Comparative genomics study of polyhydroxyalkanoates (PHA) and ectoine relevant genes from Halomonas sp. TD01 revealed extensive horizontal gene transfer events and co-evolutionary relationships

scientific article (publication date: November 2011)

Comparative genomics study of polyhydroxyalkanoates (PHA) and ectoine relevant genes from Halomonas sp. TD01 revealed extensive horizontal gene transfer events and co-evolutionary relationships is …
instance of (P31):
scholarly articleQ13442814

External links are
P6179Dimensions Publication ID1047971267
P356DOI10.1186/1475-2859-10-88
P3181OpenCitations bibliographic resource ID3637811
P932PMC publication ID3227634
P698PubMed publication ID22040376
P5875ResearchGate publication ID51757757

P2093author name stringLei Cai
Dan Tan
Guo-Qiang Chen
Wei-Dong Tian
Jin-Chun Chen
Xin-Ran Dong
Gulsimay Aibaidula
P2860cites workOn the origin of prokaryotic "species": the taxonomy of halophilic ArchaeaQ21203694
The COG database: an updated version includes eukaryotesQ21284294
Low-pass sequencing for microbial comparative genomicsQ22065317
The tRNAscan-SE, snoscan and snoGPS web servers for the detection of tRNAs and snoRNAsQ24530279
Gapped BLAST and PSI-BLAST: a new generation of protein database search programsQ24545170
KEGG: Kyoto Encyclopedia of Genes and GenomesQ24548371
Rfam: Wikipedia, clans and the "decimal" releaseQ24612354
Database resources of the National Center for Biotechnology InformationQ24644775
Identifying bacterial genes and endosymbiont DNA with GlimmerQ24653724
Multiple sequence alignment with the Clustal series of programsQ24672842
RNAmmer: consistent and rapid annotation of ribosomal RNA genesQ24675768
Organic compatible solutes of halotolerant and halophilic microorganismsQ24815605
Improved prediction of signal peptides: SignalP 3.0Q27860548
The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003Q27860747
MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony MethodsQ27860929
Characterization of the osmoprotectant transporter OpuC from Pseudomonas syringae and demonstration that cystathionine-beta-synthase domains are required for its osmoregulatory functionQ28492520
COBALT: constraint-based alignment tool for multiple protein sequencesQ30014837
Re-evaluation of the primary structure of Ralstonia eutropha phasin and implications for polyhydroxyalkanoic acid granule binding.Q30675663
Ralstonia eutropha H16 encodes two and possibly three intracellular Poly[D-(-)-3-hydroxybutyrate] depolymerase genesQ31147026
Using RepeatMasker to identify repetitive elements in genomic sequencesQ33416513
Production and characterization of a biodegradable poly (hydroxybutyrate-co-hydroxyvalerate) (PHB-co-PHV) copolymer by moderately haloalkalitolerant Halomonas campisalis MCM B-1027 isolated from Lonar Lake, IndiaQ33659780
TRAP transporters: an ancient family of extracytoplasmic solute-receptor-dependent secondary active transportersQ33885959
Understanding the adaptation of Halobacterium species NRC-1 to its extreme environment through computational analysis of its genome sequenceQ34094195
Wide Distribution among Halophilic Archaea of a Novel Polyhydroxyalkanoate Synthase Subtype with Homology to Bacterial Type III SynthasesQ34334715
Polyester synthases: natural catalysts for plasticsQ35211113
Analysis of a 24-kilodalton protein associated with the polyhydroxyalkanoic acid granules in Alcaligenes eutrophusQ35584429
Poly(3-hydroxybutyrate) granule-associated proteins: impacts on poly(3-hydroxybutyrate) synthesis and degradationQ36068666
Molecular characterization of the phaECHm genes, required for biosynthesis of poly(3-hydroxybutyrate) in the extremely halophilic archaeon Haloarcula marismortuiQ36137114
Genetic and biochemical characterization of the poly(3-hydroxybutyrate-co-3-hydroxyvalerate) synthase in Haloferax mediterraneiQ36747240
Osmoadaptation among Vibrio species and unique genomic features and physiological responses of Vibrio parahaemolyticus.Q37191136
The UniProtKB/Swiss-Prot knowledgebase and its plant proteome annotation programQ37209770
A microbial polyhydroxyalkanoates (PHA) based bio- and materials industryQ37558302
Synthesis and production of polyhydroxyalkanoates by halophiles: current potential and future prospectsQ37660146
A blueprint of ectoine metabolism from the genome of the industrial producer Halomonas elongata DSM 2581 T.Q38635649
Enhanced production of medium-chain-length polyhydroxyalkanoates (PHA) by PHA depolymerase knockout mutant of Pseudomonas putida KT2442.Q39310128
Corynebacterium glutamicum is equipped with four secondary carriers for compatible solutes: identification, sequencing, and characterization of the proline/ectoine uptake system, ProP, and the ectoine/proline/glycine betaine carrier, EctP.Q39568600
Molecular analysis of the Alcaligenes eutrophus poly(3-hydroxybutyrate) biosynthetic operon: identification of the N terminus of poly(3-hydroxybutyrate) synthase and identification of the promoterQ39938764
Microbial life at high salt concentrations: phylogenetic and metabolic diversityQ41960176
Production of poly(3-hydroxybutyrate-co-3-hydroxyhexanoate) from plant oil by engineered Ralstonia eutropha strains.Q42120425
Moderately halophilic, alkalitolerant Halomonas campisalis MCM B-365 from Lonar Lake, IndiaQ43022712
Stability against denaturation mechanisms in halophilic malate dehydrogenase "adapt" to solvent conditions.Q43022898
Biochemical and enzymological properties of the polyhydroxybutyrate synthase from the extremely halophilic archaeon strain 56.Q43030857
Unsterile and continuous production of polyhydroxybutyrate by Halomonas TD01.Q43031706
Calorimetrically obtained information about the efficiency of ectoine synthesis from glucose in Halomonas elongataQ43649001
Application of a time-delay neural network to promoter annotation in the Drosophila melanogaster genomeQ46052672
Improved prediction of bacterial transcription start sites.Q50736947
Mechanistic studies on class I polyhydroxybutyrate (PHB) synthase from Ralstonia eutropha: class I and III synthases share a similar catalytic mechanism.Q52068712
In silico genome-scale metabolic analysis of Pseudomonas putida KT2440 for polyhydroxyalkanoate synthesis, degradation of aromatics and anaerobic survival.Q53468364
Molecular characterization of the poly(3-hydroxybutyrate) (PHB) synthase from Ralstonia eutropha: in vitro evolution, site-specific mutagenesis and development of a PHB synthase protein modelQ56900938
Compatible solutes as protectants for zymogens against proteolysisQ79781646
Characterisation of copolymer, poly (hydroxybutyrate-co-hydroxyvalerate) (PHB-co-PHV) produced by Halomonas campisalis (MCM B-1027), its biodegradability and potential applicationQ83827116
P433issue1
P407language of work or nameEnglishQ1860
P921main subjectbiotechnologyQ7108
horizontal gene transferQ83185
co-evolutionQ208841
polyhydroxyalkanoateQ425079
microbiologyQ7193
comparative genomicsQ1147112
P304page(s)88
P577publication date2011-11-01
P1433published inMicrobial Cell FactoriesQ15766995
P1476titleComparative genomics study of polyhydroxyalkanoates (PHA) and ectoine relevant genes from Halomonas sp. TD01 revealed extensive horizontal gene transfer events and co-evolutionary relationships
P478volume10

