Impact of culture-independent studies on the emerging phylogenetic view of bacterial diversity.

scientific article

Impact of culture-independent studies on the emerging phylogenetic view of bacterial diversity. is …
instance of (P31):
review articleQ7318358
scholarly articleQ13442814

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P3181OpenCitations bibliographic resource ID337281
P932PMC publication ID107498
P698PubMed publication ID9733676

P2093author name stringN R Pace
P Hugenholtz
B M Goebel
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Specific ribosomal DNA sequences from diverse environmental settings correlate with experimental contaminantsQ32047548
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Detection and in situ identification of representatives of a widely distributed new bacterial phylumQ34435016
16S rRNA sequences reveal numerous uncultured microorganisms in a natural communityQ34570149
The RDP (Ribosomal Database Project).Q34624083
Phylogenetic diversity of the intestinal bacterial community in the termite Reticulitermes speratusQ35188625
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Phylogenetic diversity of subsurface marine microbial communities from the Atlantic and Pacific OceansQ35677017
16S rRNA sequences of uncultivated hot spring cyanobacterial mat inhabitants retrieved as randomly primed cDNAQ35689512
Recognition of chimeric small-subunit ribosomal DNAs composed of genes from uncultivated microorganisms.Q36052420
Phylogenetic analysis of the hyperthermophilic pink filament community in Octopus Spring, Yellowstone National Park.Q36056300
Effect of genome size and rrn gene copy number on PCR amplification of 16S rRNA genes from a mixture of bacterial speciesQ36688062
Identifying microbial diversity in the natural environment: a molecular phylogenetic approach.Q36802995
Effect of PCR template concentration on the composition and distribution of total community 16S rDNA clone librariesQ36862250
Verrucomicrobia div. nov., a new division of the bacteria containing three new species of ProsthecobacterQ36882454
Phylogenetic position of the menaquinone-containing acidophilic chemo-organotroph Acidobacterium capsulatumQ37886392
Novel anaerobic ultramicrobacteria belonging to the Verrucomicrobiales lineage of bacterial descent isolated by dilution culture from anoxic rice paddy soilQ39801905
A phylogenetic tree of 16S rRNA sequences from sulfate-reducing bacteria in a sandy marine sedimentQ39916124
Differential amplification of rRNA genes by polymerase chain reactionQ41960113
P433issue18
P407language of work or nameEnglishQ1860
P921main subjectphylogeneticsQ171184
bacterial diversityQ129941212
P304page(s)4765-4774
P577publication date1998-09-01
P1433published inJournal of BacteriologyQ478419
P1476titleImpact of culture-independent studies on the emerging phylogenetic view of bacterial diversity
P478volume180

Reverse relations

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Q35824881Identification of Microorganisms by High Resolution Tandem Mass Spectrometry with Accurate Statistical Significance
Q34232165Identification of bacteria in biofilm and bulk water samples from a nonchlorinated model drinking water distribution system: detection of a large nitrite-oxidizing population associated with Nitrospira spp
Q36392317Identification of bacteria on the surface of clinically infected and non-infected prosthetic hip joints removed during revision arthroplasties by 16S rRNA gene sequencing and by microbiological culture.
Q34041621Identification of candidate periodontal pathogens and beneficial species by quantitative 16S clonal analysis
Q34057334Identification of the bacterial microflora in dairy products by temporal temperature gradient gel electrophoresis.
Q33235504Identifying the dominant soil bacterial taxa in libraries of 16S rRNA and 16S rRNA genes
Q39680086Imbroglios of viral taxonomy: genetic exchange and failings of phenetic approaches
Q35223195Impact of single-cell genomics and metagenomics on the emerging view of extremophile "microbial dark matter".
Q35931896Improved Environmental Genomes via Integration of Metagenomic and Single-Cell Assemblies
Q39653368Improved culturability of soil bacteria and isolation in pure culture of novel members of the divisions Acidobacteria, Actinobacteria, Proteobacteria, and Verrucomicrobia.
Q33990922In situ detection, isolation, and physiological properties of a thin filamentous microorganism abundant in methanogenic granular sludges: a novel isolate affiliated with a clone cluster, the green non-sulfur bacteria, subdivision I.
Q30424103Incorporating 16S gene copy number information improves estimates of microbial diversity and abundance
Q33986730Increase in bacterial community diversity in subsurface aquifers receiving livestock wastewater input.
