Inference of interactions in cyanobacterial-heterotrophic co-cultures via transcriptome sequencing

scientific article published on 29 April 2014

Inference of interactions in cyanobacterial-heterotrophic co-cultures via transcriptome sequencing is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1038/ISMEJ.2014.69
P932PMC publication ID4992078
P698PubMed publication ID24781900
P5875ResearchGate publication ID261997749

P50authorMargaret F RomineQ30504979
Jim K FredricksonQ89446807
Alex S BeliaevQ116774432
Allan E KonopkaQ121409792
William B ChrislerQ121409809
Grigoriy E PinchukQ121409843
Leo A KucekQ121409870
Hans C BernsteinQ56965779
Steven WileyQ58328092
P2093author name stringDonald A Bryant
Lye M Markillie
Nancy G Isern
Eric A Hill
Bryan E Linggi
Margrethe Serres
P2860cites workThe RIN: an RNA integrity number for assigning integrity values to RNA measurementsQ21263010
Mapping and quantifying mammalian transcriptomes by RNA-SeqQ22122035
Pathway Tools version 13.0: integrated software for pathway/genome informatics and systems biologyQ24642068
The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databasesQ28253558
Taxonomy of four marine bacterial strains that produce tetrodotoxinQ28270210
RegPrecise web services interface: programmatic access to the transcriptional regulatory interactions in bacteria reconstructed by comparative genomicsQ28727282
Generic Assignments, Strain Histories and Properties of Pure Cultures of CyanobacteriaQ29304913
A Zoogloea sp. associated with blooms of Anabaena flos-aquaeQ31919231
Links between bacterial production, amino-acid utilization and community composition in productive lakesQ33307512
Genomic encyclopedia of sugar utilization pathways in the Shewanella genusQ33691003
Comparative analysis of differentially expressed genes in Shewanella oneidensis MR-1 following exposure to UVC, UVB, and UVA radiationQ33788373
Dissimilatory reduction of Fe(III) and other electron acceptors by a Thermus isolateQ33984456
Global transcriptome analysis of Shewanella oneidensis MR-1 exposed to different terminal electron acceptorsQ33990431
Expression-based identification of genetic determinants of the bacterial symbiosis 'Chlorochromatium aggregatum'.Q34038474
Isolation and Identification of an Epibiotic Bacterium Associated with Heterocystous Anabaena CellsQ59939911
Chemotactic response of marine bacteria to the extracellular products of Synechococcus and ProchlorococcusQ60489151
Role of chemotaxis in establishing a specific nitrogen-fixing cyanobacterial-bacterial associationQ81027407
Finding gene-expression patterns in bacterial biofilmsQ81245206
Symbiosis between non-related bacteria in phototrophic consortiaQ83173602
Growth of the cyanobacterium Synechococcus leopoliensis CCAP1405/1 on agar media in the presence of heterotrophic bacteriaQ83898019
Polymorphic toxin systems: Comprehensive characterization of trafficking modes, processing, mechanisms of action, immunity and ecology using comparative genomicsQ34283923
Two routes of metabolic cross-feeding between Bifidobacterium adolescentis and butyrate-producing anaerobes from the human gut.Q34649832
Transcription Profiling of the Model Cyanobacterium Synechococcus sp. Strain PCC 7002 by Next-Gen (SOLiD™) Sequencing of cDNAQ35097459
Response of Prochlorococcus ecotypes to co-culture with diverse marine bacteriaQ35135828
Large-scale comparative phenotypic and genomic analyses reveal ecological preferences of shewanella species and identify metabolic pathways conserved at the genus levelQ35139019
Diversity and association of psychrophilic bacteria in Antarctic sea ice.Q35203748
Iron utilization in marine cyanobacteria and eukaryotic algaeQ35810088
Acclimation of the Global Transcriptome of the Cyanobacterium Synechococcus sp. Strain PCC 7002 to Nutrient Limitations and Different Nitrogen SourcesQ35882123
Bacterial iron sources: from siderophores to hemophoresQ35919884
Interactions between diatoms and bacteriaQ36194934
Transformation in Agmenellum quadruplicatumQ36411468
Utilization of DNA as a sole source of phosphorus, carbon, and energy by Shewanella spp.: ecological and physiological implications for dissimilatory metal reductionQ36482950
Facilitation of robust growth of Prochlorococcus colonies and dilute liquid cultures by "helper" heterotrophic bacteria.Q36804117
Global analysis of nutrient control of gene expression in Saccharomyces cerevisiae during growth and starvation.Q36854246
Organization and evolution of the biological response to singlet oxygen stressQ36964081
Genomic reconstruction of Shewanella oneidensis MR-1 metabolism reveals a previously uncharacterized machinery for lactate utilizationQ37085738
Photolysis of iron-siderophore chelates promotes bacterial-algal mutualismQ37385959
The renaissance of continuous culture in the post-genomics ageQ37787855
Dynamics in the mixed microbial concourseQ37814778
Improved detection of overrepresentation of Gene-Ontology annotations with parent child analysisQ38515564
The Staphylococcus aureus lrgAB operon modulates murein hydrolase activity and penicillin toleranceQ39538529
Photoheterotrophic growth of Agmenellum quadruplicatum PR-6.Q39964892
A Mini-review of Microbial Consortia: Their Roles in Aquatic Production and Biogeochemical CyclingQ41004476
Chlamydomonas reinhardtii thermal tolerance enhancement mediated by a mutualistic interaction with vitamin B12-producing bacteriaQ41880808
The Effects of Methylglyoxal on Glutathione S-Transferase from Nicotiana tabacumQ42859737
Whole-genome microarray analyses of Synechococcus-Vibrio interactionsQ44791356
A road map for the development of community systems (CoSy) biologyQ46534952
Global gene expression in Escherichia coli biofilmsQ46766802
Widespread production of extracellular superoxide by heterotrophic bacteriaQ48039566
Mutualistic interactions between vitamin B12 -dependent algae and heterotrophic bacteria exhibit regulation.Q50499828
Growth responses of blue-green algae to sodium chloride concentrationQ50971600
Inter-specific interactions between carbon-limited soil bacteria affect behavior and gene expression.Q51666055
Oxygen-dependent autoaggregation in Shewanella oneidensis MR-1.Q53484066
How do non-differentiating bacteria adapt to starvation?Q54253442
Growth and release of extracellular organic compounds by benthic diatoms depend on interactions with bacteria.Q54371919
Interactions Between Bacteria and Algae in Aquatic EcosystemsQ59446839
P433issue11
P921main subjectCyanobacteriaQ93315
transcriptomeQ252857
P304page(s)2243-2255
P577publication date2014-04-29
P1433published inThe ISME JournalQ7741240
P1476titleInference of interactions in cyanobacterial-heterotrophic co-cultures via transcriptome sequencing
P478volume8

