| scholarly article | Q13442814 |
| P2093 | author name string | Radhakrishnan Mahadevan | |
| Michael A Henson | |||
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| Environments that induce synthetic microbial ecosystems | Q21563487 | ||
| The Escherichia coli MG1655 in silico metabolic genotype: its definition, characteristics, and capabilities | Q24655269 | ||
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| Escherichia coli K-12 undergoes adaptive evolution to achieve in silico predicted optimal growth | Q29397612 | ||
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| Metagenomic and functional analysis of hindgut microbiota of a wood-feeding higher termite | Q29618893 | ||
| Predicted Relative Metabolomic Turnover (PRMT): determining metabolic turnover from a coastal marine metagenomic dataset | Q30514004 | ||
| High-throughput methods for culturing microorganisms in very-low-nutrient media yield diverse new marine isolates | Q30839805 | ||
| Genome-scale analysis of Saccharomyces cerevisiae metabolism and ethanol production in fed-batch culture | Q33270036 | ||
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| Prediction of metabolic function from limited data: Lumped hybrid cybernetic modeling (L-HCM). | Q33530655 | ||
| Integrated metatranscriptomic and metagenomic analyses of stratified microbial assemblages in the open ocean | Q33768696 | ||
| Ecological distribution and population physiology defined by proteomics in a natural microbial community. | Q34033615 | ||
| A computational exploration of bacterial metabolic diversity identifying metabolic interactions and growth-efficient strain communities | Q34050854 | ||
| OptCom: a multi-level optimization framework for the metabolic modeling and analysis of microbial communities | Q34154442 | ||
| Dynamic flux balance analysis of diauxic growth in Escherichia coli | Q34178626 | ||
| Metagenomic systems biology of the human gut microbiome reveals topological shifts associated with obesity and inflammatory bowel disease | Q34241773 | ||
| Metaproteomics of a gutless marine worm and its symbiotic microbial community reveal unusual pathways for carbon and energy use. | Q34269609 | ||
| Microbial interactions: from networks to models | Q34337828 | ||
| Comparative metagenomics of three Dehalococcoides-containing enrichment cultures: the role of the non-dechlorinating community | Q34347988 | ||
| Complex function by design using spatially pre-structured synthetic microbial communities: degradation of pentachlorophenol in the presence of Hg(ii). | Q34420446 | ||
| Symbiosis insights through metagenomic analysis of a microbial consortium | Q34566687 | ||
| Metagenomic analysis of two enhanced biological phosphorus removal (EBPR) sludge communities | Q34568547 | ||
| Synthetic cooperation in engineered yeast populations | Q35629292 | ||
| Metabolic modeling of a mutualistic microbial community. | Q35742362 | ||
| Game-theoretical approaches to studying the evolution of biochemical systems | Q36011038 | ||
| Community proteogenomics reveals insights into the physiology of phyllosphere bacteria | Q37334763 | ||
| Systems biology: Functional analysis of natural microbial consortia using community proteomics | Q37393761 | ||
| Metabolic reconstruction, constraint-based analysis and game theory to probe genome-scale metabolic networks | Q37778623 | ||
| In situ to in silico and back: elucidating the physiology and ecology of Geobacter spp. using genome-scale modelling | Q37816217 | ||
| Systems metabolic engineering of microorganisms for natural and non-natural chemicals | Q38010996 | ||
| Computational tools for metabolic engineering. | Q38013124 | ||
| Competitive and cooperative metabolic interactions in bacterial communities. | Q39676882 | ||
| A co-fermentation strategy to consume sugar mixtures effectively | Q41984093 | ||
| Emergent cooperation in microbial metabolism | Q42397954 | ||
| Genome-scale dynamic modeling of the competition between Rhodoferax and Geobacter in anoxic subsurface environments | Q42743118 | ||
| Genome‐scale metabolic modeling of a clostridial co‐culture for consolidated bioprocessing | Q42954180 | ||
| Multidimensional optimality of microbial metabolism | Q43431493 | ||
| Cooperation and competition in the evolution of ATP-producing pathways | Q43562868 | ||
| Integrating metabolic, transcriptional regulatory and signal transduction models in Escherichia coli. | Q43575020 | ||
| Dynamic flux balance modeling of S. cerevisiae and E. coli co-cultures for efficient consumption of glucose/xylose mixtures | Q45361820 | ||
| Metabolic gene-deletion strains of Escherichia coli evolve to computationally predicted growth phenotypes | Q46791266 | ||
| Large-scale evaluation of in silico gene deletions in Saccharomyces cerevisiae | Q47609184 | ||
| A cybernetic view of microbial growth: modeling of cells as optimal strategists | Q47871803 | ||
| The design of long-term effective uranium bioremediation strategy using a community metabolic model | Q47891637 | ||
| Sorting out metagenomes. | Q50781513 | ||
| Optimization of fed-batch Saccharomyces cerevisiae fermentation using dynamic flux balance models. | Q51123815 | ||
| Evolutionary trade-offs, Pareto optimality, and the geometry of phenotype space. | Q54337677 | ||
| Dynamic flux balance modeling of microbial co-cultures for efficient batch fermentation of glucose and xylose mixtures. | Q54378421 | ||
| Simple constrained-optimization view of acetate overflow in E. coli. | Q54715790 | ||
| Computer model for glucose-limited growth of a single cell of Escherichia coli B/r-A | Q81450322 | ||
| P407 | language of work or name | English | Q1860 |
| P304 | page(s) | e201210008 | |
| P577 | publication date | 2012-11-12 | |
| P1433 | published in | Computational and Structural Biotechnology Journal | Q19865804 |
| P1476 | title | Genome-based Modeling and Design of Metabolic Interactions in Microbial Communities | |
| P478 | volume | 3 |
| Q43115466 | A multi-tissue genome-scale metabolic modeling framework for the analysis of whole plant systems |
| Q38266034 | Computational approaches to metabolic engineering utilizing systems biology and synthetic biology |
| Q26767203 | Constraint Based Modeling Going Multicellular |
| Q39196318 | Constraint-based stoichiometric modelling from single organisms to microbial communities. |
| Q91782230 | Finding Functional Differences Between Species in a Microbial Community: Case Studies in Wine Fermentation and Kefir Culture |
| Q26799830 | Metabolic interactions in microbial communities: untangling the Gordian knot |
| Q90376461 | Model Microbial Consortia as Tools for Understanding Complex Microbial Communities |
| Q26775582 | Synthetic biology for pharmaceutical drug discovery |
| Q58699042 | The Cost of Metabolic Interactions in Symbioses between Insects and Bacteria with Reduced Genomes |
| Q92890526 | The Human Gut Microbiome is Structured to Optimize Molecular Interaction Networks |
| Q37334916 | Transitioning from Microbiome Composition to Microbial Community Interactions: The Potential of the Metaorganism Hydra as an Experimental Model |
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