Q34106973Influence of DNA extraction method, 16S rRNA targeted hypervariable regions, and sample origin on microbial diversity detected by 454 pyrosequencing in marine chemosynthetic ecosystems.
Q31125815Influence of an oyster reef on development of the microbial heterotrophic community of an estuarine biofilm
Q51659679Influence of linear alkylbenzene sulfonate (LAS) on the structure of Alphaproteobacteria, Actinobacteria, and Acidobacteria communities in a soil microcosm.
Q33753544Influence of plant polymers on the distribution and cultivation of bacteria in the phylum Acidobacteria
Q33987145Influence of sulfide and temperature on species composition and community structure of hot spring microbial mats.
Q33224775Inoculation with the plant-growth-promoting rhizobacterium Azospirillum brasilense causes little disturbance in the rhizosphere and rhizoplane of maize (Zea mays).
Q26824017Insights into novel antimicrobial compounds and antibiotic resistance genes from soil metagenomes
Q34889744Interactions in the microbiome: communities of organisms and communities of genes
Q38915623Intranuclear verrucomicrobial symbionts and evidence of lateral gene transfer to the host protist in the termite gut.
Q35841234Intraspecific Variation in Microbial Symbiont Communities of the Sun Sponge, Hymeniacidon heliophila, from Intertidal and Subtidal Habitats
Q28602604Introducing BASE: the Biomes of Australian Soil Environments soil microbial diversity database
Q29614293Introducing DOTUR, a computer program for defining operational taxonomic units and estimating species richness
Q36453357Invariant community structure of soil bacteria in subtropical coniferous and broadleaved forests
Q24550286Investigation of candidate division TM7, a recently recognized major lineage of the domain Bacteria with no known pure-culture representatives
Q39750669Isolation and Characterization of Novel Psychrophilic, Neutrophilic, Fe-Oxidizing, Chemolithoautotrophic α- and γ- Proteobacteria from the Deep Sea
Q24680896Isolation and characterization of soil bacteria that define Terriglobus gen. nov., in the phylum Acidobacteria
Q37645177Isolation and molecular characterization of biofouling bacteria and profiling of quorum sensing signal molecules from membrane bioreactor activated sludge
Q31105604Isolation of antibiotics turbomycin a and B from a metagenomic library of soil microbial DNA
Q51184176Isolation of marine bacteria by in situ culture on media-supplemented polyurethane foam.
Q43017881Isolation of uncultivated anaerobic thermophiles from compost by supplementing cell extract of Geobacillus toebii in enrichment culture medium
Q33613723Isolation, characterization, and abundance of filamentous members of Caldilineae in activated sludge
Q38283576JTD special edition 'Hot Topics in COPD'-The microbiome in COPD.
Q30885664Laboratory cultivation of widespread and previously uncultured soil bacteria
Q91768337Land use change effects on diversity of soil bacterial, Acidobacterial and fungal communities in wetlands of the Sanjiang Plain, northeastern China
Q33721517Legionella species diversity in an acidic biofilm community in Yellowstone National Park
Q30392846Linking phylogeny to abundant ribotypes of community fingerprints: an exercise on the phylotypic responses to plant species, fertilisation and Lolium perenne ingression
Q41031659Liquid serial dilution is inferior to solid media for isolation of cultures representative of the phylum-level diversity of soil bacteria
Q31125819Long-chain N-acyltyrosine synthases from environmental DNA
Q43023823Lysis efficiency of standard DNA extraction methods for Halococcus spp. in an organic rich environment.
Q43704503MLST revisited: the gene-by-gene approach to bacterial genomics.
Q33235515Macroscopic streamer growths in acidic, metal-rich mine waters in north wales consist of novel and remarkably simple bacterial communities
Q57167372Managing the Microbial Community of Marine Fish Larvae: A Holistic Perspective for Larviculture
Q60933560Marine Sponges as Hot Spots: Genomic Insights and High-Resolution Visualization of an Abundant and Diverse Symbiotic Clade
Q33755903Marine microbial metagenomics: from individual to the environment
Q34087572MetaBinG: using GPUs to accelerate metagenomic sequence classification
Q36554944Metagenomic Classification Using an Abstraction Augmented Markov Model
Q28710421Metagenomic analysis of a southern maritime antarctic soil
Q35644620Metagenomic insights into the bioaerosols in the indoor and outdoor environments of childcare facilities
Q36227783Metagenomic mining for thermostable esterolytic enzymes uncovers a new family of bacterial esterases
Q33564344Metagenomic sequencing of an in vitro-simulated microbial community
Q28727588Metagenomics: Future of microbial gene mining
Q29617480Metagenomics: application of genomics to uncultured microorganisms
Q21144335Metaproteomics provides functional insight into activated sludge wastewater treatment
Q36423504Methane oxidation at 55 degrees C and pH 2 by a thermoacidophilic bacterium belonging to the Verrucomicrobia phylum
Q34609643Methods for estimating gene frequencies and detecting selection in bacterial populations.
