Proteomics of marine bacteria

scientific article published on June 2008

Proteomics of marine bacteria is …
instance of (P31):
review articleQ7318358
scholarly articleQ13442814

External links are
P356DOI10.1002/ELPS.200800009
P698PubMed publication ID18494036
P5875ResearchGate publication ID5356414

P50authorMichael HeckerQ1927739
Thomas SchwederQ58423700
P2093author name stringStephanie Markert
P2860cites workThe Sorcerer II Global Ocean Sampling expedition: northwest Atlantic through eastern tropical PacificQ21092763
Sequence Analysis of the Genome of the Unicellular Cyanobacterium Synechocystis sp. Strain PCC6803. II. Sequence Determination of the Entire Genome and Assignment of Potential Protein-coding RegionsQ21994433
Genome sequence of the cyanobacterium Prochlorococcus marinus SS120, a nearly minimal oxyphototrophic genomeQ21994448
Genome divergence in two Prochlorococcus ecotypes reflects oceanic niche differentiationQ21994463
Coping with cold: the genome of the versatile marine Antarctica bacterium Pseudoalteromonas haloplanktis TAC125Q22065745
Comparative genome analysis of Vibrio vulnificus, a marine pathogenQ22065766
Genome sequence of Halobacterium species NRC-1Q22066243
Functional metaproteome analysis of protein extracts from contaminated soil and groundwaterQ46878649
Proteomic analysis of heterotrophy in Synechocystis sp. PCC 6803.Q46900616
Molecular dynamics of the Shewanella oneidensis response to chromate stressQ46981337
Proteome comparison of Vibrio cholerae cultured in aerobic and anaerobic conditionsQ47924538
Improvements of high-throughput culturing yielded novel SAR11 strains and other abundant marine bacteria from the Oregon coast and the Bermuda Atlantic Time Series study siteQ48076266
Physiological proteomics of the uncultured endosymbiont of Riftia pachyptilaQ48082339
Unravelling the role of the ToxR-like transcriptional regulator WmpR in the marine antifouling bacterium Pseudoalteromonas tunicataQ48091607
A novel protein tightly bound to bacterial magnetic particles in Magnetospirillum magneticum strain AMB-1.Q48268321
Predominant growth of Alcanivorax strains in oil-contaminated and nutrient-supplemented sea waterQ48305275
A quantitative proteomic analysis of light adaptation in a globally significant marine cyanobacterium Prochlorococcus marinus MED4.Q51065849
Selective isolation of multiple positively charged peptides for 2-DE-free quantitative proteomicsQ51165270
A soluble 3D LC/MS/MS proteome of the filamentous cyanobacterium Nostoc punctiforme.Q52002925
Correlation between pigmentation and antifouling compounds produced by Pseudoalteromonas tunicata.Q52546887
Vibrio vulnificus septicemia in Korea: clinical and epidemiologic findings in seventy patients.Q53157849
Crypsis in the Pelagic EnvironmentQ56553885
Photosynthetic picoplankton community structure in the subtropical North Pacific Ocean near Hawaii (station ALOHA)Q56805269
Chemoautotrophic Potential of the Hydrothermal Vent Tube Worm, Riftia pachyptila Jones (Vestimentifera)Q57088542
Protein Extraction and Fingerprinting Optimization of Bacterial Communities in Natural EnvironmentQ57230933
Profiling the Secretome of the Marine BacteriumPseudoalteromonas tunicataUsing Amine-Specific Isobaric Tagging (iTRAQ)Q58056376
Physiology and molecular phylogeny of coexisting Prochlorococcus ecotypesQ59069640
Towards exposure of elusive metabolic mixed-culture processes: the application of metaproteomic analyses to activated sludgeQ63352029
Role of NtrC in biofilm formation via controlling expression of the gene encoding an ADP-glycero-manno-heptose-6-epimerase in the pathogenic bacterium, Vibrio vulnificus.Q64916944
Ferric iron reduction-linked growth yields of Shewanella putrefaciens MR-1Q72362716
Fractionation of Escherichia coli cell populations at different stages during growth transition to stationary phaseQ78032273
Effect of fish skin mucus on the soluble proteome of Vibrio salmonicida analysed by 2-D gel electrophoresis and tandem mass spectrometryQ79404086
Dosage-dependent proteome response of Shewanella oneidensis MR-1 to acute chromate challengeQ80039921
Riftia pachyptila Jones: Observations on the Vestimentiferan Worm from the Galapagos RiftQ81143580
Proteome analysis of salt stress response in the cyanobacterium Synechocystis sp. strain PCC 6803Q83008543
Genome sequence of the dissimilatory metal ion–reducing bacterium Shewanella oneidensisQ22122107
DNA sequence of both chromosomes of the cholera pathogen Vibrio choleraeQ22122394
Genome sequencing in microfabricated high-density picolitre reactorsQ24544260
Cloning and stable maintenance of 300-kilobase-pair fragments of human DNA in Escherichia coli using an F-factor-based vectorQ24563904
The state of the art in the analysis of two-dimensional gel electrophoresis imagesQ24647021
Complete genome sequence of Methanobacterium thermoautotrophicum deltaH: functional analysis and comparative genomicsQ24676592
