Eukaryotic and archaeal TBP and TFB/TF(II)B follow different promoter DNA bending pathways

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Eukaryotic and archaeal TBP and TFB/TF(II)B follow different promoter DNA bending pathways is …
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scholarly articleQ13442814

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P356DOI10.1093/NAR/GKU273
P932PMC publication ID4041446
P698PubMed publication ID24744242
P5875ResearchGate publication ID261773236

P50authorFabian BlombachQ30348948
Finn WernerQ64675901
Philipp TinnefeldQ67474187
Dina GrohmannQ91312357
Phil HolzmeisterQ112063136
Don C. LambQ42425367
P2093author name stringAndreas Gietl
Lena Voith von Voithenberg
Sarah Schulz
P2860cites workThe structural basis for the oriented assembly of a TBP/TFB/promoter complexQ24644960
The origin and evolution of Archaea: a state of the artQ24669622
Activation of archaeal transcription by recruitment of the TATA-binding proteinQ24677869
TATA element recognition by the TATA box-binding protein has been conserved throughout evolutionQ27620828
Structural basis of preinitiation complex assembly on human pol II promotersQ27620858
Origins of protein stability revealed by comparing crystal structures of TATA binding proteinsQ27642955
The crystal structure of a hyperthermophilic archaeal TATA-box binding proteinQ27734618
The 2.1-A crystal structure of an archaeal preinitiation complex: TATA-box-binding protein/transcription factor (II)B core/TATA-boxQ27738757
Organization and expression of eucaryotic split genes coding for proteinsQ27861081
Saccharomyces cerevisiae transcription factors IIIB and IIIC bend the DNA of a tRNA(Gln) geneQ27935879
A subunit of yeast TFIIIC participates in the recruitment of TATA-binding proteinQ27937842
Conservation between the RNA polymerase I, II, and III transcription initiation machineriesQ28260650
Efficient Binding of NC2⋅TATA-binding Protein to DNA in the Absence of TATAQ28296028
Temperature, stability, and the hydrophobic interactionQ30429103
Stepwise bending of DNA by a single TATA-box binding protein.Q30477147
Shot-noise limited single-molecule FRET histograms: comparison between theory and experimentsQ30499969
A practical guide to single-molecule FRETQ30544576
The role of transcription factor B in transcription initiation and promoter clearance in the archaeon Sulfolobus acidocaldarius.Q30860807
Fluorescence-aided molecule sorting: analysis of structure and interactions by alternating-laser excitation of single moleculesQ33203383
The yeast TAF145 inhibitory domain and TFIIA competitively bind to TATA-binding proteinQ33771547
Disentangling subpopulations in single-molecule FRET and ALEX experiments with photon distribution analysis.Q34190212
Mechanism and regulation of transcription in archaeaQ34205041
The TATA-binding protein core domain in solution variably bends TATA sequences via a three-step binding mechanism.Q51835651
Two transcription factors related with the eucaryal transcription factors TATA-binding protein and transcription factor IIB direct promoter recognition by an archaeal RNA polymerase.Q54576699
NC2 mobilizes TBP on core promoter TATA boxes.Q55045569
TATA-binding protein recognition and bending of a consensus promoter are protein species dependent.Q55050069
TFIIA Changes the Conformation of the DNA in TBP/TATA Complexes and Increases their Kinetic StabilityQ61058408
Marked stepwise differences within a common kinetic mechanism characterize TATA-binding protein interactions with two consensus promotersQ64379801
Intermediate species possessing bent DNA are present along the pathway to formation of a final TBP-TATA complexQ64381448
Ammonia/potassium exchange in methanogenic bacteriaQ70648481
DNA sequence-dependent differences in TATA-binding protein-induced DNA bending in solution are highly sensitive to osmolytesQ73692856
Is gene expression in Halobacterium NRC-1 regulated by multiple TBP and TFB transcription factors?Q73874047
Crystal structure of Methanococcus jannaschii TATA box-binding proteinQ83008113
FRET (fluorescence resonance energy transfer) sheds light on transcriptionQ83294636
DNA origami as biocompatible surface to match single-molecule and ensemble experimentsQ34241375
General transcription factors and subunits of RNA polymerase III: Paralogs for promoter- and cell type-specific transcription in multicellular eukaryotesQ34503517
Transcriptional regulation in Saccharomyces cerevisiae: transcription factor regulation and function, mechanisms of initiation, and roles of activators and coactivators.Q35542072
The initiation factor TFE and the elongation factor Spt4/5 compete for the RNAP clamp during transcription initiation and elongationQ35571747
Architecture of the yeast RNA polymerase II open complex and regulation of activity by TFIIFQ35665498
General transcription factor specified global gene regulation in archaeaQ35721656
Metabolic Pathways in Methanococcus jannaschii and Other Methanogenic BacteriaQ36064785
RNA polymerase II cofactor PC2 facilitates activation of transcription by GAL4-AH in vitroQ36654773
Orientation of the transcription preinitiation complex in archaeaQ36698728
Protein-coding gene promoters in Methanocaldococcus (Methanococcus) jannaschii.Q37235338
Evolution of multisubunit RNA polymerases in the three domains of life.Q37828367
Archaeal RNA polymerase and transcription regulation.Q37830691
Recent advances in the understanding of archaeal transcription.Q37877395
Yeast TATA binding protein interaction with DNA: fluorescence determination of oligomeric state, equilibrium binding, on-rate, and dissociation kineticsQ38294100
Bending of the Saccharomyces cerevisiae 5S rRNA gene in transcription factor complexesQ38324620
Sequence-specific DNA binding by the S. shibatae TFIIB homolog, TFB, and its effect on promoter strengthQ38335620
Osmoadaptation in archaeaQ39481455
Regulation of cation transport in Saccharomyces cerevisiae by the salt tolerance gene HAL3.Q40017303
The archaeal TFIIEalpha homologue facilitates transcription initiation by enhancing TATA-box recognitionQ42246217
Pulsed interleaved excitationQ42251940
Direct modulation of RNA polymerase core functions by basal transcription factors.Q42483408
Mechanism of autoregulation by an archaeal transcriptional repressorQ42490833
Mot1, a global repressor of RNA polymerase II transcription, inhibits TBP binding to DNA by an ATP-dependent mechanism.Q42492924
Site-specific cation binding mediates TATA binding protein-DNA interaction from a hyperthermophilic archaeonQ43591658
The effects of salts on the free energies of nonpolar groups in model peptidesQ44890966
Alternative outcomes in assembly of promoter complexes: the roles of TBP and a flexible linker in placing TFIIIB on tRNA genesQ46131755
TATA-flanking sequences influence the rate and stability of TATA-binding protein and TFIIB bindingQ46145585
In vivo measurement of cytosolic and mitochondrial pH using a pH-sensitive GFP derivative in Saccharomyces cerevisiae reveals a relation between intracellular pH and growthQ46178008
The crenarchaeal DNA damage-inducible transcription factor B paralogue TFB3 is a general activator of transcriptionQ47750964
Native human TATA-binding protein simultaneously binds and bends promoter DNA without a slow isomerization step or TFIIB requirementQ47854853
P275copyright licenseCreative Commons Attribution 3.0 UnportedQ14947546
P6216copyright statuscopyrightedQ50423863
P433issue10
P407language of work or nameEnglishQ1860
P304page(s)6219-6231
P577publication date2014-04-17
P1433published inNucleic Acids ResearchQ135122
P1476titleEukaryotic and archaeal TBP and TFB/TF(II)B follow different promoter DNA bending pathways
P478volume42

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cites work (P2860)
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