The structural basis for the oriented assembly of a TBP/TFB/promoter complex

scientific article

The structural basis for the oriented assembly of a TBP/TFB/promoter complex is …
instance of (P31):
scholarly articleQ13442814

External links are
P819ADS bibcode1999PNAS...9613668L
P356DOI10.1073/PNAS.96.24.13668
P932PMC publication ID24122
P698PubMed publication ID10570130
P5875ResearchGate publication ID12731370

P2093author name stringP B Sigler
O Littlefield
Y Korkhin
P2860cites workCLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choiceQ24286950
Factor requirements for transcription in the Archaeon Sulfolobus shibataeQ24532204
New core promoter element in RNA polymerase II-dependent transcription: sequence-specific DNA binding by transcription factor IIBQ24609068
Improved methods for building protein models in electron density maps and the location of errors in these modelsQ26776980
Crystallography & NMR System: A New Software Suite for Macromolecular Structure DeterminationQ26778405
MOLSCRIPT: a program to produce both detailed and schematic plots of protein structuresQ26778412
Processing of X-ray diffraction data collected in oscillation modeQ26778468
Refined 1.8 A crystal structure of the lambda repressor-operator complexQ27642126
The phage 434 Cro/OR1 complex at 2.5 A resolutionQ27660466
Recognition of a DNA operator by the repressor of phage 434: a view at high resolutionQ27728537
Crystal structure of trp repressor/operator complex at atomic resolutionQ27728594
Crystal structure of a TFIIB-TBP-TATA-element ternary complexQ27729899
Crystal structure of a yeast TBP/TATA-box complexQ27732067
Co-crystal structure of TBP recognizing the minor groove of a TATA elementQ27732068
A new pattern for helix-turn-helix recognition revealed by the PU.1 ETS-domain-DNA complexQ27732614
Crystal structure of a yeast TFIIA/TBP/DNA complexQ27732643
Crystal structure of a human TATA box-binding protein/TATA element complexQ27732747
The crystal structure of a hyperthermophilic archaeal TATA-box binding proteinQ27734618
The 2.1-A crystal structure of an archaeal preinitiation complex: TATA-box-binding protein/transcription factor (II)B core/TATA-boxQ27738757
Crystal structure of lambda-Cro bound to a consensus operator at 3.0 A resolutionQ27759829
Raster3D Version 2.0. A program for photorealistic molecular graphicsQ27860485
An extensively modified version of MolScript that includes greatly enhanced coloring capabilitiesQ27860594
The CCP4 suite: programs for protein crystallographyQ27861090
The molecular surface packageQ29039306
The role of general initiation factors in transcription by RNA polymerase IIQ29616442
The RNA polymerase II holoenzyme and its implications for gene regulationQ29622942
Transcription in ArchaeaQ33671277
Polarity of transcription on Pol II and archaeal promoters: where is the "one-way sign" and how is it read?Q33671285
Bidirectional binding of the TATA box binding protein to the TATA boxQ33707223
Transcription: new insights from studies on Archaea.Q34289031
Upstream box/TATA box order is the major determinant of the direction of transcriptionQ35800084
Orientation of the transcription preinitiation complex in archaeaQ36698728
Sequence-specific DNA binding by the S. shibatae TFIIB homolog, TFB, and its effect on promoter strengthQ38335620
Analysis of transcription in the archaebacterium Sulfolobus indicates that archaebacterial promoters are homologous to eukaryotic pol II promotersQ40536345
An inverted TATA box directs downstream transcription of the bone sialoprotein geneQ42821723
Two transcription factors related with the eucaryal transcription factors TATA-binding protein and transcription factor IIB direct promoter recognition by an archaeal RNA polymerase.Q54576699
Crystal structure of the yeast TFIIA/TBP/DNA complexQ71075240
P433issue24
P407language of work or nameEnglishQ1860
P304page(s)13668-73
P577publication date1999-11-23
P1433published inProceedings of the National Academy of Sciences of the United States of AmericaQ1146531
P1476titleThe structural basis for the oriented assembly of a TBP/TFB/promoter complex
P478volume96