Light-activated heterotrophic growth of the cyanobacterium Synechocystis sp. strain PCC 6803: a blue-light-requiring processQ24677384
Complete genome sequence of the marine planctomycete Pirellula sp. strain 1Q24679932
High content of proteins containing 21st and 22nd amino acids, selenocysteine and pyrrolysine, in a symbiotic deltaproteobacterium of gutless worm Olavius algarvensisQ24683921
Characterization of uncultivated prokaryotes: isolation and analysis of a 40-kilobase-pair genome fragment from a planktonic marine archaeonQ24684858
Metaproteomic analysis of Chesapeake Bay microbial communitiesQ24815619
Environmental genome shotgun sequencing of the Sargasso SeaQ27860605
Marine phage genomics: what have we learned?Q28257033
Bacterial rhodopsin: evidence for a new type of phototrophy in the seaQ29622887
Proteomics of Synechocystis sp. strain PCC 6803. Identification of periplasmic proteins in cells grown at low and high salt concentrationsQ30656372
Construction and analysis of bacterial artificial chromosome libraries from a marine microbial assemblageQ30662164
Proteome analysis of sorbitol fermentation specific protein in Vibrio cholerae by 2-DE and MS.Q30810604
Effect of mild acid pH on the functioning of bacterial membranes in Vibrio choleraeQ30835284
Screening for novel enzymes for biocatalytic processes: accessing the metagenome as a resource of novel functional sequence spaceQ30874362
Proteomics of Synechocystis sp. strain PCC 6803: identification of plasma membrane proteinsQ30883161
Culturability and In situ abundance of pelagic bacteria from the North SeaQ30883516
Taxonomic heterogeneity within the Planctomycetales as derived by DNA-DNA hybridization, description of Rhodopirellula baltica gen. nov., sp. nov., transfer of Pirellula marina to the genus Blastopirellula gen. nov. as Blastopirellula marina comb. nQ30962256
Molecular detection of marine bacterial populations on beaches contaminated by the Nakhodka tanker oil-spill accident.Q30989676
Proteorhodopsin phototrophy in the ocean.Q30995537
Proteomics of the dissimilatory iron-reducing bacterium Shewanella oneidensis MR-1, using a matrix-assisted laser desorption/ionization-tandem-time of flight mass spectrometerQ31022009
Proteome of Caulobacter crescentus cell cycle publicly accessible on SWICZ serverQ31027110
Shotgun proteomics of cyanobacteria--applications of experimental and data-mining techniquesQ31044163
A proteome reference map for Vibrio cholerae El Tor.Q31076704
Approaches to prokaryotic biodiversity: a population genetics perspective.Q31119767
Analysis of the cytosolic proteome of Halobacterium salinarum and its implication for genome annotation.Q31137369
Pseudoalteromonas tunicata sp. nov., a bacterium that produces antifouling agentsQ31966981
Genomic analysis reveals chromosomal variation in natural populations of the uncultured psychrophilic archaeon Cenarchaeum symbiosumQ32016534
Alcanivorax borkumensis gen. nov., sp. nov., a new, hydrocarbon-degrading and surfactant-producing marine bacterium.Q32025432
Characterization of the bacterial magnetosome membraneQ36189137
Responses to multiple-nutrient starvation in marine Vibrio sp. strain CCUG 15956Q36192958
Metaproteomics: studying functional gene expression in microbial ecosystemsQ36365983
Symbioses between bacteria and gutless marine oligochaetesQ36453171
Real-time quantitative PCR for assessment of abundance of Pseudoalteromonas species in marine samplesQ37317996
Expression and regulation pattern of ferritin-like DpsA in the archaeon Halobacterium SalinarumQ38321148
Identification of 42 possible cytochrome C genes in the Shewanella oneidensis genome and characterization of six soluble cytochromesQ38342066
CyanoBase, a www database containing the complete nucleotide sequence of the genome of Synechocystis sp. strain PCC6803Q38554672
Alterations in the proteome of the Euprymna scolopes light organ in response to symbiotic Vibrio fischeriQ39487552
Magnetic guidance of organismsQ40181906
Strategies for the discovery of secondary metabolites from marine bacteria: ecological perspectivesQ40572989
Biochemical and proteomic analysis of the magnetosome membrane in Magnetospirillum gryphiswaldenseQ40604358
Of genomes and proteomesQ41384263
Marine microorganisms as a source of new natural products.Q41428377
Global analysis of physiological responses in marine bacteriaQ41594906
Proteomic insights into metabolic adaptations in Alcanivorax borkumensis induced by alkane utilizationQ41671417
Towards a proteome project of cyanobacterium Synechocystis sp. strain PCC6803: linking 130 protein spots with their respective genesQ42663855
Proteomic identification of a two-component regulatory system in Pseudoalteromonas haloplanktis TAC125.Q43020624
Large-scale identification of N-terminal peptides in the halophilic archaea Halobacterium salinarum and Natronomonas pharaonisQ43022509
