Competitive and cooperative metabolic interactions in bacterial communities.

scientific article published on 13 December 2011

Competitive and cooperative metabolic interactions in bacterial communities. is …
instance of (P31):
scholarly articleQ13442814

External links are
P819ADS bibcode2011NatCo...2..589F
P356DOI10.1038/NCOMMS1597
P698PubMed publication ID22158444
P5875ResearchGate publication ID51868424

P50authorUri GophnaQ42641776
Eytan RuppinQ83763065
Shiri FreilichQ83769411
Roded SharanQ83769950
P2093author name stringMartin Kupiec
Christopher S Henry
Raphy Zarecki
Ella Shtifman Segal
Omer Eilam
P2860cites workEnvironments that induce synthetic microbial ecosystemsQ21563487
Fitness and its role in evolutionary geneticsQ22122004
Gapped BLAST and PSI-BLAST: a new generation of protein database search programsQ24545170
KEGG: Kyoto Encyclopedia of Genes and GenomesQ24548371
Microbial ecology: human gut microbes associated with obesityQ27861004
High-throughput generation, optimization and analysis of genome-scale metabolic modelsQ28291992
Decoupling Environment-Dependent and Independent Genetic Robustness across Bacterial SpeciesQ28473043
The contribution of species richness and composition to bacterial servicesQ33222231
Positive interactions among competitors can produce species-rich communitiesQ33335282
A global network of coexisting microbes from environmental and whole-genome sequence dataQ33574443
Ecosystems biology of microbial metabolismQ34185936
Effects of the inoculant strain Pseudomonas putida KT2442 (pNF142) and of naphthalene contamination on the soil bacterial communityQ34473112
Synergistic interactions in the microbial worldQ35007709
Functional classification of genome-scale metabolic networksQ35209069
Metabolic modeling of a mutualistic microbial community.Q35742362
Bacterial iron sources: from siderophores to hemophoresQ35919884
Defining genetic interactionQ36491179
Metabolic-network-driven analysis of bacterial ecological strategiesQ37282861
Microbial community structure and its functional implicationsQ37483457
Bacterial competition: surviving and thriving in the microbial jungleQ37641019
Dynamics in the mixed microbial concourseQ37814778
Habitat-Lite: a GSC case study based on free text terms for environmental metadataQ38514043
Sulfate-reducing bacteria-dominated biofilms that precipitate ZnS in a subsurface circumneutral-pH mine drainage system.Q39219047
Stable coexistence of five bacterial strains as a cellulose-degrading community.Q39801042
Stoichiometric constraints on resource use, competitive interactions, and elemental cycling in microbial decomposersQ40216311
Emergent cooperation in microbial metabolismQ42397954
Dihydroxyacetone metabolism in Salinibacter ruber and in Haloquadratum walsbyiQ43023455
Species packing and competitive equilibrium for many speciesQ43691751
Examination of the "null" model of connor and simberloff for species co-occurrences on IslandsQ46273017
Evolution of species interactions in a biofilm communityQ59055799
Evolution of cooperation between individualsQ59056882
The Assembly of Species Communities: Chance or Competition?Q60164419
The present status of the competitive exclusion principleQ83178255
Microbiology. Getting in touch with your friendsQ83940678
P407language of work or nameEnglishQ1860
P921main subjectbacterial communityQ129982151
P304page(s)589
P577publication date2011-12-13
P1433published inNature CommunicationsQ573880
P1476titleCompetitive and cooperative metabolic interactions in bacterial communities
P478volume2