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cites work (P2860)
Q28828386A novel uncultured heterotrophic bacterial associate of the cyanobacterium Moorea producens JHB
Q28072941Biotic Interactions in Microbial Communities as Modulators of Biogeochemical Processes: Methanotrophy as a Model System
Q36321087Combining ANOVA-PCA with POCHEMON to analyse micro-organism development in a polymicrobial environment
Q35635491Consortium of the 'bichlorophyllous' cyanobacterium Prochlorothrix hollandica and chemoheterotrophic partner bacteria: culture and metagenome-based description
Q94545692Construction and analysis of an artificial consortium based on the fast-growing cyanobacterium Synechococcus elongatus UTEX 2973 to produce the platform chemical 3-hydroxypropionic acid from CO2
Q48095758Degradation of hydrogen peroxide at the ocean's surface: the influence of the microbial community on the realized thermal niche of Prochlorococcus.
Q27326174Development of a Laboratory Model of a Phototroph-Heterotroph Mixed-Species Biofilm at the Stone/Air Interface
Q64904134Disentangling strictly self-serving mutations from win-win mutations in a mutualistic microbial community.
Q37185202Engineering microbial consortia for controllable outputs
Q38650643Genomic Reconstruction of Carbohydrate Utilization Capacities in Microbial-Mat Derived Consortia.
Q55004823Heterotroph Interactions Alter Prochlorococcus Transcriptome Dynamics during Extended Periods of Darkness.
Q37685572Indirect Interspecies Regulation: Transcriptional and Physiological Responses of a Cyanobacterium to Heterotrophic Partnership
Q35845501Integrated in silico Analyses of Regulatory and Metabolic Networks of Synechococcus sp. PCC 7002 Reveal Relationships between Gene Centrality and Essentiality
Q37712870Interactions of Freshwater Cyanobacteria with Bacterial Antagonists
Q89766943Metagenomic and Metaproteomic Insights into Photoautotrophic and Heterotrophic Interactions in a Synechococcus Culture
Q37713637Mimicking lichens: incorporation of yeast strains together with sucrose-secreting cyanobacteria improves survival, growth, ROS removal, and lipid production in a stable mutualistic co-culture production platform
Q90376461Model Microbial Consortia as Tools for Understanding Complex Microbial Communities
Q47566798Molecular processes underlying synergistic linuron mineralization in a triple-species bacterial consortium biofilm revealed by differential transcriptomics
Q36242059Multi-Omic Dynamics Associate Oxygenic Photosynthesis with Nitrogenase-Mediated H2 Production in Cyanothece sp. ATCC 51142
Q37336978Network analysis of transcriptomics expands regulatory landscapes in Synechococcus sp. PCC 7002.
Q47986517Nutrient recycling facilitates long-term stability of marine microbial phototroph-heterotroph interactions
Q48267604Phenotypic responses to interspecies competition and commensalism in a naturally-derived microbial co-culture
Q40000888Quantifying element incorporation in multispecies biofilms using nanoscale secondary ion mass spectrometry image analysis.
Q37247454Quantitative high-throughput population dynamics in continuous-culture by automated microscopy
Q47442094Quantitative proteomics of a B12 -dependent alga grown in coculture with bacteria reveals metabolic tradeoffs required for mutualism.
Q59941686Species-specific transcriptomic network inference of interspecies interactions
Q21994473Sustainable life support on Mars – the potential roles of cyanobacteria
Q37602357Synthetic photosynthetic consortia define interactions leading to robustness and photoproduction
Q90232111The Ecology of Subaerial Biofilms in Dry and Inhospitable Terrestrial Environments
Q46377149The Trichodesmium consortium: conserved heterotrophic co-occurrence and genomic signatures of potential interactions.
Q98952093The initial inoculation ratio regulates bacterial coculture interactions and metabolic capacity
Q35793316The molecular dimension of microbial species: 2. Synechococcus strains representative of putative ecotypes inhabiting different depths in the Mushroom Spring microbial mat exhibit different adaptive and acclimative responses to light
Q46538029Torn apart and reunited: impact of a heterotroph on the transcriptome of Prochlorococcus
Q50319958Transcriptional response of Prochlorococcus to co-culture with a marine Alteromonas: differences between strains and the involvement of putative infochemicals
Q37173688Transcriptomic Responses of the Interactions between Clostridium cellulovorans 743B and Rhodopseudomonas palustris CGA009 in a Cellulose-Grown Coculture for Enhanced Hydrogen Production
Q62085463Uncovering and resolving challenges of quantitative modeling in a simplified community of interacting cells
Q37168690Unlocking the Constraints of Cyanobacterial Productivity: Acclimations Enabling Ultrafast Growth

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