| scholarly article | Q13442814 |
| review article | Q7318358 |
| P356 | DOI | 10.1038/NRMICRO.2016.62 |
| P698 | PubMed publication ID | 27265769 |
| P50 | author | Jan-Ulrich Kreft | Q54143137 |
| P2093 | author name string | Caroline M Plugge | |
| Ferdi L Hellweger | |||
| James R Clark | |||
| Robert J Clegg | |||
| P2860 | cites work | Environments that induce synthetic microbial ecosystems | Q21563487 |
| Pseudomonas aeruginosa displays multiple phenotypes during development as a biofilm | Q24538827 | ||
| Single-cell microbiology: tools, technologies, and applications | Q24562808 | ||
| Non-genetic heterogeneity from stochastic partitioning at cell division | Q24631799 | ||
| Bacterial metapopulations in nanofabricated landscapes | Q24675317 | ||
| Metabolic and demographic feedbacks shape the emergent spatial structure and function of microbial communities | Q27323496 | ||
| Microbial cell individuality and the underlying sources of heterogeneity | Q28252446 | ||
| Involvement of bacterial migration in the development of complex multicellular structures in Pseudomonas aeruginosa biofilms | Q28492897 | ||
| Roles of type IV pili, flagellum-mediated motility and extracellular DNA in the formation of mature multicellular structures in Pseudomonas aeruginosa biofilms | Q28493090 | ||
| Diversity in times of adversity: probabilistic strategies in microbial survival games | Q29039603 | ||
| Reconstruction of biochemical networks in microorganisms | Q29616018 | ||
| Bacterial persistence as a phenotypic switch | Q29618111 | ||
| The Pseudomonas aeruginosa transcriptome in planktonic cultures and static biofilms using RNA sequencing | Q30470671 | ||
| Surface sensing and lateral subcellular localization of WspA, the receptor in a chemosensory-like system leading to c-di-GMP production | Q30528484 | ||
| Modelling emergence of oscillations in communicating bacteria: a structured approach from one to many cells | Q30534748 | ||
| A chemostat array enables the spatio-temporal analysis of the yeast proteome | Q30547352 | ||
| Experimental and simulation analysis of community structure of nitrifying bacteria in a membrane-aerated biofilm. | Q30831930 | ||
| Trophic interactions induce spatial self-organization of microbial consortia on rough surfaces. | Q30844199 | ||
| Microbial community structure in autotrophic nitrifying granules characterized by experimental and simulation analyses | Q30874473 | ||
| Apparent surface associated lag time in growth of primary biofilm cells | Q30920603 | ||
| Biofilm formation by Pseudomonas aeruginosa wild type, flagella and type IV pili mutants | Q30944663 | ||
| Biofilms promote altruism | Q31104215 | ||
| Assessment of three-dimensional biofilm models through direct comparison with confocal microscopy imaging. | Q33205699 | ||
| Analyzing characteristic length scales in biofilm structures | Q33379166 | ||
| iDynoMiCS: next-generation individual-based modelling of biofilms | Q33848394 | ||
| Evolution of two-component signal transduction systems | Q33898396 | ||
| Metabolic resource allocation in individual microbes determines ecosystem interactions and spatial dynamics | Q33900751 | ||
| Flow cytometry and cell sorting of heterogeneous microbial populations: the importance of single-cell analyses | Q34063938 | ||
| Growth dependence of conjugation explains limited plasmid invasion in biofilms: an individual-based modelling study | Q34215024 | ||
| Constraining the metabolic genotype-phenotype relationship using a phylogeny of in silico methods | Q34257056 | ||
| Complete nitrification by Nitrospira bacteria | Q34503171 | ||
| Complete nitrification by a single microorganism | Q34503178 | ||
| Resource competition and social conflict in experimental populations of yeast | Q34530526 | ||
| Revised Estimates for the Number of Human and Bacteria Cells in the Body | Q34537872 | ||
| Revised estimates for the number of human and bacteria cells in the body | Q55921381 | ||
| How the chemotactic characteristics of bacteria can determine their population patterns | Q56041127 | ||
| The ODD protocol: A review and first update | Q57124954 | ||
| Individual-Based Modeling of Ecological and Evolutionary Processes | Q57126200 | ||
| Individual-based modelling of adaptation in marine microbial populations using genetically defined physiological parameters | Q57933910 | ||
| Microzones surrounding phytoplankton form the basis for a stratified marine microbial ecosystem | Q59058905 | ||
| Dynamic Modeling of Cellular Populations within iBioSim | Q59859495 | ||
| Microscale patchiness leads to large and important intraspecific internal nutrient heterogeneity in phytoplankton | Q59905837 | ||
