| scholarly article | Q13442814 |
| P50 | author | Richard H. Ebright | Q7326144 |
| Finn Werner | Q64675901 | ||
| Dina Grohmann | Q91312357 | ||
| Daniel Klose | Q42186445 | ||
| P2093 | author name string | Anirban Chakraborty | |
| Jens Michaelis | |||
| Julia Nagy | |||
| Daniel Fielden | |||
| P2860 | cites work | Factor requirements for transcription in the Archaeon Sulfolobus shibatae | Q24532204 |
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| Structural Basis for Converting a General Transcription Factor into an Operon-Specific Virulence Regulator | Q27644445 | ||
| The X-ray crystal structure of RNA polymerase from Archaea | Q27649741 | ||
| Two Structurally Independent Domains of E. coli NusG Create Regulatory Plasticity via Distinct Interactions with RNA Polymerase and Regulators | Q27655760 | ||
| RNA polymerase II-TFIIB structure and mechanism of transcription initiation | Q27657756 | ||
| Structure of an RNA Polymerase II-TFIIB Complex and the Transcription Initiation Mechanism | Q27658448 | ||
| Spt4/5 stimulates transcription elongation through the RNA polymerase clamp coiled-coil motif | Q27660089 | ||
| RNA polymerase I contains a TFIIF-related DNA-binding subcomplex | Q27664195 | ||
| RNA polymerase and transcription elongation factor Spt4/5 complex structure | Q27666396 | ||
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| Genetic analysis of the large subunit of yeast transcription factor IIE reveals two regions with distinct functions | Q27933410 | ||
| The Rpb4 subunit of RNA polymerase II contributes to cotranscriptional recruitment of 3' processing factors | Q27934138 | ||
| RNA polymerase II elongation factors Spt4p and Spt5p play roles in transcription elongation by RNA polymerase I and rRNA processing | Q27934335 | ||
| RNA-Binding to Archaeal RNA Polymerase Subunits F/E: A DEER and FRET Study | Q57767568 | ||
| The RPB7 orthologue E' is required for transcriptional activity of a reconstituted archaeal core enzyme at low temperatures and stimulates open complex formation | Q79802918 | ||
| RNAP subunits F/E (RPB4/7) are stably associated with archaeal RNA polymerase: using fluorescence anisotropy to monitor RNAP assembly in vitro | Q83986672 | ||
| Mechanism of ATP-dependent promoter melting by transcription factor IIH | Q28145224 | ||
| DNA topology and a minimal set of basal factors for transcription by RNA polymerase II | Q28646851 | ||
| Increasing the precision of comparative models with YASARA NOVA-a self-parameterizing force field | Q28874041 | ||
| The Increase in the Number of Subunits in Eukaryotic RNA Polymerase III Relative to RNA Polymerase II Is due to the Permanent Recruitment of General Transcription Factors | Q30054744 | ||
| Single-molecule tracking of mRNA exiting from RNA polymerase II | Q33312549 | ||
| Structural organization of bacterial RNA polymerase holoenzyme and the RNA polymerase-promoter open complex | Q33957853 | ||
| A recombinant RNA polymerase II-like enzyme capable of promoter-specific transcription | Q34156990 | ||
| A novel zinc finger structure in the large subunit of human general transcription factor TFIIE. | Q34350854 | ||
| A fully recombinant system for activator-dependent archaeal transcription. | Q34358995 | ||
| Functional analysis of Thermus thermophilus transcription factor NusG | Q34367978 | ||
| Single-molecule fluorescence resonance energy transfer reveals a dynamic equilibrium between closed and open conformations of syntaxin 1. | Q34788804 | ||
| The elongation factor RfaH and the initiation factor sigma bind to the same site on the transcription elongation complex | Q36458847 | ||
| Orientation of the transcription preinitiation complex in archaea | Q36698728 | ||
| The positions of TFIIF and TFIIE in the RNA polymerase II transcription preinitiation complex. | Q36791306 | ||
| Advances in single-molecule fluorescence methods for molecular biology | Q37138480 | ||
| Identification of an ortholog of the eukaryotic RNA polymerase III subunit RPC34 in Crenarchaeota and Thaumarchaeota suggests specialization of RNA polymerases for coding and non-coding RNAs in Archaea | Q37405770 | ||
| Hold on!: RNA polymerase interactions with the nascent RNA modulate transcription elongation and termination. | Q37753696 | ||
| Evolution of multisubunit RNA polymerases in the three domains of life. | Q37828367 | ||
| Archaeal RNA polymerase and transcription regulation. | Q37830691 | ||
| In Vivo Evidence that Defects in the Transcriptional Elongation Factors RPB2, TFIIS, and SPT5 Enhance Upstream Poly(A) Site Utilization | Q39940501 | ||
| Photo-cross-linking of a purified preinitiation complex reveals central roles for the RNA polymerase II mobile clamp and TFIIE in initiation mechanisms. | Q40468992 | ||