Q33185275Microbial biodiversity: approaches to experimental design and hypothesis testing in primary scientific literature from 1975 to 1999.
Q34057632Microbial communities from methane hydrate-bearing deep marine sediments in a forearc basin
Q35087081Microbial communities in semi-consolidated carbonate sediments of the Southwest Indian Ridge
Q31128254Microbial community analysis of a coastal hot spring in Kagoshima, Japan, using molecular- and culture-based approaches
Q24550501Microbial community dynamics during production of the Mexican fermented maize dough pozol
Q39268478Microbial community structure of a freshwater system receiving wastewater effluent.
Q50113965Microbial dark matter investigations: how microbial studies transform biological knowledge and empirically sketch a logic of scientific discovery
Q33199042Microbial diversity and heterogeneity in sandy subsurface soils
Q32009610Microbial diversity in a hydrocarbon- and chlorinated-solvent-contaminated aquifer undergoing intrinsic bioremediation
Q33420290Microbial diversity of septic tank effluent and a soil biomat
Q28743264Microbial ecology of the dark ocean above, at, and below the seafloor
Q34991431Microbial population diversity in the urethras of healthy males and males suffering from nonchlamydial, nongonococcal urethritis
Q30682993Microbial populations associated with treatment of an industrial dye effluent in an anaerobic baffled reactor.
Q34781744Microbial volatile emissions as insect semiochemicals
Q38027052Microbiological and environmental issues in show caves
Q34855203Microbiology of diabetic foot infections: from Louis Pasteur to 'crime scene investigation'.
Q34566441Microbiome of the upper troposphere: species composition and prevalence, effects of tropical storms, and atmospheric implications
Q28305224Microbiota and pelvic inflammatory disease
Q34232157Microcolony cultivation on a soil substrate membrane system selects for previously uncultured soil bacteria
Q24655727Miniprimer PCR, a new lens for viewing the microbial world
Q39604610Molecular Characterisation and Co-cultivation of Bacterial Biofilm Communities Associated with the Mat-Forming Diatom Didymosphenia geminata
Q24669852Molecular analysis of fungal microbiota in samples from healthy human skin and psoriatic lesions
Q33231429Molecular analysis of the bacterial microbiota in the human stomach
Q33283537Molecular approaches: advantages and artifacts in assessing bacterial diversity
Q34097215Molecular characterization of novel red green nonsulfur bacteria from five distinct hot spring communities in Yellowstone National Park
Q33351274Molecular characterization of the bacterial communities in the different compartments of a full-scale reverse-osmosis water purification plant.
Q36931574Molecular detection and identification of Brettanomyces/Dekkera bruxellensis and Brettanomyces/Dekkera anomalus in spoiled wines
Q41923930Molecular epidemiology of infectious diseases
Q31105614Molecular evidence for a uniform microbial community in sponges from different oceans
Q33195720Molecular evidence for novel planctomycete diversity in a municipal wastewater treatment plant
Q37553034Molecular fingerprinting of dairy microbial ecosystems by use of temporal temperature and denaturing gradient gel electrophoresis.
Q33973436Molecular identification of microorganisms from endodontic infections
Q44193298Molecular methodology in determining vaginal flora in health and disease: its time has come.
Q34072164Molecular musings in microbial ecology and evolution
Q33966566Molecular phylogenetic evidence for noninvasive zoonotic transmission of Staphylococcus intermedius from a canine pet to a human
Q31074289Molecular profiling of rhizosphere microbial communities associated with healthy and diseased black spruce (Picea mariana) seedlings grown in a nursery
Q34864628Molecular studies neglect apparently gram-negative populations in the human gut microbiota
Q34975265Monitoring of the bacterial and fungal biodiversity and dynamics during Massa Medicata Fermentata fermentation
Q48155225Mosquito vector-associated microbiota: Metabarcoding bacteria and eukaryotic symbionts across habitat types in Thailand endemic for dengue and other arthropod-borne diseases.
