| scholarly article | Q13442814 |
| P50 | author | Shin Haruta | Q57050384 |
| Kyosuke Yamamoto | Q83483600 | ||
| P2860 | cites work | Zooming in to see the bigger picture: microfluidic and nanofabrication tools to study bacteria. | Q38262492 |
| Bdellovibrio predation in the presence of decoys: Three-way bacterial interactions revealed by mathematical and experimental analyses | Q38667677 | ||
| Identification of a conserved bacterial protein secretion system in Vibrio cholerae using the Dictyostelium host model system | Q24537443 | ||
| Bioaugmentation of activated sludge by an indigenous 3-chloroaniline-degrading Comamonas testosteroni strain, I2gfp | Q24550513 | ||
| Pyrosequencing enumerates and contrasts soil microbial diversity | Q24616826 | ||
| Insect symbionts in food webs | Q26740148 | ||
| Metabolic Network Modeling of Microbial Interactions in Natural and Engineered Environmental Systems | Q26744686 | ||
| Microbial interactions and community assembly at microscales | Q26745554 | ||
| The information science of microbial ecology | Q26749386 | ||
| Public goods and metabolic strategies | Q26750956 | ||
| Towards an Enhanced Understanding of Plant-Microbiome Interactions to Improve Phytoremediation: Engineering the Metaorganism | Q26751056 | ||
| Co-culture systems and technologies: taking synthetic biology to the next level | Q27007227 | ||
| The Hidden World within Plants: Ecological and Evolutionary Considerations for Defining Functioning of Microbial Endophytes | Q27008650 | ||
| Counteraction of antibiotic production and degradation stabilizes microbial communities | Q27316556 | ||
| Metatranscriptomics reveals the molecular mechanism of large granule formation in granular anammox reactor | Q27335764 | ||
| A network-based approach to disturbance transmission through microbial interactions | Q28084823 | ||
| The Competitive Exclusion Principle | Q28202954 | ||
| Microbial ecology meets electrochemistry: electricity-driven and driving communities | Q28258949 | ||
| Experimental demonstration of chaos in a microbial food web | Q28259158 | ||
| Catellibacterium nectariphilum gen. nov., sp. nov., which requires a diffusible compound from a strain related to the genus Sphingomonas for vigorous growth | Q28261712 | ||
| Contact-dependent inhibition of growth in Escherichia coli | Q28268010 | ||
| Community flux balance analysis for microbial consortia at balanced growth | Q28533513 | ||
| The Black Queen Hypothesis: evolution of dependencies through adaptive gene loss | Q28730844 | ||
| Metabolic network modeling of microbial communities | Q30279122 | ||
| Linking biodiversity and ecosystems: towards a unifying ecological theory | Q30397017 | ||
| 3D printing of microscopic bacterial communities | Q30557408 | ||
| Symbiobacterium thermophilum gen. nov., sp. nov., a symbiotic thermophile that depends on co-culture with a Bacillus strain for growth | Q30617277 | ||
| Fluorescence in situ hybridization using 16S rRNA-targeted oligonucleotides reveals localization of methanogens and selected uncultured bacteria in mesophilic and thermophilic sludge granules. | Q30650178 | ||
| Microbial herd protection mediated by antagonistic interaction in polymicrobial communities | Q30828145 | ||
| Microbial diversity and function in soil: from genes to ecosystems | Q31073757 | ||
| Local dispersal promotes biodiversity in a real-life game of rock-paper-scissors | Q31096211 | ||
| Microbial Community Metabolic Modeling: A Community Data-Driven Network Reconstruction | Q31096629 | ||
| A natural view of microbial biodiversity within hot spring cyanobacterial mat communities | Q31961145 | ||
| The contribution of species richness and composition to bacterial services | Q33222231 | ||
| The unseen majority: soil microbes as drivers of plant diversity and productivity in terrestrial ecosystems | Q33307777 | ||
| Initial community evenness favours functionality under selective stress | Q33415981 | ||
| Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources? | Q33417905 | ||
| In silico approaches to study mass and energy flows in microbial consortia: a syntrophic case study. | Q33517877 | ||
| A mechanistic basis for underyielding in phytoplankton communities | Q33551273 | ||
| Syntrophic exchange in synthetic microbial communities | Q33665680 | ||
| Rapid evolution of stability and productivity at the origin of a microbial mutualism | Q33719701 | ||
| Experimental niche evolution alters the strength of the diversity–productivity relationship | Q33763362 | ||
| Rediscovery of the microbial world in microbial ecology | Q33806713 | ||
| Molecular ecological network analysis reveals the effects of probiotics and florfenicol on intestinal microbiota homeostasis: An example of sea cucumber | Q33881009 | ||
| Are uncultivated bacteria really uncultivable? | Q33920286 | ||
| Bacterial dormancy and culturability: the role of autocrine growth factors | Q33941499 | ||
| Rapid evolution drives ecological dynamics in a predator-prey system | Q33967222 | ||
| Metabolome profiling reveals metabolic cooperation between Bacillus megaterium and Ketogulonicigenium vulgare during induced swarm motility | Q33976313 | ||
| Eco-evolutionary feedbacks in community and ecosystem ecology: interactions between the ecological theatre and the evolutionary play | Q34017366 | ||
| Type VI secretion: not just for pathogenesis anymore | Q34034395 | ||
| Isolation and initial characterization of a bacterial consortium able to mineralize fluorobenzene | Q34097360 | ||
| OptCom: a multi-level optimization framework for the metabolic modeling and analysis of microbial communities | Q34154442 | ||
| Ecosystems biology of microbial metabolism | Q34185936 | ||
| Diversity of interaction types and ecological community stability | Q34289711 | ||
| Engineering ecosystems and synthetic ecologies | Q34313206 | ||
| Contribution of transcriptomics to systems-level understanding of methanogenic Archaea | Q34335514 | ||
| Bioaugmentation as a soil bioremediation approach | Q34395055 | ||
| Assembly of complex plant-fungus networks. | Q34446533 | ||
| Simplified and representative bacterial community of maize roots | Q34552972 | ||
| Cooperative catabolic pathways within an atrazine-degrading enrichment culture isolated from soil | Q34563076 | ||
| Experimental coevolution of species interactions | Q34633092 | ||
| Bacteria-phage coevolution as a driver of ecological and evolutionary processes in microbial communities | Q34637653 | ||
| Evolutionary limits to cooperation in microbial communities | Q34752307 | ||
| Interactions in the microbiome: communities of organisms and communities of genes | Q34889744 | ||
| Co-culture-inducible bacteriocin production in lactic acid bacteria | Q38796160 | ||
| All together now: experimental multispecies biofilm model systems | Q39017878 | ||
| Applying the design-build-test paradigm in microbiome engineering. | Q39248793 | ||
| Tit-for-tat: type VI secretion system counterattack during bacterial cell-cell interactions | Q39585454 | ||
| Coexistence of antibiotic-producing and antibiotic-sensitive bacteria in biofilms is mediated by resistant bacteria | Q39753681 | ||
| Stable coexistence of five bacterial strains as a cellulose-degrading community. | Q39801042 | ||
| Model-based media selection to minimize the cost of metabolic cooperation in microbial ecosystems | Q40034903 | ||
| Co-evolution with Staphylococcus aureus leads to lipopolysaccharide alterations in Pseudomonas aeruginosa | Q40197439 | ||
| The culturome of the human nose habitats reveals individual bacterial fingerprint patterns. | Q41000054 | ||
| Microbial diversity arising from thermodynamic constraints | Q41228436 | ||
| Siderophore cheating and cheating resistance shape competition for iron in soil and freshwater Pseudomonas communities. | Q41606254 | ||
| Beyond the Black Queen Hypothesis | Q41688854 | ||
| An ecological network of polysaccharide utilization among human intestinal symbionts | Q41955485 | ||
