Are uncultivated bacteria really uncultivable?

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Are uncultivated bacteria really uncultivable? is …
instance of (P31):
review articleQ7318358
scholarly articleQ13442814

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P356DOI10.1264/JSME2.ME12092
P932PMC publication ID4103542
P698PubMed publication ID23059723

P50authorCindy H. NakatsuQ113960814
P2093author name stringYoichi Kamagata
Kozo Asano
Michiko Tanaka
Indun Dewi Puspita
P2860cites workInstability and decay of the primary structure of DNAQ22122361
Microbial community analysis of soils contaminated with lead, chromium and petroleum hydrocarbonsQ46931721
Bacterial activity, community structure, and centimeter-scale spatial heterogeneity in contaminated soilQ46931723
A novel approach for high throughput cultivation assays and the isolation of planktonic bacteriaQ47799028
Culture-dependent and independent analyses of the microbial communities inhabiting the giant duckweed (Spirodela polyrrhiza) rhizoplane and isolation of a variety of rarely cultivated organisms within the phylum VerrucomicrobiaQ48066512
Viability, diversity and composition of the bacterial community in a high Arctic permafrost soil from Spitsbergen, Northern NorwayQ48077111
Role of catalase and oxyR in the viable but nonculturable state of Vibrio vulnificusQ48166264
Cyclic adenosine monophosphate in bacteriaQ50240174
Dormant forms of Mycobacterium smegmatis with distinct morphology.Q50613807
Bacterial resuscitation factors: revival of viable but non-culturable bacteria.Q51125463
Microbial seed banks: the ecological and evolutionary implications of dormancy.Q51173560
Cell-to-cell communication in the populations of enterobacterium Erwinia carotovora ssp. atroseptica SCRI1043 during adaptation to stress conditions.Q51629055
Formation and resuscitation of "non-culturable" cells of Rhodococcus rhodochrous and Mycobacterium tuberculosis in prolonged stationary phase.Q51718626
Role of lipid components in formation and reactivation of Mycobacterium smegmatis "nonculturable" cells.Q53243196
Ultrastructure of coccoid viable but non-culturable Vibrio cholerae.Q53577511
Modification of the peptidoglycan of Escherichia coli in the viable but nonculturable state.Q54551655
Stimulation of the multiplication of Micrococcus luteus by an autocrine growth factorQ56974749
On resuscitation from the dormant state of Micrococcus luteus.Q56974797
Exit from dormancy in microbial organismsQ57153699
Microbial awakeningsQ59064494
Characterization of Bacterial Communities from Activated Sludge: Culture-Dependent Numerical Identification Versus In Situ Identification Using Group- and Genus-Specific rRNA-Targeted Oligonucleotide ProbesQ71210457
Morphology of the viable but nonculturable Vibrio cholerae as determined by the freeze fixation techniqueQ72877732
Resuscitation of viable but nonculturable cells of Vibrio parahaemolyticus induced at low temperature under starvationQ73708983
Evidence of autoinducer activity in naturally occurring biofilmsQ73733390
A comparison of solid and liquid media for resuscitation of starvation- and low-temperature-induced nonculturable cells of Aeromonas hydrophilaQ73803787
[Reproductive resting forms of Arthrobacter globiformis]Q74093018
Viable but non-culturable and dormant bacteria: time to resolve an oxymoron and a misnomer?Q74342872
Resuscitation rate in different enterococcal species in the viable but non-culturable stateQ77652519
Restoration of culturability of starvation-stressed and low-temperature-stressed Escherichia coli O157 cells by using H2O2-degrading compoundsQ77978505
Gene expression profile of Vibrio cholerae in the cold stress-induced viable but non-culturable stateQ79946965
[The role of intercellular contacts in the initiation of growth and in the development of a transiently nonculturable state by the cultures of Rhodococcus rhodochrous grown in poor media]Q81324840
Resuscitation of Vibrio vulnificus from the Viable but Nonculturable StateQ82817069
