Metagenomics approaches in systems microbiology

scientific article

Metagenomics approaches in systems microbiology is …
instance of (P31):
review articleQ7318358
scholarly articleQ13442814

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P356DOI10.1111/J.1574-6976.2008.00152.X
P8608Fatcat IDrelease_65yehsiwlze3nl6nscofedgt5y
P698PubMed publication ID19054115
P5875ResearchGate publication ID23569059

P50authorPeter GolyshinQ50636134
Ana BeloquiQ56798455
María-Eugenia GuazzaroniQ56989314
Manuel FerrerQ46762101
P2093author name stringJosé M Vieites
P2860cites workBioinformatics for whole-genome shotgun sequencing of microbial communitiesQ21145697
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The personal genome projectQ24672587
MEGAN analysis of metagenomic dataQ24673516
mRNA extraction and reverse transcription-PCR protocol for detection of nifH gene expression by Azotobacter vinelandii in soilQ24675567
Microbial diversity in the deep sea and the underexplored "rare biosphere"Q24685531
PHACCS, an online tool for estimating the structure and diversity of uncultured viral communities using metagenomic informationQ24806209
Metaproteomic analysis of Chesapeake Bay microbial communitiesQ24815619
An obesity-associated gut microbiome with increased capacity for energy harvestQ27860515
Environmental genome shotgun sequencing of the Sargasso SeaQ27860605
A metagenomic survey of microbes in honey bee colony collapse disorderQ28247041
Obligate oil-degrading marine bacteriaQ28301598
Phylogenetic classification of short environmental DNA fragmentsQ28754706
Compact, universal DNA microarrays to comprehensively determine transcription-factor binding site specificitiesQ29301030
Community structure and metabolism through reconstruction of microbial genomes from the environmentQ29547528
Comparative metagenomics of microbial communitiesQ29555844
Relative impact of nucleotide and copy number variation on gene expression phenotypesQ29614883
Metagenomic and functional analysis of hindgut microbiota of a wood-feeding higher termiteQ29618893
Functional metagenomic profiling of nine biomesQ30014835
The gene cassette metagenome is a basic resource for bacterial genome evolutionQ30919384
Integration of metabolome data with metabolic networks reveals reporter reactionsQ31064013
RNA fingerprinting--a new method to screen for differences in plant litter degrading microbial communitiesQ31112576
The micro-Petri dish, a million-well growth chip for the culture and high-throughput screening of microorganismsQ31135704
Metagenomic analyses of an uncultured viral community from human fecesQ33193633
Metagenome survey of biofilms in drinking-water networks.Q33195718
Uncultured soil bacteria are a reservoir of new antibiotic resistance genesQ33205796
Metagenomics and industrial applicationsQ33216319
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Miniaturising the laboratory in emulsion dropletsQ33250313
Archaea predominate among ammonia-oxidizing prokaryotes in soilsQ33254300
Metaproteomics approach to study the functionality of the microbiota in the human infant gastrointestinal tractQ33266094
Metaproteomic analysis of a bacterial community response to cadmium exposure.Q33272465
Matching phylogeny and metabolism in the uncultured marine bacteria, one cell at a timeQ33284592
New directions and interactions in metagenomics researchQ36390958
Population genomics in natural microbial communitiesQ36543363
Metagenomics, biotechnology with non-culturable microbesQ36775351
Metagenomic signatures of the Peru Margin subseafloor biosphere show a genetically distinct environmentQ36802597
Mining enzymes from extreme environments.Q36840330
The potential of metabolomics tools in bioremediation studiesQ36947090
The isotope array, a new tool that employs substrate-mediated labeling of rRNA for determination of microbial community structure and functionQ37055203
Proteomics of marine bacteriaQ37169320
Oligonucleotide microarray for the study of functional gene diversity in the nitrogen cycle in the environment.Q38357954
Global RNA half-life analysis in Escherichia coli reveals positional patterns of transcript degradationQ38358024
Quantitative detection of microbial genes by using DNA microarraysQ39639214
Movement of viruses between biomesQ40171794
Microarray and functional gene analyses of sulfate-reducing prokaryotes in low-sulfate, acidic fens reveal cooccurrence of recognized genera and novel lineagesQ40621535