| Editorial: Development of Microbial Ecological Theory: Stability, Plasticity, and Evolution of Microbial Ecosystems. | Q42345827 | ||
| Controlling the Microbiome: Microhabitat Adjustments for Successful Biocontrol Strategies in Soil and Human Gut. | Q42424691 | ||
| Substrate-dependent transcriptomic shifts in Pelotomaculum thermopropionicum grown in syntrophic co-culture with Methanothermobacter thermautotrophicus | Q42755794 | ||
| Predation by Myxococcus xanthus induces Bacillus subtilis to form spore-filled megastructures | Q43074434 | ||
| Novel cooperation experimentally evolved between species | Q43184570 | ||
| Impacts of biostimulation and bioaugmentation on the performance and microbial ecology in methanogenic reactors treating purified terephthalic acid wastewater | Q43363370 | ||
| Phylogenetic distance and species richness interactively affect the productivity of bacterial communities | Q45834996 | ||
| Successful enrichment of the ubiquitous freshwater acI Actinobacteria | Q45838671 | ||
| Biodiversity effects in the wild are common and as strong as key drivers of productivity | Q46312398 | ||
| Comparative Metabolomic Analysis of the Green Microalga Chlorella sorokiniana Cultivated in the Single Culture and a Consortium with Bacteria for Wastewater Remediation | Q46366601 | ||
| A flexible microbial co-culture platform for simultaneous utilization of methane and carbon dioxide from gas feedstocks | Q46431993 | ||
| A conceptual framework for invasion in microbial communities | Q46554643 | ||
| Secreted protease mediates interspecies interaction and promotes cell aggregation of the photosynthetic bacterium Chloroflexus aggregans. | Q46773962 | ||
| Network relationships of bacteria in a stable mixed culture. | Q46807614 | ||
| Letting go: bacterial genome reduction solves the dilemma of adapting to predation mortality in a substrate-restricted environment | Q47316419 | ||
| Quantitative proteomics of a B12 -dependent alga grown in coculture with bacteria reveals metabolic tradeoffs required for mutualism. | Q47442094 | ||
| Characterization of a microbial consortium capable of degrading lignocellulose | Q48056481 | ||
| Diversity of a stable enrichment culture which is useful for silage inoculant and its succession in alfalfa silage | Q48086307 | ||
| Autoinducer 2-dependent Escherichia coli biofilm formation is enhanced in a dual-species co-culture | Q50230766 | ||
| Saturating effects of species diversity on life-history evolution in bacteria. | Q51333882 | ||
| Private benefits and metabolic conflicts shape the emergence of microbial interdependencies. | Q51339157 | ||
| Metabolic activity and symbiotic interactions of lactic acid bacteria and yeasts isolated from water kefir. | Q51530679 | ||
| Competition, Not Cooperation, Dominates Interactions among Culturable Microbial Species | Q57197359 | ||
| Artificial selection of microbial ecosystems for 3-chloroaniline biodegradation | Q73573953 | ||
| Construction of a stable microbial community with high cellulose-degradation ability | Q74598723 | ||
| Mechanisms linking diversity, productivity and invasibility in experimental bacterial communities | Q78503187 | ||
| Streptococcus oligofermentans inhibits Streptococcus mutans through conversion of lactic acid into inhibitory H2O2: a possible counteroffensive strategy for interspecies competition | Q79780197 | ||
| Effect of adding cellulolytic bacterium on stable cellulose-degrading microbial community | Q80215960 | ||
| Interspecies signalling via the Stenotrophomonas maltophilia diffusible signal factor influences biofilm formation and polymyxin tolerance in Pseudomonas aeruginosa | Q80801714 | ||
| Effective cellulose degradation by a mixed-culture system composed of a cellulolytic Clostridium and aerobic non-cellulolytic bacteria | Q81578152 | ||
| Global transcriptomics analysis of the Desulfovibrio vulgaris change from syntrophic growth with Methanosarcina barkeri to sulfidogenic metabolism | Q84473412 | ||