Dormant ovoid cells of Mycobacterium tuberculosis are formed in response to gradual external acidificationQ83286782
Chemical characterization of soil extract as growth media for the ecophysiological study of bacteriaQ83522980
A six-well plate method: less laborious and effective method for cultivation of obligate anaerobic microorganismsQ84391523
[Dormant form of Micrococcus luteus and Arthrobacter globiformis, not growing on standard media]Q84720593
Survival and viability of nonculturableEscherichia coli andVibrio cholerae in the estuarine and marine environmentQ86719054
Robert Koch and the ‘golden age’ of bacteriologyQ22252186
The Uncultured Microbial MajorityQ22255617
Quorum Sensing in BacteriaQ22255618
Impact of culture-independent studies on the emerging phylogenetic view of bacterial diversity.Q24521497
Phylogenetic identification and in situ detection of individual microbial cells without cultivationQ24651527
A bacterial cytokineQ24678303
The peptidoglycan of stationary-phase Mycobacterium tuberculosis predominantly contains cross-links generated by L,D-transpeptidationQ28486366
A member of the cAMP receptor protein family of transcription regulators in Mycobacterium tuberculosis is required for virulence in mice and controls transcription of the rpfA gene coding for a resuscitation promoting factorQ28487026
Resuscitation of dormant Mycobacterium tuberculosis by phospholipids or specific peptidesQ28487096
A eukaryotic-like Ser/Thr kinase signals bacteria to exit dormancy in response to peptidoglycan fragmentsQ28488857
Quorum sensing: cell-to-cell communication in bacteriaQ29547325
Cultivation of globally distributed soil bacteria from phylogenetic lineages previously only detected in cultivation-independent surveysQ30750881
Spatial and resource factors influencing high microbial diversity in soilQ30790282
High-throughput methods for culturing microorganisms in very-low-nutrient media yield diverse new marine isolatesQ30839805
Culturability and In situ abundance of pelagic bacteria from the North SeaQ30883516
Laboratory cultivation of widespread and previously uncultured soil bacteriaQ30885664
Cultivation-dependent and -independent approaches for determining bacterial diversity in heavy-metal-contaminated soilQ30943901
Quorum sensing in Pseudomonas aeruginosa controls expression of catalase and superoxide dismutase genes and mediates biofilm susceptibility to hydrogen peroxideQ33179293
Comparative analysis of bacterial diversity in freshwater sediment of a shallow eutrophic lake by molecular and improved cultivation-based techniquesQ33213774
Culturability and coexistence of colony-forming and single-cell marine bacterioplanktonQ33221278
Structural characterization of Salmonella typhimurium YeaZ, an M22 O-sialoglycoprotein endopeptidase homologQ33240038
Short peptide induces an "uncultivable" microorganism to grow in vitroQ33339256
Differentially expressed genes in Mycobacterium tuberculosis H37Rv under mild acidic and hypoxic conditionsQ33385423
Fluorescence polarization in studies of bacterial cytoplasmic membrane fluidity under environmental stressQ33437669
Microbial community analysis in the roots of aquatic plants and isolation of novel microbes including an organism of the candidate phylum OP10.Q33674812
Identification of cyclic AMP-regulated genes in Mycobacterium tuberculosis complex bacteria under low-oxygen conditionsQ33726844
Vertical distribution of bacteria in a lake sediment from Antarctica by culture-independent and culture-dependent approachesQ33761922
Bacterial dormancy and culturability: the role of autocrine growth factorsQ33941499
The extracytoplasmic domain of the Mycobacterium tuberculosis Ser/Thr kinase PknB binds specific muropeptides and is required for PknB localizationQ33987461
Recent findings on the viable but nonculturable state in pathogenic bacteriaQ34020799
Cyclic AMP and acyl homoserine lactones increase the cultivation efficiency of heterotrophic bacteria from the central Baltic Sea.Q34056603