Reverse relations

cites work (P2860)
Q34488540A Monte Carlo-based framework enhances the discovery and interpretation of regulatory sequence motifs
Q39530565A Pyrococcus homolog of the leucine-responsive regulatory protein, LrpA, inhibits transcription by abrogating RNA polymerase recruitment
Q34443389A TATA binding protein mutant with increased affinity for DNA directs transcription from a reversed TATA sequence in vivo
Q36097406A common site on TBP for transcription by RNA polymerases II and III
Q34460417A core promoter element downstream of the TATA box that is recognized by TFIIB.
Q34461659A divergent transcription factor TFIIB in trypanosomes is required for RNA polymerase II-dependent spliced leader RNA transcription and cell viability
Q34566255A novel archaeal regulatory protein, Sta1, activates transcription from viral promoters
Q34058424A structural-alphabet-based strategy for finding structural motifs across protein families.
Q37014709A whole-genome approach to identifying protein binding sites: promoters in Methanocaldococcus (Methanococcus) jannaschii
Q33942566ATG deserts define a novel core promoter subclass
Q38326186Activation of archaeal transcription mediated by recruitment of transcription factor B.
Q40424598Activator-mediated disruption of sequence-specific DNA contacts by the general transcription factor TFIIB.
Q42492961An Lrp-like transcriptional regulator from the archaeon Pyrococcus furiosus is negatively autoregulated
Q34098701An expanding family of archaeal transcriptional activators
Q27642106An extended winged helix domain in general transcription factor E/IIE alpha
Q37830691Archaeal RNA polymerase and transcription regulation.
Q36139379Archaeal transcription and its regulators
Q41911712Archaeal transcription: function of an alternative transcription factor B from Pyrococcus furiosus
Q40082603Architecture of an RNA polymerase II transcription pre-initiation complex
Q79137251Binding of TFIIB to RNA polymerase II: Mapping the binding site for the TFIIB zinc ribbon domain within the preinitiation complex
Q38645594Bypassing the Need for the Transcriptional Activator EarA through a Spontaneous Deletion in the BRE Portion of the fla Operon Promoter in Methanococcus maripaludis
Q42182757Characterization of the transcriptional activity of the cryptic plasmid pRN1 from Sulfolobus islandicus REN1H1 and regulation of its replication operon
Q54293750Complete architecture of the archaeal RNA polymerase open complex from single-molecule FRET and NPS.
Q39675486Core promoter-dependent TFIIB conformation and a role for TFIIB conformation in transcription start site selection
Q43021127Different roles of two transcription factor B proteins in the hyperthermophilic archaeon Thermococcus kodakarensis
Q58794599Displacement of the transcription factor B reader domain during transcription initiation
Q64448565Effect of UV irradiation on Sulfolobus acidocaldarius and involvement of the general transcription factor TFB3 in the early UV response
Q33698578Eukaryotic and archaeal TBP and TFB/TF(II)B follow different promoter DNA bending pathways
Q24548911Events during initiation of archaeal transcription: open complex formation and DNA-protein interactions
Q21145826Evolution of complex RNA polymerases: the complete archaeal RNA polymerase structure
Q38442397Fluorescently labeled recombinant RNAP system to probe archaeal transcription initiation.
Q28511553Fundamental cellular processes do not require vertebrate-specific sequences within the TATA-binding protein
Q33300157Genetic and transcriptomic analysis of transcription factor genes in the model halophilic Archaeon: coordinate action of TbpD and TfbA
Q38968336Global transcriptional regulator TrmB family members in prokaryotes
Q33931101Identification of CRISPR and riboswitch related RNAs among novel noncoding RNAs of the euryarchaeon Pyrococcus abyssi.
Q42511614Identification of a conserved archaeal RNA polymerase subunit contacted by the basal transcription factor TFB.
Q22065317Low-pass sequencing for microbial comparative genomics