| Microbial motility involvement in biofilm structure formation – a 3D modelling study | Q60451785 | ||
| Multidimensional modelling to investigate interspecies hydrogen transfer in anaerobic biofilms | Q61759189 | ||
| Mathematical Modeling of Microbial Ecology: Spatial Dynamics of Interactions in Biofilms and Guts | Q62084600 | ||
| Acceleration of emergence of bacterial antibiotic resistance in connected microenvironments | Q84975610 | ||
| Microscale nutrient patches in planktonic habitats shown by chemotactic bacteria | Q95442822 | ||
| Strong inter-population cooperation leads to partner intermixing in microbial communities | Q34566652 | ||
| Repair rather than segregation of damage is the optimal unicellular aging strategy | Q34568460 | ||
| Surface attachment induces Pseudomonas aeruginosa virulence | Q34601277 | ||
| Biofilm image reconstruction for assessing structural parameters | Q34792128 | ||
| A single-cell view on the ecophysiology of anaerobic phototrophic bacteria | Q34878620 | ||
| Response of Prochlorococcus ecotypes to co-culture with diverse marine bacteria | Q35135828 | ||
| Models in biology: 'accurate descriptions of our pathetic thinking'. | Q35179460 | ||
| Evolution of the CRISPR-Cas adaptive immunity systems in prokaryotes: models and observations on virus-host coevolution | Q35265236 | ||
| Probing individual environmental bacteria for viruses by using microfluidic digital PCR. | Q35682506 | ||
| Interactions between diatoms and bacteria | Q36194934 | ||
| Pattern-oriented modeling of agent-based complex systems: lessons from ecology | Q36311778 | ||
| Relationship between cellular response and behavioral variability in bacterial chemotaxis | Q36491299 | ||
| Heterogeneity in protein expression induces metabolic variability in a modeled Escherichia coli population. | Q37117908 | ||
| Evolutionary dynamics of the prokaryotic adaptive immunity system CRISPR-Cas in an explicit ecological context | Q37124966 | ||
| Spatial self-organization favors heterotypic cooperation over cheating | Q37295444 | ||
| Mighty small: Observing and modeling individual microbes becomes big science. | Q37318089 | ||
| Single-cell ecophysiology of microbes as revealed by Raman microspectroscopy or secondary ion mass spectrometry imaging | Q37514150 | ||
| Central role of the cell in microbial ecology | Q37640974 | ||
| Going local: technologies for exploring bacterial microenvironments | Q37699391 | ||
| Detecting metabolic activities in single cells, with emphasis on nanoSIMS. | Q37957210 | ||
| Zooming in to see the bigger picture: microfluidic and nanofabrication tools to study bacteria. | Q38262492 | ||
| Interaction and signalling between a cosmopolitan phytoplankton and associated bacteria. | Q40897125 | ||
| Microbial individuality in the natural environment | Q41960256 | ||
| Identification and assembly of genomes and genetic elements in complex metagenomic samples without using reference genomes | Q42207944 | ||
| Isolated microbial single cells and resulting micropopulations grow faster in controlled environments | Q42259015 | ||
| Gene expression in Pseudomonas aeruginosa biofilms | Q43777487 | ||
| Long-term monitoring of bacteria undergoing programmed population control in a microchemostat | Q44275805 | ||
| A microfluidic chemostat for experiments with bacterial and yeast cells. | Q45949907 | ||
| Do simple models lead to generality in ecology? | Q51165636 | ||
| Why is metabolic labour divided in nitrification? | Q51223837 | ||
| Computational modeling of synthetic microbial biofilms. | Q51596850 | ||
| Microbial motility involvement in biofilm structure formation--a 3D modelling study. | Q51707525 | ||
| Local migration promotes competitive restraint in a host-pathogen 'tragedy of the commons'. | Q51724718 | ||
| Phenotypic diversity, population growth, and information in fluctuating environments. | Q51965535 | ||
| From molecular noise to behavioural variability in a single bacterium. | Q52000300 | ||
| BacSim, a simulator for individual-based modelling of bacterial colony growth. | Q52227664 | ||
| Stochasticity of metabolism and growth at the single-cell level. | Q53053028 | ||
| Molecular mechanisms underlying bacterial persisters. | Q54290366 | ||
| P433 | issue | 7 | |
| P407 | language of work or name | English | Q1860 |
| P304 | page(s) | 461-471 | |
| P577 | publication date | 2016-06-06 | |
| P1433 | published in | Nature Reviews Microbiology | Q1071797 |
| P1476 | title | Advancing microbial sciences by individual-based modelling | |
| P478 | volume | 14 |
| Q38770026 | A Diverse Community To Study Communities: Integration of Experiments and Mathematical Models To Study Microbial Consortia |
