| review article | Q7318358 |
| scholarly article | Q13442814 |
| P50 | author | Johan H J Leveau | Q90257428 |
| Clara Prats | Q52731169 | ||
| Jan-Ulrich Kreft | Q54143137 | ||
| P2093 | author name string | Caroline M Plugge | |
| Weiwen Zhang | |||
| Ferdi L Hellweger | |||
| P2860 | cites work | Dynamic flux balance modeling of microbial co-cultures for efficient batch fermentation of glucose and xylose mixtures. | Q54378421 |
| Summer heatwaves promote blooms of harmful cyanobacteria | Q56115994 | ||
| A problem of persistence: still more questions than answers? | Q56761811 | ||
| Is maximization of molar yield in metabolic networks favoured by evolution? | Q57320470 | ||
| Individual-based modelling of adaptation in marine microbial populations using genetically defined physiological parameters | Q57933910 | ||
| The GS-GOGAT pathway is not operative in the heterocysts. Cloning and expression of glsF gene from the cyanobacterium Anabaena sp. PCC 7120 | Q58480360 | ||
| Penetration of oxygen into bacterial colonies | Q70445543 | ||
| Micromixing in fermentors: metabolic changes in Saccharomyces cerevisiae and their relationship to fluid turbulence | Q81570454 | ||
| Embracing the mantra of modellers and synthesizing omics, experiments and models | Q88616813 | ||
| Localization of protein aggregation in Escherichia coli is governed by diffusion and nucleoid macromolecular crowding effect | Q21563476 | ||
| Environments that induce synthetic microbial ecosystems | Q21563487 | ||
| Robust growth of Escherichia coli | Q24611036 | ||
| A whole-cell computational model predicts phenotype from genotype | Q24622101 | ||
| Non-genetic heterogeneity from stochastic partitioning at cell division | Q24631799 | ||
| Comprehensive identification of cell cycle-regulated genes of the yeast Saccharomyces cerevisiae by microarray hybridization | Q24657378 | ||
| Metabolic Network Modeling of Microbial Interactions in Natural and Engineered Environmental Systems | Q26744686 | ||
| Synthetic Ecology of Microbes: Mathematical Models and Applications | Q26777567 | ||
| Application of metagenomics in the human gut microbiome | Q26851464 | ||
| Bet hedging in yeast by heterogeneous, age-correlated expression of a stress protectant | Q27319462 | ||
| Analysis of optimality in natural and perturbed metabolic networks | Q28213254 | ||
| Microbial cell individuality and the underlying sources of heterogeneity | Q28252446 | ||
| Comparison of network-based pathway analysis methods | Q28274818 | ||
| Context-specific metabolic networks are consistent with experiments | Q28472711 | ||
| Competitive and cooperative metabolic interactions in bacterial communities. | Q39676882 | ||
| Stoichiometric flux balance models quantitatively predict growth and metabolic by-product secretion in wild-type Escherichia coli W3110. | Q39916365 | ||
| Flux balance analysis accounting for metabolite dilution | Q41018622 | ||
| Use of agent-based modeling to explore the mechanisms of intracellular phosphorus heterogeneity in cultured phytoplankton | Q41436525 | ||
| Stoichiometric model and flux balance analysis for a mixed culture of Leptospirillum ferriphilum and Ferroplasma acidiphilum. | Q41693997 | ||
| Dynamic metabolic modeling of a microaerobic yeast co-culture: predicting and optimizing ethanol production from glucose/xylose mixtures | Q42012504 | ||
| Isolated microbial single cells and resulting micropopulations grow faster in controlled environments | Q42259015 | ||
| Emergent cooperation in microbial metabolism | Q42397954 | ||
| Genome-scale dynamic modeling of the competition between Rhodoferax and Geobacter in anoxic subsurface environments | Q42743118 | ||
| Genome‐scale metabolic modeling of a clostridial co‐culture for consolidated bioprocessing | Q42954180 | ||
| N-terminal acetylation and replicative age affect proteasome localization and cell fitness during aging | Q43088198 | ||