Q35688502Most of the Dominant Members of Amphibian Skin Bacterial Communities Can Be Readily Cultured
Q34503629Mucin-bacterial interactions in the human oral cavity and digestive tract
Q33300047Mucosa-associated bacterial diversity in relation to human terminal ileum and colonic biopsy samples
Q34919094NaOH-debittering induces changes in bacterial ecology during table olives fermentation.
Q33987014Natural assemblages of marine proteobacteria and members of the Cytophaga-Flavobacter cluster consuming low- and high-molecular-weight dissolved organic matter
Q35994187Natural products from plant-associated microorganisms: distribution, structural diversity, bioactivity, and implications of their occurrence
Q36644883New developments in the study of the microbiota of raw-milk, long-ripened cheeses by molecular methods: the case of Grana Padano and Parmigiano Reggiano
Q28755936New feel for new phyla
Q31043353New lineage of filamentous, spore-forming, gram-positive bacteria from soil
Q40467833New molecular screening tools for analysis of free-living diazotrophs in soil
Q31041545New perspective on uncultured bacterial phylogenetic division OP11.
Q37044291New strategies for cultivation and detection of previously uncultured microbes
Q41820161New threshold and confidence estimates for terminal restriction fragment length polymorphism analysis of complex bacterial communities
Q26768510News in livestock research - use of Omics-technologies to study the microbiota in the gastrointestinal tract of farm animals
Q27312278Next generation sequencing to define prokaryotic and fungal diversity in the bovine rumen
Q35131529No evidence for a culturable bacterial tetrodotoxin producer in Pleurobranchaea maculata (Gastropoda: Pleurobranchidae) and Stylochoplana sp. (Platyhelminthes: Polycladida).
Q34159291Nontarget effects of foliar fungicide application on the rhizosphere: diversity of nifH gene and nodulation in chickpea field
Q42367290Novel Pathogens in Periodontal Microbiology
Q33988811Novel bacterial lineages at the (sub)division level as detected by signature nucleotide-targeted recovery of 16S rRNA genes from bulk soil and rice roots of flooded rice microcosms
Q34032530Novel kingdom-level eukaryotic diversity in anoxic environments
Q33213773Novel major bacterial candidate division within a municipal anaerobic sludge digester
Q24653203Novel microarray design strategy to study complex bacterial communities
Q36340376Novel soil-inhabiting clades fill gaps in the fungal tree of life
Q30844952Novelty and uniqueness patterns of rare members of the soil biosphere
Q36219857Nutrient availability shapes the microbial community structure in sugarcane bagasse compost-derived consortia
Q27001257Obesity as a consequence of gut bacteria and diet interactions
Q21562191Occupancy modeling, maximum contig size probabilities and designing metagenomics experiments
Q28729065Office space bacterial abundance and diversity in three metropolitan areas
Q38357954Oligonucleotide microarray for the study of functional gene diversity in the nitrogen cycle in the environment.
Q58725893Parallel Evolution of Genome Streamlining and Cellular Bioenergetics across the Marine Radiation of a Bacterial Phylum
Q35530706Partial genome assembly for a candidate division OP11 single cell from an anoxic spring (Zodletone Spring, Oklahoma).
Q33323397Particle size distribution of airborne microorganisms and pathogens during an Intense African dust event in the eastern Mediterranean
Q24604557Patterns and processes of microbial community assembly
Q30835560Peptide nucleic acid-mediated PCR clamping as a useful supplement in the determination of microbial diversity
Q26778229Perspective for Aquaponic Systems: "Omic" Technologies for Microbial Community Analysis
Q34183348PhiSiGns: an online tool to identify signature genes in phages and design PCR primers for examining phage diversity.
Q41882289PhyloSift: phylogenetic analysis of genomes and metagenomes
Q37054451PhyloToAST: Bioinformatics tools for species-level analysis and visualization of complex microbial datasets
Q33235517Phylogenetic analysis and in situ identification of bacteria community composition in an acidic Sphagnum peat bog
Q31058924Phylogenetic analysis of bacterial communities associated with ectoparasitic chewing lice of pocket gophers: a culture-independent approach
Q33311708Phylogenetic analysis of the archaeal community in an alkaline-saline soil of the former lake Texcoco (Mexico).