| Q51574513 | A Multi-Compartment Hybrid Computational Model Predicts Key Roles for Dendritic Cells in Tuberculosis Infection. |
| Q98160329 | Agent-Based Modeling and Simulation in Mathematics and Biology Education |
| Q38788842 | Agent-based modelling in synthetic biology |
| Q64064707 | Bacterial surface colonization, preferential attachment and fitness under periodic stress |
| Q91650335 | Bacteriophages benefit from generalized transduction |
| Q41693282 | Bioprocess scale-up/down as integrative enabling technology: from fluid mechanics to systems biology and beyond |
| Q48250962 | Carbon limitation drives GC content evolution of a marine bacterium in an individual-based genome-scale model. |
| Q90242627 | Common principles and best practices for engineering microbiomes |
| Q89558855 | Considering the Role of Adaptive Evolution in Models of the Ocean and Climate System |
| Q39456399 | Continuum and discrete approach in modeling biofilm development and structure: a review. |
| Q96953975 | Deep learning predicts microbial interactions from self-organized spatiotemporal patterns |
| Q47558326 | Digital Image Analysis of Yeast Single Cells Growing in Two Different Oxygen Concentrations to Analyze the Population Growth and to Assist Individual-Based Modeling. |
| Q64066978 | Dispersal homogenizes communities via immigration even at low rates in a simplified synthetic bacterial metacommunity |
| Q38645248 | Division of Labor, Bet Hedging, and the Evolution of Mixed Biofilm Investment Strategies |
| Q47158755 | Editorial: The microbiome as a source of new enterprises and job creation |
| Q30356619 | Effects of stochasticity and division of labor in toxin production on two-strain bacterial competition in Escherichia coli |
| Q92479563 | Emergence of three-dimensional order and structure in growing biofilms |
| Q57071056 | Emergent Properties of Microbial Activity in Heterogeneous Soil Microenvironments: Different Research Approaches Are Slowly Converging, Yet Major Challenges Remain |
| Q64092906 | Environmental structure drives resistance to phages and antibiotics during phage therapy and to invading lysogens during colonisation |
| Q37616727 | Flow environment and matrix structure interact to determine spatial competition in Pseudomonas aeruginosa biofilms |
| Q46217511 | From Genes to Ecosystems in Microbiology: Modeling Approaches and the Importance of Individuality |
| Q42362408 | Heterogeneity in Pure Microbial Systems: Experimental Measurements and Modeling |
| Q53070557 | High-Performance Agent-Based Modeling Applied to Vocal Fold Inflammation and Repair. |
| Q92921862 | Individual Based Model Links Thermodynamics, Chemical Speciation and Environmental Conditions to Microbial Growth |
| Q58388311 | Integrating Herbivore Population Dynamics Into a Global Land Biosphere Model: Plugging Animals Into the Earth System |
| Q47346675 | Integrating metabolic modeling and population heterogeneity analysis into optimizing recombinant protein production by Komagataella (Pichia) pastoris. |
| Q36300922 | MI-Sim: A MATLAB package for the numerical analysis of microbial ecological interactions |
| Q28831212 | MbT-Tool: An open-access tool based on Thermodynamic Electron Equivalents Model to obtain microbial-metabolic reactions to be used in biotechnological process |
| Q57272559 | Micro-scale intermixing: a requisite for stable and synergistic co-establishment in a four-species biofilm |
| Q37570426 | Microscale Insight into Microbial Seed Banks. |
| Q64295948 | Mobile Compensatory Mutations Promote Plasmid Survival |
| Q47366986 | Modeling Microbial Electrosynthesis |
| Q91917249 | NUFEB: A massively parallel simulator for individual-based modelling of microbial communities |
| Q38662341 | Perspectives and Challenges in Microbial Communities Metabolic Modeling |
| Q47361651 | Phage mobility is a core determinant of phage-bacteria coexistence in biofilms. |
| Q90198525 | Revealing Evolutionarily Optimal Strategies in Self-Reproducing Systems via a New Computational Approach |
| Q41062024 | Spatial Organization Plasticity as an Adaptive Driver of Surface Microbial Communities |
| Q50282051 | Spatial organization of bacterial populations in response to oxygen and carbon counter-gradients in pore networks |
| Q97526594 | Toward Engineering Biosystems With Emergent Collective Functions |
| Q92866217 | Towards the Construction of a Mathematically Rigorous Framework for the Modelling of Evolutionary Fitness |
| Q92267080 | Uncovering the rules of microbial community invasions |
| Q93239182 | Understanding and Engineering Distributed Biochemical Pathways in Microbial Communities |
| Q90571692 | Understanding the evolution of interspecies interactions in microbial communities |
Search more.