Reverse relations

cites work (P2860)
Q58699080A multi-source domain annotation pipeline for quantitative metagenomic and metatranscriptomic functional profiling
Q33916096A novel nutritional predictor links microbial fastidiousness with lowered ubiquity, growth rate, and cooperativeness
Q46534952A road map for the development of community systems (CoSy) biology
Q57803669A shared coevolutionary history does not alter the outcome of coalescence in experimental populations of Pseudomonas fluorescens
Q92787893An expectation-maximization algorithm enables accurate ecological modeling using longitudinal microbiome sequencing data
Q41526232Analysis of Microbial Functions in the Rhizosphere Using a Metabolic-Network Based Framework for Metagenomics Interpretation
Q35595024Anoxic Conditions Promote Species-Specific Mutualism between Gut Microbes In Silico
Q47922192Antagonistic interactions of soil pseudomonads are structured in time
Q58108379Antibiotics as both friends and foes of the human gut microbiome: The microbial community approach
Q40252403Autonomous Pattern Formation of Micro-organic Cell Density with Optical Interlink between Two Isolated Culture Dishes
Q35693109Auxotrophy and intrapopulation complementary in the 'interactome' of a cultivated freshwater model community.
Q35486691Bacteria dialog with Santa Rosalia: Are aggregations of cosmopolitan bacteria mainly explained by habitat filtering or by ecological interactions?
Q26739810Bacterial Communities: Interactions to Scale
Q58841407Bacterial diversity amplifies nutrient-based plant-soil feedbacks
Q51245452Bacteriocins and the assembly of natural Pseudomonas fluorescens populations.
Q35202511Biodiversity and species identity shape the antifungal activity of bacterial communities
Q35810400Calibration and analysis of genome-based models for microbial ecology
Q46367019Carbon utilization profiles of river bacterial strains facing sole carbon sources suggest metabolic interactions
Q38376483Challenges in microbial ecology: building predictive understanding of community function and dynamics
Q57987673Changes in the genetic requirements for microbial interactions with increasing community complexity
Q36875170Co-occurrence Analysis of Microbial Taxa in the Atlantic Ocean Reveals High Connectivity in the Free-Living Bacterioplankton
Q99631864Coaggregation properties of trimeric autotransporter adhesins
Q34714359Colonization resistance and microbial ecophysiology: using gnotobiotic mouse models and single-cell technology to explore the intestinal jungle.
Q64266798Competitive interaction with keystone taxa induced negative priming under biochar amendments
Q57810831Competitive lottery-based assembly of selected clades in the human gut microbiome
Q27322400Complete ecological isolation and cryptic diversity in Polynucleobacter bacteria not resolved by 16S rRNA gene sequences
Q28551270Consistency Analysis of Genome-Scale Models of Bacterial Metabolism: A Metamodel Approach
Q39196318Constraint-based stoichiometric modelling from single organisms to microbial communities.
Q41367545Control of multidimensional systems on complex network
Q88216257Convergent engineering of syntrophic Escherichia coli coculture for efficient production of glycosides
Q56537156Core microbiomes for sustainable agroecosystems
Q56900002Crystal ball - 2013
Q38222613Current understanding of the formation and adaptation of metabolic systems based on network theory
Q28584876Deciphering a survival strategy during the interspecific competition between Bacillus cereus MSM-S1 and Pseudomonas sp. MSM-M1
Q92913757Deciphering links between bacterial interactions and spatial organization in multispecies biofilms
Q39923601Deciphering microbial interactions and detecting keystone species with co-occurrence networks
Q64064531Designing Metabolic Division of Labor in Microbial Communities
Q92157099Driving factors of epiphytic bacterial communities: A review
Q92024492Droplet Tn-Seq combines microfluidics with Tn-Seq for identifying complex single-cell phenotypes
Q89517462Ecological drivers of bacterial community assembly in synthetic phycospheres
Q35124389Ecological perspectives on synthetic biology: insights from microbial population biology.
Q33999859Effect of incubation on bacterial communities of eggshells in a temperate bird, the Eurasian Magpie (Pica pica)
Q47355387Electron shuttling to ferrihydrite selects for fermentative rather than Fe3+ -reducing biomass in xylose-fed batch reactors derived from three different inoculum sources
Q37725583Elucidating the interactions between the human gut microbiota and its host through metabolic modeling
Q45017953Elucidation of complexity and prediction of interactions in microbial communities
Q35200847Emergent biosynthetic capacity in simple microbial communities
Q92601422Engineered Interspecies Amino Acid Cross-Feeding Increases Population Evenness in a Synthetic Bacterial Consortium
Q35734537Experimental evidence for strong stabilizing forces at high functional diversity of aquatic microbial communities