Q34986316Phylogenetic analysis on the soil bacteria distributed in karst forest
Q33415921Phylogenetic and chemical diversity of three chemotypes of bloom-forming lyngbya species (Cyanobacteria: Oscillatoriales) from reefs of southeastern Florida
Q33552134Phylogenetic and multivariate analyses to determine the effects of different tillage and residue management practices on soil bacterial communities
Q39488427Phylogenetic characterization and in situ detection of a Cytophaga-Flexibacter-Bacteroides phylogroup bacterium in Tuber borchii vittad. Ectomycorrhizal mycelium
Q40983410Phylogenetic characterization of 16S rRNA gene clones from deep-groundwater microorganisms that pass through 0.2-micrometer-pore-size filters
Q28754706Phylogenetic classification of short environmental DNA fragments
Q39763746Phylogenetic delineation of the novel phylum Armatimonadetes (former candidate division OP10) and definition of two novel candidate divisions.
Q30660629Phylogenetic diversity of bacteria associated with the marine sponge Rhopaloeides odorabile
Q34571607Phylogenetic diversity, localization, and cell morphologies of members of the candidate phylum TG3 and a subphylum in the phylum Fibrobacteres, recently discovered bacterial groups dominant in termite guts
Q28727593Phylogenetic profiling of bacterial community from two intimately located sites in Balramgari, North-East coast of India
Q30610369Phylogeny of microorganisms populating a thick, subaerial, predominantly lithotrophic biofilm at an extreme acid mine drainage site
Q21263040Phylum Verrucomicrobia representatives share a compartmentalized cell plan with members of bacterial phylum Planctomycetes
Q33224569Phylum- and class-specific PCR primers for general microbial community analysis
Q42372414Polycyclic Aromatic Hydrocarbon-Induced Changes in Bacterial Community Structure under Anoxic Nitrate Reducing Conditions
Q39484235Polyphasic study of the spatial distribution of microorganisms in Mexican pozol, a fermented maize dough, demonstrates the need for cultivation-independent methods to investigate traditional fermentations
Q30855884Polyphosphate kinase from activated sludge performing enhanced biological phosphorus removal
Q34333550Polytomy identification in microbial phylogenetic reconstruction
Q31406791Population structure and phylogenetic characterization of marine benthic Archaea in deep-sea sediments
Q53276204Potential human pathogenic bacteria in five hot springs in Eritrea revealed by next generation sequencing.
Q34720556Potential of a 16S rRNA-based taxonomic microarray for analyzing the rhizosphere effects of maize on Agrobacterium spp. and bacterial communities
Q33230037Predicting microbial species richness
Q34767490Prevalence of bacteria of division TM7 in human subgingival plaque and their association with disease
Q33960902Prevalence of corynebacterial 16S rRNA sequences in patients with bacterial and "nonbacterial" prostatitis.
Q33708503Prevalence of the Chloroflexi-related SAR202 bacterioplankton cluster throughout the mesopelagic zone and deep ocean
Q24675394Prokaryote diversity and taxonomy: current status and future challenges
Q33326107Prokaryotic diversity of a Tunisian multipond solar saltern
Q39730048Purification, gene cloning, gene expression, and mutants of Dps from the obligate anaerobe Porphyromonas gingivalis
Q33437401Pyramidobacter piscolens gen. nov., sp. nov., a member of the phylum 'Synergistetes' isolated from the human oral cavity
Q39006258Pyrosequencing based assessment of bacterial diversity in Turkish Rhipicephalus annulatus and Dermacentor marginatus ticks (Acari: Ixodidae).
Q21135543Pyrosequencing of antibiotic-contaminated river sediments reveals high levels of resistance and gene transfer elements
Q34639677Pyrosequencing reveals regional differences in fruit-associated fungal communities
Q34286514Quantification of bacterial species of the vaginal microbiome in different groups of women, using nucleic acid amplification tests
Q39983043Quantification of fungal abundance on cultural heritage using real time PCR targeting the β-actin gene
Q35720077Quantitative analysis of diverse Lactobacillus species present in advanced dental caries
Q35209174RNA preservation agents and nucleic acid extraction method bias perceived bacterial community composition
Q36119401RT-PCR-DGGE Analysis to Elucidate the Dominant Bacterial Species of Industrial Spanish-Style Green Table Olive Fermentations.