| The requirement for the basal transcription factor IIE is determined by the helical stability of promoter DNA. | Q40805836 | ||
| Opening of an RNA polymerase II promoter occurs in two distinct steps and requires the basal transcription factors IIE and IIH. | Q41064467 | ||
| Insights into transcription initiation and termination from the electron microscopy structure of yeast RNA polymerase III. | Q41624816 | ||
| Nano positioning system reveals the course of upstream and nontemplate DNA within the RNA polymerase II elongation complex | Q42069878 | ||
| The archaeal TFIIEalpha homologue facilitates transcription initiation by enhancing TATA-box recognition | Q42246217 | ||
| Direct modulation of RNA polymerase core functions by basal transcription factors. | Q42483408 | ||
| Molecular mechanisms of RNA polymerase--the F/E (RPB4/7) complex is required for high processivity in vitro. | Q42931212 | ||
| Addition of p-azido-L-phenylalanine to the genetic code of Escherichia coli | Q44083343 | ||
| DNA-binding orientation and domain conformation of the E. coli rep helicase monomer bound to a partial duplex junction: single-molecule studies of fluorescently labeled enzymes. | Q44751757 | ||
| Transcription factor E is a part of transcription elongation complexes | Q46962379 | ||
| A nano-positioning system for macromolecular structural analysis | Q46970764 | ||
| P433 | issue | 2 | |
| P304 | page(s) | 263-274 | |
| P577 | publication date | 2011-07-01 | |
| P1433 | published in | Molecular Cell | Q3319468 |
| P1476 | title | The initiation factor TFE and the elongation factor Spt4/5 compete for the RNAP clamp during transcription initiation and elongation | |
| P478 | volume | 43 |
| Q38935995 | A global analysis of transcription reveals two modes of Spt4/5 recruitment to archaeal RNA polymerase. |
| Q37981476 | A nexus for gene expression-molecular mechanisms of Spt5 and NusG in the three domains of life |
| Q28481750 | A positive feedback loop links opposing functions of P-TEFb/Cdk9 and histone H2B ubiquitylation to regulate transcript elongation in fission yeast |
| Q38255801 | A starting point for fluorescence-based single-molecule measurements in biomolecular research. |
| Q43158428 | Analyses of in vivo interactions between transcription factors and the archaeal RNA polymerase |
| Q64102109 | Ancient Transcription Factors in the News |
| Q41229953 | Archaeal TFEα/β is a hybrid of TFIIE and the RNA polymerase III subcomplex hRPC62/39. |
| Q38077253 | Archaeal transcription: making up for lost time |
| Q38077255 | Archaeology of RNA polymerase: factor swapping during the transcription cycle. |
| Q27938034 | Architecture of the RNA polymerase II preinitiation complex and mechanism of ATP-dependent promoter opening |
| Q30855405 | Architecture of the RNA polymerase II-Paf1C-TFIIS transcription elongation complex |
| Q51745496 | Association of the winged helix motif of the TFIIEα subunit of TFIIE with either the TFIIEβ subunit or TFIIB distinguishes its functions in transcription. |
| Q88609298 | Born to run: control of transcription elongation by RNA polymerase II |
| Q50015077 | CDK regulation of transcription by RNAP II: Not over 'til it's over? |
| Q42131187 | Cap completion and C-terminal repeat domain kinase recruitment underlie the initiation-elongation transition of RNA polymerase II. |
| Q93388181 | Cdk7: a kinase at the core of transcription and in the crosshairs of cancer drug discovery |
| Q54293750 | Complete architecture of the archaeal RNA polymerase open complex from single-molecule FRET and NPS. |
| Q37103512 | Cyclin-dependent kinase control of the initiation-to-elongation switch of RNA polymerase II |
| Q92527353 | DAF-16/FOXO requires Protein Phosphatase 4 to initiate transcription of stress resistance and longevity promoting genes |
| Q103804238 | Direct binding of TFEα opens DNA binding cleft of RNA polymerase |
| Q58794599 | Displacement of the transcription factor B reader domain during transcription initiation |
| Q96641354 | Dissecting the Pol II transcription cycle and derailing cancer with CDK inhibitors |
| Q98784809 | Distinct Cdk9-phosphatase switches act at the beginning and end of elongation by RNA polymerase II |
| Q64448565 | Effect of UV irradiation on Sulfolobus acidocaldarius and involvement of the general transcription factor TFB3 in the early UV response |
| Q57044797 | Elongation/Termination Factor Exchange Mediated by PP1 Phosphatase Orchestrates Transcription Termination |
| Q35910114 | Emerging Views on the CTD Code |
| Q38220144 | Enhancing single-molecule fluorescence with nanophotonics |
| Q33698578 | Eukaryotic and archaeal TBP and TFB/TF(II)B follow different promoter DNA bending pathways |
| Q38442397 | Fluorescently labeled recombinant RNAP system to probe archaeal transcription initiation. |