| Community structure follows simple assembly rules in microbial microcosms | Q88785657 | ||
| Design and characterization of synthetic fungal-bacterial consortia for direct production of isobutanol from cellulosic biomass | Q34957476 | ||
| A novel production process for optically pure L-lactic acid from kitchen refuse using a bacterial consortium at high temperatures | Q34974521 | ||
| Synthetic microbial ecosystems for biotechnology | Q35101023 | ||
| Artificial ecosystem selection | Q35196499 | ||
| Dynamic flux balance analysis for synthetic microbial communities. | Q35278077 | ||
| Distributing a metabolic pathway among a microbial consortium enhances production of natural products | Q35537845 | ||
| Guiding bioprocess design by microbial ecology | Q35592957 | ||
| Metabolic dependencies drive species co-occurrence in diverse microbial communities | Q35622200 | ||
| Synthetic ecology: a model system for cooperation | Q35629336 | ||
| ECOLOGY. Ecological communities by design | Q35675121 | ||
| PLANT MICROBIOME. Salicylic acid modulates colonization of the root microbiome by specific bacterial taxa | Q35694155 | ||
| Better together: engineering and application of microbial symbioses | Q35759730 | ||
| Dynamics in microbial communities: unraveling mechanisms to identify principles | Q35774483 | ||
| Artificial selection of simulated microbial ecosystems | Q35829114 | ||
| Predicting a human gut microbiota's response to diet in gnotobiotic mice | Q35829905 | ||
| Antibiotic perturbation of the murine gut microbiome enhances the adiposity, insulin resistance, and liver disease associated with high-fat diet | Q36002185 | ||
| Bioengineering microbial communities: Their potential to help, hinder and disgust. | Q36028575 | ||
| Generation of genome-scale metabolic reconstructions for 773 members of the human gut microbiota. | Q36205362 | ||
| Networks of energetic and metabolic interactions define dynamics in microbial communities | Q36394231 | ||
| Implications of streamlining theory for microbial ecology | Q36756338 | ||
| Defined spatial structure stabilizes a synthetic multispecies bacterial community | Q36984976 | ||
| Hydrogen peroxide-mediated interference competition by Streptococcus pneumoniae has no significant effect on Staphylococcus aureus nasal colonization of neonatal rats | Q37051375 | ||
| Availability of public goods shapes the evolution of competing metabolic strategies | Q37143418 | ||
| Effects of Bacterial Community Members on the Proteome of the Ammonia-Oxidizing Bacterium Nitrosomonas sp. Strain Is79 | Q37173622 | ||
| Engineering microbial consortia for controllable outputs | Q37185202 | ||
| Inference of interactions in cyanobacterial-heterotrophic co-cultures via transcriptome sequencing | Q37191678 | ||
| MMinte: an application for predicting metabolic interactions among the microbial species in a community. | Q37228280 | ||
| Intertwined interspecies relationships: approaches to untangle the microbial network. | Q37512397 | ||
| Synthetic photosynthetic consortia define interactions leading to robustness and photoproduction | Q37602357 | ||
| Microbial Consortia Engineering for Cellular Factories: in vitro to in silico systems | Q37655107 | ||
| Indirect Interspecies Regulation: Transcriptional and Physiological Responses of a Cyanobacterium to Heterotrophic Partnership | Q37685572 | ||
| Dynamics in the mixed microbial concourse | Q37814778 | ||
| Bacteria-virus coevolution. | Q38028405 | ||
| Genome-based Modeling and Design of Metabolic Interactions in Microbial Communities | Q38201029 | ||
| P433 | issue | 8 | |
| P304 | page(s) | 723-733 | |
| P577 | publication date | 2018-12-01 | |
| P1433 | published in | Current Genomics | Q5195047 |
| P1476 | title | Model Microbial Consortia as Tools for Understanding Complex Microbial Communities | |
| P478 | volume | 19 |
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