Q92962734Exploring the effects of operational mode and microbial interactions on bacterial community assembly in a one-stage partial-nitritation anammox reactor using integrated multi-omics
Q45071318Family-wide Structural Characterization and Genomic Comparisons Decode the Diversity-oriented Biosynthesis of Thalassospiramides by Marine Proteobacteria.
Q56887734Fast automated reconstruction of genome-scale metabolic models for microbial species and communities
Q91782230Finding Functional Differences Between Species in a Microbial Community: Case Studies in Wine Fermentation and Kefir Culture
Q98207676Fine sediment and flow velocity impact bacterial community and functional profile more than nutrient enrichment
Q57463290Flaxseed meal and oat hulls supplementation: impact on predicted production and absorption of volatile fatty acids and energy from hindgut fermentation in growing pigs
Q46217511From Genes to Ecosystems in Microbiology: Modeling Approaches and the Importance of Individuality
Q98466542From Microbial Communities to Distributed Computing Systems
Q38201029Genome-based Modeling and Design of Metabolic Interactions in Microbial Communities
Q46259934Genome-driven evolutionary game theory helps understand the rise of metabolic interdependencies in microbial communities.
Q35005453Genome-scale modeling and human disease: an overview
Q36559073Genomic Analysis of the Human Gut Microbiome Suggests Novel Enzymes Involved in Quinone Biosynthesis
Q33786338Global metabolic interaction network of the human gut microbiota for context-specific community-scale analysis.
Q34093458Glycan degradation (GlyDeR) analysis predicts mammalian gut microbiota abundance and host diet-specific adaptations
Q36250171Harnessing the landscape of microbial culture media to predict new organism-media pairings
Q28828174High functional diversity stimulates diversification in experimental microbial communities
Q34582046Hypolithic and soil microbial community assembly along an aridity gradient in the Namib Desert.
Q30355333In-cell NMR: an emerging approach for monitoring metal-related events in living cells.
Q92090571Incompatibility of Vibrio fischeri Strains during Symbiosis Establishment Depends on Two Functionally Redundant hcp Genes
Q30991451Inferring microbial interaction network from microbiome data using RMN algorithm
Q48266984Initial evenness determines diversity and cell density dynamics in synthetic microbial ecosystems
Q57456959Integrated culturing, modeling and transcriptomics uncovers complex interactions and emergent behavior in a three-species synthetic gut community
Q90160249Interpretable and accurate prediction models for metagenomics data
Q38763272Limitations of a metabolic network-based reverse ecology method for inferring host-pathogen interactions
Q42204801Lotka-Volterra pairwise modeling fails to capture diverse pairwise microbial interactions
Q34616367Mapping the inner workings of the microbiome: genomic- and metagenomic-based study of metabolism and metabolic interactions in the human microbiome
Q64097453Metabolic Modeling of Cystic Fibrosis Airway Communities Predicts Mechanisms of Pathogen Dominance
Q90376452Metabolic Modeling of Microbial Community Interactions for Health, Environmental and Biotechnological Applications
Q26799830Metabolic interactions in microbial communities: untangling the Gordian knot
Q37192595Metabolic modelling in a dynamic evolutionary framework predicts adaptive diversification of bacteria in a long-term evolution experiment
Q30279122Metabolic network modeling of microbial communities
Q83231503Metabolic network percolation quantifies biosynthetic capabilities across the human oral microbiome
Q33900751Metabolic resource allocation in individual microbes determines ecosystem interactions and spatial dynamics
Q90571703Metabolically cohesive microbial consortia and ecosystem functioning
Q37655107Microbial Consortia Engineering for Cellular Factories: in vitro to in silico systems
Q52340077Microbial interactions within the plant holobiont.
Q34337828Microbial interactions: from networks to models
Q54941626Microbial wars: Competition in ecological niches and within the microbiome.
Q51326066Microbiology. Microbial cooperative warfare.
Q40034903Model-based media selection to minimize the cost of metabolic cooperation in microbial ecosystems
Q35850350Modeling cancer metabolism on a genome scale
Q57021885Modeling microbial communities from atrazine contaminated soils promotes the development of biostimulation solutions
Q26826910Modeling microbial community structure and functional diversity across time and space
Q55000580Modeling trophic dependencies and exchanges among insects' bacterial symbionts in a host-simulated environment.
Q39433303More than just a gut feeling: constraint-based genome-scale metabolic models for predicting functions of human intestinal microbes