Q88930460Rapid Microbial Community Changes During Initial Stages of Pine Litter Decomposition
Q36049579Rapid screening for freshwater bacterial groups by using reverse line blot hybridization
Q34416826Recent advances in understanding the microbiology of the female reproductive tract and the causes of premature birth
Q24618658Recent application of metagenomic approaches toward the discovery of antimicrobials and other bioactive small molecules
Q33697614Reconstructing a herbivore's diet using a novel rbcL DNA mini-barcode for plants
Q35530184Recovery of as-yet-uncultured soil acidobacteria on dilute solid media.
Q41785029Recurring seasonal dynamics of microbial communities in stream habitats
Q33201542Reduction in diversity of the colonic mucosa associated bacterial microflora in patients with active inflammatory bowel disease
Q31036234Relationships between microbial community structure and soil processes under elevated atmospheric carbon dioxide
Q31125782Representative freshwater bacterioplankton isolated from Crater Lake, Oregon
Q37367036Responses of bacterial community structure and denitrifying bacteria in biofilm to submerged macrophytes and nitrate
Q42719344Rethinking sterile: the hospital microbiome
Q30387375Retracted: Metagenomic Human Repiratory Air in a Hospital Environment
Q36090048RevEcoR: an R package for the reverse ecology analysis of microbiomes
Q27324031Riverine Bacterial Communities Reveal Environmental Disturbance Signatures within the Betaproteobacteria and Verrucomicrobia
Q92508371Saccharibacteria (TM7) in the Human Oral Microbiome
Q37650275Scaffolding bacterial genomes and probing host-virus interactions in gut microbiome by proximity ligation (chromosome capture) assay
Q64940119Scalable methods for analyzing and visualizing phylogenetic placement of metagenomic samples.
Q30399744Search and discovery strategies for biotechnology: the paradigm shift
Q31058423Seasonal changes in an alpine soil bacterial community in the colorado rocky mountains
Q44170985Self-organizing maps: a tool to ascertain taxonomic relatedness based on features derived from 16S rDNA sequence
Q36633669Sequences, sequence clusters and bacterial species
Q33602734Simultaneous identification of two cyclohexanone oxidation genes from an environmental Brevibacterium isolate using mRNA differential display
Q33990411Simultaneous recovery of RNA and DNA from soils and sediments
Q28598269Single sample resolution of rare microbial dark matter in a marine invertebrate metagenome
Q33746437Size does matter: Application-driven approaches for soil metagenomics
Q34379533Small genomes and sparse metabolisms of sediment-associated bacteria from four candidate phyla
Q28742796Social evolution in multispecies biofilms
Q34274777Soil Acidobacterial 16S rRNA Gene Sequences Reveal Subgroup Level Differences between Savanna-Like Cerrado and Atlantic Forest Brazilian Biomes.
Q33985649Soil bacterial community shift correlated with change from forest to pasture vegetation in a tropical soil
Q90015802Soil bacterial diversity under conservation agriculture-based cereal systems in Indo-Gangetic Plains
Q31077093Soil fungal communities underneath willow canopies on a primary successional glacier forefront: rDNA sequence results can be affected by primer selection and chimeric data
Q31119296Soil microbial community structure across a thermal gradient following a geothermal heating event
Q33884297Spatial Heterogeneity of Bacteria: Evidence from Hot Composts by Culture-independent Analysis
Q39751882Spatial and temporal analysis of the microbial community in slow sand filters used for treating horticultural irrigation water
Q33707348Spatial distribution and stability of the eight microbial species of the altered schaedler flora in the mouse gastrointestinal tract
Q34114154Spatial distribution of total, ammonia-oxidizing, and denitrifying bacteria in biological wastewater treatment reactors for bioregenerative life support
Q33310417Spatial heterogeneity of bacterial populations in monomictic Lake Estanya (Huesca, Spain).
Q33199045Spatial heterogeneity of crenarchaeal assemblages within mesophilic soil ecosystems as revealed by PCR-single-stranded conformation polymorphism profiling
Q58728458Species-Associated Differences in the Below-Ground Microbiomes of Wild and Domesticated
Q28757510Sponge-associated microorganisms: evolution, ecology, and biotechnological potential
Q33278944Sponge-specific bacterial associations of the Mediterranean sponge Chondrilla nucula (Demospongiae, Tetractinomorpha).