Reverse relations

cites work (P2860)
Q57816801A Multiplex Genome Editing Method for Based on CRISPR-Cas12a
Q35843041A nanomolecular approach to decrease adhesion of biofouling-producing bacteria to graphene-coated material.
Q92634829Chromosome engineering of the TCA cycle in Halomonas bluephagenesis for production of copolymers of 3-hydroxybutyrate and 3-hydroxyvalerate (PHBV)
Q37240171Complete genome sequence of Halomonas sp. R5-57.
Q91704482Current developments on polyhydroxyalkanoates synthesis by using halophiles as a promising cell factory
Q64390377Development of Halomonas TD01 as a host for open production of chemicals
Q53488690Development of an enhanced chromosomal expression system based on porin synthesis operon for halophile Halomonas sp.
Q60921818Draft Genome Sequence of sp. Strain SL1, a Putative Polyhydroxyalkanoate-Producing Halophile
Q28731353Draft genome of halomonas species strain GFAJ-1 (ATCC BAA-2256)
Q35943197Draft genome sequence of Halomonas sp. strain KM-1, a moderately halophilic bacterium that produces the bioplastic poly(3-hydroxybutyrate).
Q53020475Engineering Halomonas TD01 for the low-cost production of polyhydroxyalkanoates.
Q37739408Engineering Halomonas species TD01 for enhanced polyhydroxyalkanoates synthesis via CRISPRi
Q51124036Engineering Halomonas spp. as A Low-Cost Production Host for Production of Bio-surfactant Protein PhaP.
Q35762338Engineering of core promoter regions enables the construction of constitutive and inducible promoters in Halomonas sp.
Q36062272Evolutionary patterns of carbohydrate transport and metabolism in Halomonas boliviensis as derived from its genome sequence: influences on polyester production.
Q37226031Genome Sequence of Halomonas sp. Strain A3H3, Isolated from Arsenic-Rich Marine Sediments
Q90359133Genome analysis provides insights into crude oil degradation and biosurfactant production by extremely halotolerant Halomonas desertis G11 isolated from Chott El-Djerid salt-lake in Tunisian desert
Q42583944Genome of halomonas strain GFAJ-1, a blueprint for fame or business as usual.
Q38877148Halophiles: biology, adaptation, and their role in decontamination of hypersaline environments
Q36480531Hyperproduction of poly(4-hydroxybutyrate) from glucose by recombinant Escherichia coli
Q40663416Polymerase chain reaction-based screening method applicable universally to environmental haloarchaea and halobacteria for identifying polyhydroxyalkanoate producers among them
Q35908721Production of poly(3-hydroxybutyrate) by Halomonas boliviensis in an air-lift reactor
Q97069651Rational flux-tuning of Halomonas bluephagenesis for co-production of bioplastic PHB and ectoine
Q90246549Recycling and metabolic flexibility dictate life in the lower oceanic crust
Q41674655Regulation of Polyhydroxybutyrate Accumulation in Sinorhizobium meliloti by the Trans-Encoded Small RNA MmgR.
Q89283819Reprogramming Halomonas for industrial production of chemicals
Q36305682Response of Bacterial Communities to Different Detritus Compositions in Arctic Deep-Sea Sediments
Q26770533Systems Biology of Microbial Exopolysaccharides Production

Search more.