Q42709193Macromolecular complexes in crystals and solutions
Q34205041Mechanism and regulation of transcription in archaea
Q38077256Modern biophysical approaches probe transcription-factor-induced DNA bending and looping
Q35830623Molecular Cloning of a cDNA Encoding for Taenia solium TATA-Box Binding Protein 1 (TsTBP1) and Study of Its Interactions with the TATA-Box of Actin 5 and Typical 2-Cys Peroxiredoxin Genes.
Q94671419Molecular determinants underlying functional innovations of TBP and their impact on transcription initiation
Q36698728Orientation of the transcription preinitiation complex in archaea
Q42200894Overlapping activator sequences determined for two oppositely oriented promoters in halophilic Archaea
Q34505487Phylogenetically driven sequencing of extremely halophilic archaea reveals strategies for static and dynamic osmo-response
Q52335725Precision and accuracy in smFRET based structural studies-A benchmark study of the Fast-Nano-Positioning System.
Q37079815Programmable plasmid interference by the CRISPR-Cas system in Thermococcus kodakarensis
Q45995106Promoter architecture and response to a positive regulator of archaeal transcription.
Q37235338Protein-coding gene promoters in Methanocaldococcus (Methanococcus) jannaschii.
Q38045685RNA polymerase II transcription: structure and mechanism
Q34177862Regulation of autotrophic CO2 fixation in the archaeon Thermoproteus neutrophilus.
Q39109875Regulation of mercury resistance in the crenarchaeote Sulfolobus solfataricus
Q34048446Regulation of tryptophan operon expression in the archaeon Methanothermobacter thermautotrophicus
Q37240070Removing the vertebrate-specific TBP N terminus disrupts placental beta2m-dependent interactions with the maternal immune system
Q36678130Salt-mediated electrostatics in the association of TATA binding proteins to DNA: a combined molecular mechanics/Poisson-Boltzmann study
Q33434867Small local variations in B-form DNA lead to a large variety of global geometries which can accommodate most DNA-binding protein motifs
Q33912910Snapshots of RNA polymerase II transcription initiation
Q38360498Structural basis of transcription initiation by RNA polymerase II.
Q27643138Structural basis of transcription: an RNA polymerase II-TFIIB cocrystal at 4.5 Angstroms
Q90791851Structural visualization of RNA polymerase III transcription machineries
Q51107154Structure and Function of RNA Polymerases and the Transcription Machineries.
Q35669878Structure and function of RNA polymerase II.
Q35758805Structure and mechanism of the RNA polymerase II transcription machinery
Q27656951Structure of the C-terminal domain of transcription factor IIB from Trypanosoma brucei
Q39142385Structures of replication initiation proteins from staphylococcal antibiotic resistance plasmids reveal protein asymmetry and flexibility are necessary for replication.
Q37663656Super-resolution microscopy reveals decondensed chromatin structure at transcription sites
Q41760708TBP domain symmetry in basal and activated archaeal transcription
Q34654319TFIIB and the regulation of transcription by RNA polymerase II.
Q27027898TFIIB-related factors in RNA polymerase I transcription
Q57721635The 2.2 Å Crystal Structure of Hsp33
Q38977021The Structural Basis of Transcription: 10 Years After the Nobel Prize in Chemistry
Q44013210The Sulfolobus solfataricus Lrp-like protein LysM regulates lysine biosynthesis in response to lysine availability
Q27008532The TrmB family: a versatile group of transcriptional regulators in Archaea
Q30860807The role of transcription factor B in transcription initiation and promoter clearance in the archaeon Sulfolobus acidocaldarius.
Q46946945Topography of the euryarchaeal transcription initiation complex
Q38823441Transcription Regulation in Archaea
Q34141508Transcription factors: global and detailed views
Q34094195Understanding the adaptation of Halobacterium species NRC-1 to its extreme environment through computational analysis of its genome sequence

Search more.