Specific detection, isolation, and characterization of selected, previously uncultured members of the freshwater bacterioplankton communityQ34097766
Isolating "uncultivable" microorganisms in pure culture in a simulated natural environmentQ34127944
Hierarchical Evolution of the Bacterial Sporulation NetworkQ34149232
Development of 16S rRNA-gene-targeted group-specific primers for the detection and identification of predominant bacteria in human fecesQ34165676
Survival strategies of bacteria in the natural environment.Q34173787
Measurement of in situ activities of nonphotosynthetic microorganisms in aquatic and terrestrial habitatsQ34194521
Microcolony cultivation on a soil substrate membrane system selects for previously uncultured soil bacteriaQ34232157
Soil microbial community responses to additions of organic carbon substrates and heavy metals (Pb and Cr).Q34232817
Regulation of endospore formation in Bacillus subtilisQ34307580
Responses of the anaerobic bacterial community to addition of organic C in chromium(VI)- and iron(III)-amended microcosmsQ34316188
Cultivating the unculturedQ34388876
Total counts of marine bacteria include a large fraction of non-nucleoid-containing bacteria (ghosts).Q34422735
Cell density-regulated recovery of starved biofilm populations of ammonia-oxidizing bacteriaQ34427844
Small talk. Cell-to-cell communication in bacteria.Q34710012
Effect of signal compounds and incubation conditions on the culturability of freshwater bacterioplanktonQ34993392
Human colonic biota studied by ribosomal DNA sequence analysis.Q35191757
Bacterial diversity among small-subunit rRNA gene clones and cellular isolates from the same seawater sampleQ35198559
Cyclic AMP in prokaryotesQ35227904
Seasonal incidence of Vibrio vulnificus in the Great Bay estuary of New Hampshire and MaineQ35694022
Life after logQ36109652
Long-term survival during stationary phase: evolution and the GASP phenotypeQ36369839
Bacterially speakingQ36456225
Wake up! Peptidoglycan lysis and bacterial non-growth states.Q36468473
Phospholipid ester-linked fatty acid profile changes during nutrient deprivation of Vibrio cholerae: increases in the trans/cis ratio and proportions of cyclopropyl fatty acidsQ36667613
Uptake of Cyclic AMP by Natural Populations of Marine Bacteria.Q36707884
I will survive: DNA protection in bacterial sporesQ36750425
Structure, assembly, and function of the spore surface layers.Q37012825
New strategies for cultivation and detection of previously uncultured microbesQ37044291
Turnover of cell walls in microorganismsQ37064802
How bacteria consume their own exoskeletons (turnover and recycling of cell wall peptidoglycan)Q37183911
Resuscitation-promoting factors as lytic enzymes for bacterial growth and signalingQ37607321
Bacterial competition: surviving and thriving in the microbial jungleQ37641019
Strategies for culture of 'unculturable' bacteriaQ37757054
Uncultured microorganisms as a source of secondary metabolitesQ37774548
Ecological and evolutionary interactions in syntrophic methanogenic consortiaQ37876065
A great leap forward in microbial ecology.Q37876069
The myriad roles of cyclic AMP in microbial pathogens: from signal to swordQ37955761
Bacterial growth stimulation with exogenous siderophore and synthetic N-acyl homoserine lactone autoinducers under iron-limited and low-nutrient conditionsQ39486095
Cell wall chemical composition of Enterococcus faecalis in the viable but nonculturable stateQ39536230
Mycobacterial stationary phase induced by low oxygen tension: cell wall thickening and localization of the 16-kilodalton alpha-crystallin homolog.Q39564571
Improved culturability of soil bacteria and isolation in pure culture of novel members of the divisions Acidobacteria, Actinobacteria, Proteobacteria, and Verrucomicrobia.Q39653368
Quantitative fluorescence in situ hybridization of Bifidobacterium spp. with genus-specific 16S rRNA-targeted probes and its application in fecal samples.Q39798215
