Contribution of transcriptomics to systems-level understanding of methanogenic Archaea

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Contribution of transcriptomics to systems-level understanding of methanogenic Archaea is …
instance of (P31):
review articleQ7318358
scholarly articleQ13442814

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P356DOI10.1155/2013/586369
P932PMC publication ID3600222
P698PubMed publication ID23533330
P5875ResearchGate publication ID236084865

P2093author name stringHinsby Cadillo-Quiroz
Patrick D Browne
P2860cites workMethanocella paludicola gen. nov., sp. nov., a methane-producing archaeon, the first isolate of the lineage 'Rice Cluster I', and proposal of the new archaeal order Methanocellales ord. novQ22065909
Pan-genome of the dominant human gut-associated archaeon, Methanobrevibacter smithii, studied in twinsQ22066277
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Flagellum mediates symbiosis.Q51758976
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Temperature-dependent global gene expression in the Antarctic archaeon Methanococcoides burtoniiQ56927853
Links between methane flux and transcriptional activities of methanogens and methane oxidizers in a blanket peat bogQ57013907
Re-evaluation of the function of the F420 dehydrogenase in electron transport of Methanosarcina mazeiQ62389587
Comparative transcriptome analysis of responses of Methanothermobacter thermautotrophicus to different environmental stimuliQ79953988
Distinct regulators control the expression of methanol methyltransferase isozymes in Methanosarcina acetivorans C2AQ80215372
Development and assessment of whole-genome oligonucleotide microarrays to analyze an anaerobic microbial community and its responses to oxidative stressQ80324663
Divergent transcriptional and translational signals in ArchaeaQ81254862
Identification of genes involved in salt adaptation in the archaeon Methanosarcina mazei Gö1 using genome-wide gene expression profilingQ81559727
DNA microarray analysis of anaerobic Methanosarcina barkeri reveals responses to heat shock and air exposureQ83129727
Growth- and substrate-dependent transcription of formate dehydrogenase and hydrogenase coding genes in Syntrophobacter fumaroxidans and Methanospirillum hungateiQ85116426
Soil microorganisms as controllers of atmospheric trace gases (H2, CO, CH4, OCS, N2O, and NO)Q24650870
RNA polyadenylation and degradation in different Archaea; roles of the exosome and RNase RQ24674158
Comparative proteomic analysis of Methanothermobacter themautotrophicus ΔH in pure culture and in co-culture with a butyrate-oxidizing bacteriumQ28476743
Fundamentals of methanogenic pathways that are key to the biomethanation of complex biomassQ28709592
Characterization of a biogas-producing microbial community by short-read next generation DNA sequencingQ28727221
MreA functions in the global regulation of methanogenic pathways in Methanosarcina acetivoransQ28728434
Quantitative proteomic and microarray analysis of the archaeon Methanosarcina acetivorans grown with acetate versus methanolQ28756654
Methanogenic archaea: ecologically relevant differences in energy conservationQ29617218
Genome-wide analysis of growth phase-dependent translational and transcriptional regulation in halophilic archaea.Q30838193
Experimental characterization of Cis-acting elements important for translation and transcription in halophilic archaeaQ30839855
Characterization of the archaeal community in a minerotrophic fen and terminal restriction fragment length polymorphism-directed isolation of a novel hydrogenotrophic methanogenQ33320146
Regulation of translation in haloarchaea: 5'- and 3'-UTRs are essential and have to functionally interact in vivoQ33408815
Quantitative proteomics of nutrient limitation in the hydrogenotrophic methanogen Methanococcus maripaludisQ33486147
Methanoregula boonei gen. nov., sp. nov., an acidiphilic methanogen isolated from an acidic peat bog.Q33531080
Carbon-dependent control of electron transfer and central carbon pathway genes for methane biosynthesis in the Archaean, Methanosarcina acetivorans strain C2A.Q33533668
A single-base resolution map of an archaeal transcriptomeQ33560237
Deep sequencing analysis of the Methanosarcina mazei Gö1 transcriptome in response to nitrogen availability.Q33564641
Small RNA as global regulator of carbon catabolite repression in Pseudomonas aeruginosaQ33564767
Analysis and prediction of translation rate based on sequence and functional features of the mRNA.Q33799216
Protein complexing in a methanogen suggests electron bifurcation and electron delivery from formate to heterodisulfide reductaseQ33934572