Substrate-dependent regulation of anaerobic degradation pathways for toluene and ethylbenzene in a denitrifying bacterium, strain EbN1.Q40942939
Global analysis of mRNA stability in the archaeon SulfolobusQ41838953
Using growing self-organising maps to improve the binning process in environmental whole-genome shotgun sequencingQ41957179
mRNA-based parallel detection of active methanotroph populations by use of a diagnostic microarrayQ43234578
High-density sampling of a bacterial operon using mRNA differential displayQ43762437
Community proteogenomics highlights microbial strain-variant protein expression within activated sludge performing enhanced biological phosphorus removalQ43988973
Development and evaluation of microarray-based whole-genome hybridization for detection of microorganisms within the context of environmental applicationsQ45237418
Strain-resolved community proteomics reveals recombining genomes of acidophilic bacteria.Q45987168
Community proteomics of a natural microbial biofilmQ46632593
Ammonia-oxidizing bacterial community composition in estuarine and oceanic environments assessed using a functional gene microarrayQ33297418
Metagenomic characterization of Chesapeake Bay virioplanktonQ33301875
Single-cell genomic sequencing using Multiple Displacement AmplificationQ33301988
Soil eukaryotic functional diversity, a metatranscriptomic approachQ33307517
Biodiversity and biogeography of phages in modern stromatolites and thrombolites.Q33321846
Genetic networks of liver metabolism revealed by integration of metabolic and transcriptional profilingQ33325905
Species divergence and the measurement of microbial diversityQ33330731
Metagenome microarray for screening of fosmid clones containing specific genesQ33332328
Recent trends in industrial microbiologyQ33343800
Identity and abundance of active sulfate-reducing bacteria in deep tidal flat sediments determined by directed cultivation and CARD-FISH analysisQ33351733
Metagenomics for mining new genetic resources of microbial communitiesQ33380038
Genomic insights that advance the species definition for prokaryotesQ33850939
Dissecting biological "dark matter" with single-cell genetic analysis of rare and uncultivated TM7 microbes from the human mouthQ34005081
Development and evaluation of genome-probing microarrays for monitoring lactic acid bacteria.Q34232625
Biosynthesis of human papillomavirus from a continuous cell line upon epithelial differentiationQ34236875
A conspicuous nickel protein in microbial mats that oxidize methane anaerobicallyQ34285064
Symbiosis insights through metagenomic analysis of a microbial consortiumQ34566687
Whole-genome re-sequencingQ34571951
Archaeal mysteries of the deep revealedQ34597648
The promise and peril of transcriptional profiling in biofilm communitiesQ34638130
Metagenomic and small-subunit rRNA analyses reveal the genetic diversity of bacteria, archaea, fungi, and viruses in soilQ34683148
Metagenomic analysis of the microbial community associated with the coral Porites astreoides.Q34699516
Microarray-based analysis of subnanogram quantities of microbial community DNAs by using whole-community genome amplificationQ34719033
Direct profiling of environmental microbial populations by thermal dissociation analysis of native rRNAs hybridized to oligonucleotide microarraysQ34992517
Integrating global gene expression analysis and geneticsQ35029791
Analysis of environmental microbial communities by reverse sample genome probingQ35091227
Microarrays for bacterial detection and microbial community analysisQ35165307
Interplay of transcriptomics and proteomicsQ35603060
Detection of genes involved in biodegradation and biotransformation in microbial communities by using 50-mer oligonucleotide microarraysQ35663092
Environmental genomics, the big picture?Q35694144
Oligonucleotide microarrays in microbial diagnosticsQ35804673
Molecular biology and DNA microarray technology for microbial quality monitoring of waterQ35921309
Environmental microbiology-on-a-chip and its future impacts.Q36076130
P433issue1
P921main subjectmetagenomicsQ903778
P304page(s)236-255
P577publication date2008-11-24
P1433published inFEMS Microbiology ReviewsQ15762226
P1476titleMetagenomics approaches in systems microbiology
P478volume33

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