Q36394730Mycelium-mediated transfer of water and nutrients stimulates bacterial activity in dry and oligotrophic environments
Q51358579NetCmpt: a network-based tool for calculating the metabolic competition between bacterial species.
Q36394231Networks of energetic and metabolic interactions define dynamics in microbial communities
Q97518472New Methods, New Concepts: What Can Be Applied to Freshwater Periphyton?
Q26999275Nutrient cross-feeding in the microbial world
Q38662341Perspectives and Challenges in Microbial Communities Metabolic Modeling
Q40065854Predicting compositions of microbial communities from stoichiometric models with applications for the biogas process.
Q46766937Predicting ecosystem emergent properties at multiple scales
Q38792983Predicting microbial interactions through computational approaches
Q35618137Presence of Pseudomonas aeruginosa influences biofilm formation and surface protein expression of Staphylococcus aureus
Q57473677Protective role of the vulture facial skin and gut microbiomes aid adaptation to scavenging
Q39700863Quantifying the Relative Importance of Phylogeny and Environmental Preferences As Drivers of Gene Content in Prokaryotic Microorganisms.
Q28818725Quorum Sensing N-acyl Homoserine Lactones-SdiA Suppresses Escherichia coli-Pseudomonas aeruginosa Conjugation through Inhibiting traI Expression
Q28075566Recent Developments in Systems Biology and Metabolic Engineering of Plant-Microbe Interactions
Q30253025Reconstruction of the metabolic network of Pseudomonas aeruginosa to interrogate virulence factor synthesis
Q32173903Relating genomic characteristics to environmental preferences and ubiquity in different microbial taxa
Q35040743Repression of tropolone production and induction of a Burkholderia plantarii pseudo-biofilm by carot-4-en-9,10-diol, a cell-to-cell signaling disrupter produced by Trichoderma virens
Q35010326Resource availability and competition shape the evolution of survival and growth ability in a bacterial community
Q100958809Resource partitioning of phytoplankton metabolites that support bacterial heterotrophy
Q91818410Review: The application of omics to rumen microbiota function
Q41521034Self-establishing communities enable cooperative metabolite exchange in a eukaryote
Q37263625Shared metabolic pathways in a coevolved insect-bacterial symbiosis
Q64075257Shift in Natural Groundwater Bacterial Community Structure Due to Zero-Valent Iron Nanoparticles (nZVI)
Q38154674Software platforms to facilitate reconstructing genome-scale metabolic networks
Q33739444SteadyCom: Predicting microbial abundances while ensuring community stability
Q56892902Stoichiometric Shifts in Soil C:N:P Promote Bacterial Taxa Dominance, Maintain Biodiversity, and Deconstruct Community Assemblages
Q46701162Synchronized dynamics of bacterial niche-specific functions during biofilm development in a cold seep brine pool
Q39907907Synergistic growth in bacteria depends on substrate complexity.
Q64228992Synthetic Mutualism and the Intervention Dilemma
Q90441773Synthetic ecology of the human gut microbiota
Q35121452Synthetic microbial communities
Q35206004Synthetic microbial consortia: from systematic analysis to construction and applications
Q35619563Systems biology of host-microbe metabolomics
Q35143652Systems-based approaches to unravel multi-species microbial community functioning
Q36564712Systems-level characterization of a host-microbe metabolic symbiosis in the mammalian gut
Q39445652Temperature Impacts on Soil Microbial Communities and Potential Implications for the Biodegradation of Turfgrass Pesticides
Q36131476The Contribution of High-Order Metabolic Interactions to the Global Activity of a Four-Species Microbial Community
Q92890526The Human Gut Microbiome is Structured to Optimize Molecular Interaction Networks
Q35776334The Interplay between Scientific Overlap and Cooperation and the Resulting Gain in Co-Authorship Interactions
Q35186525The demographic determinants of human microbiome health
Q64083788The genetic basis for adaptation of model-designed syntrophic co-cultures
Q98952093The initial inoculation ratio regulates bacterial coculture interactions and metabolic capacity
Q35683444Thermodynamics and H2 Transfer in a Methanogenic, Syntrophic Community
Q34691436Towards a predictive systems-level model of the human microbiome: progress, challenges, and opportunities
Q35787152Transient dynamics of competitive exclusion in microbial communities
Q35786042Trophic network architecture of root-associated bacterial communities determines pathogen invasion and plant health
Q36286224Two dynamic regimes in the human gut microbiome
Q93239182Understanding and Engineering Distributed Biochemical Pathways in Microbial Communities
Q27316468Visualization of Metabolic Interaction Networks in Microbial Communities Using VisANT 5.0
Q37098782When communities collide
Q36245340Where less may be more: how the rare biosphere pulls ecosystems strings
Q91827145You are what you eat: diet, health and the gut microbiota

Search more.