In situ analysis of nucleic acids in cold-induced nonculturable Vibrio vulnificusQ39802551
Probing activated sludge with oligonucleotides specific for proteobacteria: inadequacy of culture-dependent methods for describing microbial community structureQ39857519
Dormancy in Stationary-Phase Cultures of Micrococcus luteus: Flow Cytometric Analysis of Starvation and ResuscitationQ39858872
Influence of Viable Cells on the Resuscitation of Dormant Cells in Micrococcus luteus Cultures Held in an Extended Stationary Phase: the Population Effect.Q39916029
Changes in Ester-Linked Phospholipid Fatty Acid Profiles of Subsurface Bacteria during Starvation and Desiccation in a Porous Medium.Q39916033
Membrane fatty acid and virulence changes in the viable but nonculturable state of Vibrio vulnificusQ39922020
Entry of Vibrio cincinnatiensis into viable but nonculturable state and its resuscitationQ40004884
Incubation of environmental samples in a diffusion chamber increases the diversity of recovered isolatesQ40006482
Effects of growth medium, inoculum size, and incubation time on culturability and isolation of soil bacteriaQ40985942
Siderophores from neighboring organisms promote the growth of uncultured bacteriaQ41846710
Unique roles of DosT and DosS in DosR regulon induction and Mycobacterium tuberculosis dormancyQ41872000
Hollow-fiber membrane chamber as a device for in situ environmental cultivationQ42121166
Separation by dielectrophoresis of dormant and nondormant bacterial cells of Mycobacterium smegmatisQ42122944
Resuscitation of the viable but non-culturable state of Salmonella enterica serovar Oranienburg by recombinant resuscitation-promoting factor derived from Salmonella Typhimurium strain LT2.Q42670161
Biochemical and morphological changes in dormant ("Nonculturable") Mycobacterium smegmatis cellsQ43121005
Occurrence and degradation of peptidoglycan in aquatic environments.Q43283180
Factors influencing the cultivability of lake water bacteriaQ43744155
Mycolic acid structure determines the fluidity of the mycobacterial cell wallQ44732618
Formation of 'non-culturable' cells of Mycobacterium smegmatis in stationary phase in response to growth under suboptimal conditions and their Rpf-mediated resuscitation.Q44927291
Biochemical and virulence characterization of viable but nonculturable cells of Vibrio parahaemolyticusQ45155991
Effect of recombinant Rv1009 protein on promoting the growth of Mycobacterium tuberculosisQ45342937
Muralytic activity of Micrococcus luteus Rpf and its relationship to physiological activity in promoting bacterial growth and resuscitationQ46854868
P275copyright licenseCreative Commons Attribution 3.0 UnportedQ14947546
P6216copyright statuscopyrightedQ50423863
P433issue4
P921main subjectbacteriaQ10876
physiological phenomenonQ66615932
P304page(s)356-366
P577publication date2012-10-10
P1433published inMicrobes and environments / JSMEQ26867035
P1476titleAre uncultivated bacteria really uncultivable?
P478volume27

Reverse relations

cites work (P2860)
Q39631247A Synthetic Ecology Perspective: How Well Does Behavior of Model Organisms in the Laboratory Predict Microbial Activities in Natural Habitats?
Q34595561A hidden pitfall in the preparation of agar media undermines microorganism cultivability
Q34147200A survey on cultivable heterotrophic bacteria inhabiting a thermally unstratified water column in an Atlantic Rainforest lake.
Q99633749An approach to increase the success rate of cultivation of soil bacteria based on fluorescence-activated cell sorting
Q24619768As-yet-uncultivated oral bacteria: breadth and association with oral and extra-oral diseases
Q35602413Bacterial and fungal communities in a degraded ombrotrophic peatland undergoing natural and managed re-vegetation
Q26780417Bioluminescence assay for cell viability
Q33805662Cultivating yet-to-be cultivated microbes: the challenge continues
Q55370241Different Metabolomic Responses to Carbon Starvation between Light and Dark Conditions in the Purple Photosynthetic Bacterium, Rhodopseudomonas palustris.
