codons
Q48539792Case study: Using microbe molecular biology for Gulf oil spill clean up.
Q35659785Development of New Modular Genetic Tools for Engineering the Halophilic Archaeon Halobacterium salinarum
Q28595650Genome-wide gene expression and RNA half-life measurements allow predictions of regulation and metabolic behavior in Methanosarcina acetivorans
Q35575315Genome-wide investigation of mRNA lifetime determinants in Escherichia coli cells cultured at different growth rates.
Q53749363Genomic analysis of mRNA decay in E. coli with DNA microarrays.
Q36668941Global analysis of mRNA stability in Mycobacterium tuberculosis
Q42326267Global mRNA decay analysis at single nucleotide resolution reveals segmental and positional degradation patterns in a Gram-positive bacterium
Q43026167In vivo and in vitro studies of RNA degrading activities in Archaea
Q37253183Measurements of mRNA degradation in Borrelia burgdorferi
Q37224759Protein-DNA binding dynamics predict transcriptional response to nutrients in archaea
Q37392514RNA degradation in Archaea and Gram-negative bacteria different from Escherichia coli
Q98158311Selective Translation of Low Abundance and Upregulated Transcripts in Halobacterium salinarum
Q41946226Short RNA half-lives in the slow-growing marine cyanobacterium Prochlorococcus.