| Metabolic modelling of syntrophic-like growth of a 1,3-propanediol producer, Clostridium butyricum, and a methanogenic archeon, Methanosarcina mazei, under anaerobic conditions | Q43292159 | ||
| High and stable substrate specificities of microorganisms in enhanced biological phosphorus removal plants | Q43353837 | ||
| Characterization and modelling of interspecies electron transfer mechanisms and microbial community dynamics of a syntrophic association | Q44156854 | ||
| Carrying photosynthesis genes increases ecological fitness of cyanophage in silico | Q44364538 | ||
| Quality control: putting protein aggregates in a bind | Q45828012 | ||
| Self-destructive cooperation mediated by phenotypic noise. | Q45951262 | ||
| How microbes survive in the open ocean. | Q46004142 | ||
| Asymmetric Damage Segregation Constitutes an Emergent Population-Level Stress Response | Q46273057 | ||
| A road map for the development of community systems (CoSy) biology | Q46534952 | ||
| Dynamic, mechanistic, molecular-level modelling of cyanobacteria: Anabaena and nitrogen interaction | Q46566955 | ||
| Escherichia coliadapts to tetracycline resistance plasmid (pBR322) by mutating endogenous potassium transport:in silicohypothesis testing | Q46637874 | ||
| The design of long‐term effective uranium bioremediation strategy using a community metabolic model | Q47891637 | ||
| The mechanics of bacterial cluster formation on plant leaf surfaces as revealed by bioreporter technology | Q50501831 | ||
| Microbial seed banks: the ecological and evolutionary implications of dormancy | Q51173560 | ||
| Trade-offs of chemotactic foraging in turbulent water | Q51304105 | ||
| Phenotypic diversity, population growth, and information in fluctuating environments | Q51965535 | ||
| From molecular noise to behavioural variability in a single bacterium | Q52000300 | ||
| Stochasticity of metabolism and growth at the single-cell level | Q53053028 | ||
| 100 Years since Streeter and Phelps: It Is Time To Update the Biology in Our Water Quality Models | Q53229729 | ||
| Community flux balance analysis for microbial consortia at balanced growth | Q28533513 | ||
| Plankton networks driving carbon export in the oligotrophic ocean | Q28603507 | ||
| A genome-wide analysis of promoter-mediated phenotypic noise in Escherichia coli | Q28732701 | ||
| Ecosystem dynamics based on plankton functional types for global ocean biogeochemistry models | Q29031510 | ||
| Bacterial community variation in human body habitats across space and time | Q29547432 | ||
| Reconstruction of biochemical networks in microorganisms | Q29616018 | ||
| Bacterial persistence as a phenotypic switch | Q29618111 | ||
| Treg induction by a rationally selected mixture of Clostridia strains from the human microbiota | Q29618128 | ||
| Metabolic network modeling of microbial communities | Q30279122 | ||
| Predicting the response of the deep-ocean microbiome to geochemical perturbations by hydrothermal vents. | Q30377666 | ||
| Novel multiscale modeling tool applied to Pseudomonas aeruginosa biofilm formation | Q30416783 | ||
| Asymmetric segregation of protein aggregates is associated with cellular aging and rejuvenation. | Q30481495 | ||
| Modelling emergence of oscillations in communicating bacteria: a structured approach from one to many cells | Q30534748 | ||
| Microbial community structure in autotrophic nitrifying granules characterized by experimental and simulation analyses | Q30874473 | ||
| Context-specific metabolic network reconstruction of a naphthalene-degrading bacterial community guided by metaproteomic data | Q30885879 | ||
| Compartmentalized function through cell differentiation in filamentous cyanobacteria. | Q30960272 | ||
| Biofilms promote altruism | Q31104215 | ||
| In silico approaches to study mass and energy flows in microbial consortia: a syntrophic case study. | Q33517877 | ||
| Antimalarial drug targets in Plasmodium falciparum predicted by stage-specific metabolic network analysis | Q33679330 | ||