| Q35668750 | Inactivated RNA polymerase II open complexes can be reactivated with TFIIE. |
| Q33791149 | Insights into how Spt5 functions in transcription elongation and repressing transcription coupled DNA repair |
| Q27679041 | Interaction of the Mediator Head Module with RNA Polymerase II |
| Q64269432 | MYC Recruits SPT5 to RNA Polymerase II to Promote Processive Transcription Elongation |
| Q26851218 | Mutual relationships between transcription and pre-mRNA processing in the synthesis of mRNA |
| Q34655602 | NusG-Spt5 proteins-Universal tools for transcription modification and communication |
| Q37688835 | Pause, play, repeat: CDKs push RNAP II's buttons |
| Q28534759 | Pleiohomeotic interacts with the core transcription elongation factor Spt5 to regulate gene expression in Drosophila |
| Q52335725 | Precision and accuracy in smFRET based structural studies-A benchmark study of the Fast-Nano-Positioning System. |
| Q89893272 | Probing Mechanisms of Transcription Elongation Through Cell-to-Cell Variability of RNA Polymerase |
| Q27012720 | Promoter clearance by RNA polymerase II |
| Q40500584 | Quantitative structural information from single-molecule FRET. |
| Q36436719 | RNA polymerase III subunit architecture and implications for open promoter complex formation |
| Q33758327 | RNA-dependent chromatin association of transcription elongation factors and Pol II CTD kinases. |
| Q47098832 | Regulation of transcription elongation in response to osmostress. |
| Q37439616 | Repression of RNA polymerase by the archaeo-viral regulator ORF145/RIP. |
| Q36210855 | Separate domains of fission yeast Cdk9 (P-TEFb) are required for capping enzyme recruitment and primed (Ser7-phosphorylated) Rpb1 carboxyl-terminal domain substrate recognition. |
| Q34326170 | Simulation vs. reality: a comparison of in silico distance predictions with DEER and FRET measurements |
| Q37593660 | Single-molecule FRET supports the two-state model of Argonaute action. |
| Q36368061 | Site-specific incorporation of probes into RNA polymerase by unnatural-amino-acid mutagenesis and Staudinger-Bertozzi ligation |
| Q38911587 | Structural Information from Single-molecule FRET Experiments Using the Fast Nano-positioning System |
| Q47224728 | Structural and functional adaptation of Haloferax volcanii TFEα/β. |
| Q54520668 | Structural and functional aspects of winged-helix domains at the core of transcription initiation complexes. |
| Q57165514 | Structural basis of mitochondrial transcription |
| Q38360498 | Structural basis of transcription initiation by RNA polymerase II. |
| Q30558096 | Structural insights into transcription initiation by RNA polymerase II. |
| Q34330132 | Structural visualization of key steps in human transcription initiation |
| Q51107154 | Structure and Function of RNA Polymerases and the Transcription Machineries. |
| Q39417132 | Structure and mechanisms of viral transcription factors in archaea. |
| Q47823773 | Structure of a transcribing RNA polymerase II-DSIF complex reveals a multidentate DNA-RNA clamp |
| Q48294585 | Structure of the complete elongation complex of RNA polymerase II with basal factors. |
| Q36770758 | TFE and Spt4/5 open and close the RNA polymerase clamp during the transcription cycle |
| Q64064185 | TFIIE orchestrates the recruitment of the TFIIH kinase module at promoter before release during transcription |
| Q35987692 | THZ1 Reveals Roles for Cdk7 in Co-transcriptional Capping and Pausing |
| Q38375227 | The RNA polymerase II preinitiation complex. Through what pathway is the complex assembled? |
| Q42545231 | The RNA polymerase trigger loop functions in all three phases of the transcription cycle. |
| Q55070232 | The Transcriptional Regulator TFB-RF1 Activates Transcription of a Putative ABC Transporter in Pyrococcus furiosus. |
| Q36311478 | The X-ray crystal structure of the euryarchaeal RNA polymerase in an open-clamp configuration |
| Q47873799 | The architecture of transcription elongation |
| Q42038602 | The elongation factor Spt5 facilitates transcription initiation for rapid induction of inflammatory-response genes |
| Q38461461 | The interplay between nucleoid organization and transcription in archaeal genomes |
| Q38823441 | Transcription Regulation in Archaea |
| Q27704895 | Transcription initiation complex structures elucidate DNA opening |
| Q30155189 | Transformation: the next level of regulation |
| Q28082210 | Ubiquitous transcription factors display structural plasticity and diverse functions: NusG proteins - Shifting shapes and paradigms |
| Q35939852 | Yeast Swd2 is essential because of antagonism between Set1 histone methyltransferase complex and APT (associated with Pta1) termination factor |
| Q39257468 | smFRET experiments of the RNA polymerase II transcription initiation complex. |
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