Q41955022Draft Genome Sequence of Tomitella biformata AHU 1821T, Isolated from a Permafrost Ice Wedge in Alaska
Q33697510Ecological perspectives on microbes involved in N-cycling
Q35640340Effect of Probiotics/Prebiotics on Cattle Health and Productivity
Q57071056Emergent Properties of Microbial Activity in Heterogeneous Soil Microenvironments: Different Research Approaches Are Slowly Converging, Yet Major Challenges Remain
Q28080553Emerging concepts promising new horizons for marine biodiscovery and synthetic biology
Q92461166High proportions of bacteria and archaea across most biomes remain uncultured
Q35134168Identification and characterization of carboxyl esterases of gill chamber-associated microbiota in the deep-sea shrimp Rimicaris exoculata by using functional metagenomics
Q89489603Improved Isolation of Uncultured Anaerobic Bacteria using Medium Prepared with Separate Sterilization of Agar and Phosphate
Q35717714Increase in Bacterial Colony Formation from a Permafrost Ice Wedge Dosed with a Tomitella biformata Recombinant Resuscitation-Promoting Factor Protein.
Q26775404Individuality, phenotypic differentiation, dormancy and 'persistence' in culturable bacterial systems: commonalities shared by environmental, laboratory, and clinical microbiology
Q36095755Innovative Approaches Using Lichen Enriched Media to Improve Isolation and Culturability of Lichen Associated Bacteria
Q99572022Integration of absolute multi-omics reveals dynamic protein-to-RNA ratios and metabolic interplay within mixed-domain microbiomes
Q35060166Is the improvement of CF patients, hospitalized for pulmonary exacerbation, correlated to a decrease in bacterial load?
Q90374098Isolation of Previously Uncultured Slow-Growing Bacteria by Using a Simple Modification in the Preparation of Agar Media
Q35407852Isolation of a significant fraction of non-phototroph diversity from a desert Biological Soil Crust
Q35569594Isolation of microorganisms involved in reduction of crystalline iron(III) oxides in natural environments
Q36365313Keys to Cultivating Uncultured Microbes: Elaborate Enrichment Strategies and Resuscitation of Dormant Cells
Q38791327Low abundant soil bacteria can be metabolically versatile and fast growing
Q35743668Metabarcoding of the kombucha microbial community grown in different microenvironments
Q36068973Metagenomics and Bioinformatics in Microbial Ecology: Current Status and Beyond.
Q37016497Microbes in the Water Infrastructure: Underpinning Our Society
Q64102460Microbial Metabolism and Community Dynamics in Hydraulic Fracturing Fluids Recovered From Deep Hydrocarbon-Rich Shale
Q39014923Microbial resource utilization traits and trade-offs: implications for community structure, functioning, and biogeochemical impacts at present and in the future
Q90376461Model Microbial Consortia as Tools for Understanding Complex Microbial Communities
Q89547443Molecular assays to detect the presence and viability of Phytophthora ramorum and Grosmannia clavigera
Q92134295Novel bioactive natural products from bacteria via bioprospecting, genome mining and metabolic engineering
Q47778092Phosphate-Catalyzed Hydrogen Peroxide Formation from Agar, Gellan, and κ-Carrageenan and Recovery of Microbial Cultivability via Catalase and Pyruvate
Q27695721Pressure adaptation is linked to thermal adaptation in salt-saturated marine habitats
Q33806713Rediscovery of the microbial world in microbial ecology
Q33805728Resuscitation promoting factor (Rpf) from Tomitella biformata AHU 1821(T) promotes growth and resuscitates non-dividing cells.
Q35809539Shedding light on microbial dark matter: a TM6 bacterium as natural endosymbiont of a free-living amoeba
Q34672144The challenges of studying the anaerobic microbial world
Q33920202The combination of functional metagenomics and an oil-fed enrichment strategy revealed the phylogenetic diversity of lipolytic bacteria overlooked by the cultivation-based method.
Q34474989The dormant blood microbiome in chronic, inflammatory diseases
Q30224335The multi-omics promise in context: from sequence to microbial isolate
Q29616595The rebirth of culture in microbiology through the example of culturomics to study human gut microbiota
Q90705131Thermoanaerosceptrum fracticalcis gen. nov. sp. nov., a Novel Fumarate-Fermenting Microorganism From a Deep Fractured Carbonate Aquifer of the US Great Basin
Q28601184Wake me when it's over - Bacterial toxin-antitoxin proteins and induced dormancy

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