| A modular minimal cell model: purine and pyrimidine transport and metabolism | Q33696631 | ||
| Controlling harmful cyanobacterial blooms in a world experiencing anthropogenic and climatic-induced change | Q33827687 | ||
| Genome complexity, robustness and genetic interactions in digital organisms. | Q33871822 | ||
| Metabolic resource allocation in individual microbes determines ecosystem interactions and spatial dynamics | Q33900751 | ||
| A computational exploration of bacterial metabolic diversity identifying metabolic interactions and growth-efficient strain communities | Q34050854 | ||
| OptCom: a multi-level optimization framework for the metabolic modeling and analysis of microbial communities | Q34154442 | ||
| Dynamic flux balance analysis of diauxic growth in Escherichia coli | Q34178626 | ||
| Ecosystems biology of microbial metabolism | Q34185936 | ||
| Insight into human alveolar macrophage and M. tuberculosis interactions via metabolic reconstructions | Q34344292 | ||
| Fission yeast does not age under favorable conditions, but does so after stress. | Q34371090 | ||
| Adaptability of non-genetic diversity in bacterial chemotaxis | Q34411302 | ||
| Analysis of surface protein expression reveals the growth pattern of the gram-negative outer membrane | Q34426332 | ||
| Marine microbes see a sea of gradients | Q34464187 | ||
| Diel gene expression profiles of a phosphorus limited mountain lake using metatranscriptomics. | Q34487097 | ||
| Scaling laws governing stochastic growth and division of single bacterial cells | Q34526498 | ||
| Architecture of a transcribing-translating expressome | Q34555220 | ||
| Cyanobacterial daily life with Kai-based circadian and diurnal genome-wide transcriptional control in Synechococcus elongatus | Q37310804 | ||
| Asymmetrical distribution of the second messenger c-di-GMP upon bacterial cell division | Q37531699 | ||
| Gene-centric approach to integrating environmental genomics and biogeochemical models. | Q37571168 | ||
| Compartmentalized cyanophycin metabolism in the diazotrophic filaments of a heterocyst-forming cyanobacterium | Q37640993 | ||
| Phase variation: how to create and coordinate population diversity. | Q37835537 | ||
| Microbial modulators of soil carbon storage: integrating genomic and metabolic knowledge for global prediction. | Q38153966 | ||
| How sisters grow apart: mycobacterial growth and division | Q38226730 | ||
| Global analysis of the genetic network controlling a bacterial cell cycle | Q38305782 | ||
| Non-random distribution of macromolecules as driving forces for phenotypic variation. | Q38479855 | ||
| Quantification of lateral heterogeneity in carbohydrate permeability of isolated plant leaf cuticles. | Q38834875 | ||
| Constraint-based stoichiometric modelling from single organisms to microbial communities. | Q39196318 | ||
| Inoculation density and nutrient level determine the formation of mushroom-shaped structures in Pseudomonas aeruginosa biofilms. | Q39406850 | ||
| Distribution of bacterial growth activity in flow-chamber biofilms | Q39527850 | ||
| Metabolic potential of microbial mats and microbialites: Autotrophic capabilities described by an in silico stoichiometric approach from shared genomic resources. | Q39669162 | ||
| Repair rather than segregation of damage is the optimal unicellular aging strategy | Q34568460 | ||
| Single-cell analysis reveals gene-expression heterogeneity in syntrophic dual-culture of Desulfovibrio vulgaris with Methanosarcina barkeri | Q34698812 | ||
| Metabolic modeling of species interaction in the human microbiome elucidates community-level assembly rules | Q34822704 | ||
| Understanding the interactions between bacteria in the human gut through metabolic modeling | Q34975280 | ||
| Explaining bacterial dispersion on leaf surfaces with an individual-based model (PHYLLOSIM) | Q35016784 | ||
| Ecological modeling from time-series inference: insight into dynamics and stability of intestinal microbiota | Q35069150 | ||