Analysis of the Shewanella oneidensis proteome by two‐dimensional gel electrophoresis under nondenaturing conditionsQ44442226
Proteomics of Shewanella oneidensis MR-1 biofilm reveals differentially expressed proteins, including AggA and RibB.Q45265860
Growth and magnetosome formation by microaerophilic Magnetospirillum strains in an oxygen-controlled fermentorQ46287058
Metabolic versatility of the Riftia pachyptila endosymbiont revealed through metagenomicsQ46780631
Screening of a fosmid library of marine environmental genomic DNA fragments reveals four clones related to members of the order PlanctomycetalesQ32047566
Prospecting for biocatalysts and drugs in the genomes of non-cultured microorganismsQ33205523
Comparison of protein and peptide prefractionation methods for the shotgun proteomic analysis of Synechocystis sp. PCC 6803.Q33214813
Growth phase dependent regulation of protein composition in Rhodopirellula baltica.Q33218776
Proteomic analysis of carbohydrate catabolism and regulation in the marine bacterium Rhodopirellula balticaQ33222454
Towards the proteome of the marine bacterium Rhodopirellula baltica: mapping the soluble proteinsQ33222455
Proteomic analysis of the heat shock response in Synechocystis PCC6803 and a thermally tolerant knockout strain lacking the histidine kinase 34 geneQ33231144
Proteomic analysis of pathogenic bacterium Vibrio vulnificusQ33231980
Proteomic characterization of acid stress response in Synechocystis sp. PCC 6803.Q33243193
Quantitative profiling of the membrane proteome in a halophilic archaeonQ33248096
Genome and proteome characterization of the psychrophilic Flavobacterium bacteriophage 11b.Q33255252
The low molecular weight proteome of Halobacterium salinarumQ33275791
Matching phylogeny and metabolism in the uncultured marine bacteria, one cell at a timeQ33284592
Functional proteomic view of metabolic regulation in "Aromatoleum aromaticum" strain EbN1.Q33286735
Detailed proteome analysis of growing cells of the planctomycete Rhodopirellula baltica SH1T.Q33323700
Endosymbiotic sulphate-reducing and sulphide-oxidizing bacteria in an oligochaete wormQ33947172
Molecular biological access to the chemistry of unknown soil microbes: a new frontier for natural productsQ34067905
Biogeography and ecological setting of Indian Ocean hydrothermal vents.Q34091304
Understanding the adaptation of Halobacterium species NRC-1 to its extreme environment through computational analysis of its genome sequenceQ34094195
Comparative genomic analysis of archaeal genotypic variants in a single population and in two different oceanic provincesQ34096903
Transcriptional and proteomic analysis of a ferric uptake regulator (fur) mutant of Shewanella oneidensis: possible involvement of fur in energy metabolism, transcriptional regulation, and oxidative stressQ34099925
Cultivation of the ubiquitous SAR11 marine bacterioplankton clade.Q34143482
Magnetosome formation in prokaryotesQ34313355
Cultivating the unculturedQ34388876
Symbiosis insights through metagenomic analysis of a microbial consortiumQ34566687
Genome sequence of the ubiquitous hydrocarbon-degrading marine bacterium Alcanivorax borkumensisQ34569476
Metaproteomics: a new approach for studying functional microbial ecologyQ34618805
Prokaryotic Cells in the Hydrothermal Vent Tube Worm Riftia pachyptila Jones: Possible Chemoautotrophic Symbionts.Q34681597
Marine phage genomicsQ35019459
Repair of UV damage in Halobacterium salinarumQ35139426
Proteomic analysis of the bacterial cell cycleQ35292736
Separation of marine bacteria according to buoyant density by use of the density-dependent cell sorting methodQ35689682
Numerical approaches for quantitative analysis of two-dimensional maps: a review of commercial software and home-made systemsQ36019449
P433issue12
P304page(s)2603-2616
P577publication date2008-06-01
P1433published inElectrophoresisQ3050608
P1476titleProteomics of marine bacteria
P478volume29

Reverse relations

cites work (P2860)
Q37632971Abiotic Stress Responses and Microbe-Mediated Mitigation in Plants: The Omics Strategies
Q33779878Cytoplasmic and periplasmic proteomic signatures of exponentially growing cells of the psychrophilic bacterium Pseudoalteromonas haloplanktis TAC125.
Q37949591Inflammation as an animal development phenomenon.
Q58806341Integrated metagenomic and metaproteomic analyses of an ANME-1-dominated community in marine cold seep sediments
Q33801083Marine metagenomics: new tools for the study and exploitation of marine microbial metabolism.
Q33389336Metagenomics approaches in systems microbiology
Q37981079Protein fractionation and detection for metalloproteomics: challenges and approaches
Q38594763Proteomics of the Roseobacter clade, a window to the marine microbiology landscape.

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