Differential expression of methanogenesis genes of Methanothermobacter thermoautotrophicus (formerly Methanobacterium thermoautotrophicum) in pure culture and in cocultures with fatty acid-oxidizing syntrophsQ34050545
"Methanoplasmatales," Thermoplasmatales-related archaea in termite guts and other environments, are the seventh order of methanogensQ34301338
Leaderless mRNAs bind 70S ribosomes more strongly than 30S ribosomal subunits in Escherichia coliQ34320201
The catalase and superoxide dismutase genes are transcriptionally up-regulated upon oxidative stress in the strictly anaerobic archaeon Methanosarcina barkeriQ34532145
Overlapping repressor binding sites regulate expression of the Methanococcus maripaludis glnK(1) operonQ35015417
Functionally distinct genes regulated by hydrogen limitation and growth rate in methanogenic ArchaeaQ35829119
Evolution of translational initiation: new insights from the archaeaQ36088668
Functional responses of methanogenic archaea to syntrophic growthQ36330210
Global responses of Methanococcus maripaludis to specific nutrient limitations and growth rateQ36483719
Roles of coenzyme F420-reducing hydrogenases and hydrogen- and F420-dependent methylenetetrahydromethanopterin dehydrogenases in reduction of F420 and production of hydrogen during methanogenesisQ36747869
Next-generation sequencing: applications beyond genomesQ36928719
Metabolic, phylogenetic, and ecological diversity of the methanogenic archaeaQ37124153
Quantitative proteomics of the archaeon Methanococcus maripaludis validated by microarray analysis and real time PCRQ37127205
Transcriptional profiling of methyltransferase genes during growth of Methanosarcina mazei on trimethylamine.Q37302005
A 5' leader sequence regulates expression of methanosarcinal CO dehydrogenase/acetyl coenzyme A synthaseQ37410178
Physiology and posttranscriptional regulation of methanol:coenzyme M methyltransferase isozymes in Methanosarcina acetivorans C2A.Q37410233
Bacterial transcriptomics: what is beyond the RNA horiz-ome?Q37916225
Global transcriptional analysis of Methanosarcina mazei strain Gö1 under different nitrogen availabilitiesQ38314094
Establishing a markerless genetic exchange system for Methanosarcina mazei strain Gö1 for constructing chromosomal mutants of small RNA genesQ38533758
Biochemical evidence for formate transfer in syntrophic propionate-oxidizing cocultures of Syntrophobacter fumaroxidans and Methanospirillum hungatei.Q39640662
Growth and Methanogenesis by Methanosarcina Strain 227 on Acetate and MethanolQ40076914
Disruption of the operon encoding Ehb hydrogenase limits anabolic CO2 assimilation in the archaeon Methanococcus maripaludisQ41875477
Correlation of methane production and functional gene transcriptional activity in a peat soilQ41955684
An archaeal sRNA targeting cis- and trans-encoded mRNAs via two distinct domains.Q41982165
Calibration of sulfate levels in the archean ocean.Q42038011
Function of Ech hydrogenase in ferredoxin-dependent, membrane-bound electron transport in Methanosarcina mazeiQ42929309
Two different mechanisms for ribosome/mRNA interaction in archaeal translation initiationQ43035016
Methanogenesis by Methanosarcina acetivorans involves two structurally and functionally distinct classes of heterodisulfide reductaseQ43227899
DNA microarray analysis of Methanosarcina mazei Gö1 reveals adaptation to different methanogenic substratesQ46497796
Methanogenesis in marine sedimentsQ46672538
P275copyright licenseCreative Commons Attribution 3.0 UnportedQ14947546
P6216copyright statuscopyrightedQ50423863
P921main subjecthydrocarbonQ43648
ArchaeaQ10872
transcriptomeQ252857
methanogenesisQ22275999
transcriptomicsQ28946449
P304page(s)586369
P577publication date2013-02-27
P1433published inArchaeaQ15749211
P1476titleContribution of transcriptomics to systems-level understanding of methanogenic Archaea
P478volume2013

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cites work (P2860)
Q28542631Cattle Manure Enhances Methanogens Diversity and Methane Emissions Compared to Swine Manure under Rice Paddy
Q92155986Genome Analyses and Genome-Centered Metatranscriptomics of Methanothermobacter wolfeii Strain SIV6, Isolated from a Thermophilic Production-Scale Biogas Fermenter
Q36238766Horizontal gene transfer drives the evolution of Rh50 permeases in prokaryotes
Q34153777Methane yield phenotypes linked to differential gene expression in the sheep rumen microbiome.
Q90376461Model Microbial Consortia as Tools for Understanding Complex Microbial Communities
Q42267398Non-autotrophic methanogens dominate in anaerobic digesters.
Q89554334Review: Fifty years of research on rumen methanogenesis: lessons learned and future challenges for mitigation
Q28657421Towards a computational model of a methane producing archaeum

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