| Age-correlated stress resistance improves fitness of yeast: support from agent-based simulations | Q35094615 | ||
| Genome-scale metabolic reconstructions of Bifidobacterium adolescentis L2-32 and Faecalibacterium prausnitzii A2-165 and their interaction | Q35141420 | ||
| d-OptCom: Dynamic multi-level and multi-objective metabolic modeling of microbial communities | Q35151234 | ||
| Precision microbiome reconstitution restores bile acid mediated resistance to Clostridium difficile. | Q35163017 | ||
| Metabolic model reconstruction and analysis of an artificial microbial ecosystem for vitamin C production. | Q35166250 | ||
| Emergent biosynthetic capacity in simple microbial communities | Q35200847 | ||
| Quantifying the effects of the division of labor in metabolic pathways | Q35209137 | ||
| Spatially-resolved metabolic cooperativity within dense bacterial colonies | Q35223683 | ||
| Modelling the emergent dynamics and major metabolites of the human colonic microbiota | Q35228982 | ||
| Anoxic Conditions Promote Species-Specific Mutualism between Gut Microbes In Silico | Q35595024 | ||
| Unraveling interactions in microbial communities - from co-cultures to microbiomes. | Q35620876 | ||
| Metabolic dependencies drive species co-occurrence in diverse microbial communities | Q35622200 | ||
| Metabolic modeling of a mutualistic microbial community. | Q35742362 | ||
| Calibration and analysis of genome-based models for microbial ecology | Q35810400 | ||
| MDSINE: Microbial Dynamical Systems INference Engine for microbiome time-series analyses. | Q36040381 | ||
| Advancing microbial sciences by individual-based modelling | Q36041733 | ||
| Asymmetry and aging of mycobacterial cells lead to variable growth and antibiotic susceptibility | Q36096651 | ||
| Cell-to-cell heterogeneity in growth rate and gene expression in Methylobacterium extorquens AM1 | Q36098414 | ||
| Integrating biogeochemistry with multiomic sequence information in a model oxygen minimum zone | Q36140307 | ||
| Modelling plankton ecosystems in the meta-omics era. Are we ready? | Q36304875 | ||
| Relationship between cellular response and behavioral variability in bacterial chemotaxis | Q36491299 | ||
| Evidence for hydrogen oxidation and metabolic plasticity in widespread deep-sea sulfur-oxidizing bacteria | Q36512366 | ||
| In situ substrate preferences of abundant bacterioplankton populations in a prealpine freshwater lake. | Q36792485 | ||
| Heterogeneity in protein expression induces metabolic variability in a modeled Escherichia coli population. | Q37117908 | ||
| Bistability, epigenetics, and bet-hedging in bacteria | Q37184651 | ||
| Superposition of Individual Activities: Urea-Mediated Suppression of Nitrate Uptake in the Dinoflagellate Prorocentrum minimum Revealed at the Population and Single-Cell Levels. | Q37201851 | ||
| Coupling a genome-scale metabolic model with a reactive transport model to describe in situ uranium bioremediation. | Q37274785 | ||
| Transcriptional Control in Marine Copiotrophic and Oligotrophic Bacteria with Streamlined Genomes | Q37287087 | ||
| P921 | main subject | ecosystem | Q37813 |
| P304 | page(s) | 2299 | |
| P577 | publication date | 2017-11-27 | |
| P1433 | published in | Frontiers in Microbiology | Q27723481 |
| P1476 | title | From Genes to Ecosystems in Microbiology: Modeling Approaches and the Importance of Individuality | |
| P478 | volume | 8 |
| Q64974597 | Augmenting Biogas Process Modeling by Resolving Intracellular Metabolic Activity. |
| Q61449817 | Extreme Osmotolerance and Halotolerance in Food-Relevant Yeasts and the Role of Glycerol-Dependent Cell Individuality |
| Q58757809 | FLYCOP: metabolic modeling-based analysis and engineering microbial communities |
| Q104501886 | Future directions for studying resilience of the oral ecosystem |
| Q97526594 | Toward Engineering Biosystems With Emergent Collective Functions |
Search more.