Q22065630Status of the Microbial Census
Q29397720Structural and Functional Changes with Depth in Microbial Communities in a Tropical Malaysian Peat Swamp Forest
Q55011144Structure and co-occurrence patterns in microbial communities under acute environmental stress reveal ecological factors fostering resilience.
Q37314159Study of the ecology of fresh sausages and characterization of populations of lactic acid bacteria by molecular methods
Q30392209Studying the microbiology of the indoor environment
Q33304963Subsurface microbial diversity in deep-granitic-fracture water in Colorado
Q30855959Succession of bacterial community structure along the Changjiang River determined by denaturing gradient gel electrophoresis and clone library analysis
Q39219047Sulfate-reducing bacteria-dominated biofilms that precipitate ZnS in a subsurface circumneutral-pH mine drainage system.
Q24630710Surveying the microbiome of ants: comparing 454 pyrosequencing with traditional methods to uncover bacterial diversity
Q24669880Synergistes group organisms of human origin
Q33305039Synthetic libraries of tyrosine-derived bacterial metabolites
Q33259366Synthetic statistical approach reveals a high degree of richness of microbial eukaryotes in an anoxic water column
Q35023038Systematic identification of gene families for use as "markers" for phylogenetic and phylogeny-driven ecological studies of bacteria and archaea and their major subgroups
Q74360278Systematics and evolution of ruminal species of the genus Prevotella
Q98465430Targeted Cell Sorting Combined With Single Cell Genomics Captures Low Abundant Microbial Dark Matter With Higher Sensitivity Than Metagenomics
Q36771745Targeted capture in evolutionary and ecological genomics.
Q90391436Targeted isolation and cultivation of uncultivated bacteria by reverse genomics
Q36844256Targeted search for actinomycetes from nearshore and deep-sea marine sediments
Q90732893Taxonomic and Metabolic Incongruence in the Ancient Genus Streptomyces
Q33690936Technicalities and Glitches of Terminal Restriction Fragment Length Polymorphism (T-RFLP).
Q39486765Terminal restriction fragment length polymorphism analysis program, a web-based research tool for microbial community analysis
Q30767194Terminal restriction fragment length polymorphism data analysis for quantitative comparison of microbial communities
Q37014313The Dark Side of the Mushroom Spring Microbial Mat: Life in the Shadow of Chlorophototrophs. I. Microbial Diversity Based on 16S rRNA Gene Amplicons and Metagenomic Sequencing
Q26745998The Ecology of Acidobacteria: Moving beyond Genes and Genomes
Q90144997The Gut Microbiome and Mental Health: What Should We Tell Our Patients?: Le microbiote Intestinal et la Santé Mentale : que Devrions-Nous dire à nos Patients?
Q24804488The Microbial Rosetta Stone Database: a compilation of global and emerging infectious microorganisms and bioterrorist threat agents
Q47744771The Paradigms They Are a-Changin': past, present and future of PVC bacteria research
Q90400809The Phylogeny, Biodiversity, and Ecology of the Chloroflexi in Activated Sludge
Q37642606The Rh protein family: gene evolution, membrane biology, and disease association
Q39221913The Structure of Microbial Communities in Soil and the Lasting Impact of Cultivation
Q24678865The bacterial species dilemma and the genomic-phylogenetic species concept
Q34257126The canine oral microbiome
Q37564500The composition and stability of the vaginal microbiota of normal pregnant women is different from that of non-pregnant women
Q34127792The human oral microbiome
Q37111236The human vaginal bacterial biota and bacterial vaginosis.
Q34392525The influence of rickettsiologists on post-modern microbiology
Q35743863The microbiome and rheumatoid arthritis
Q35012395The microbiome of the upper airways: focus on chronic rhinosinusitis
Q38744345The midgut microbiota plays an essential role in sand fly vector competence for Leishmania major.
Q28755151The modern concept of the procaryote
Q24669622The origin and evolution of Archaea: a state of the art
Q24675381The promise of a DNA taxonomy
Q42093985The rapid identification of lactic acid bacteria present in Chilean winemaking processes using culture-independent analysis
Q35070280The rhizosphere selects for particular groups of acidobacteria and verrucomicrobia
Q36335897The rhizospheric microbial community structure and diversity of deciduous and evergreen forests in Taihu Lake area, China.
Q50134012The role of the gut microbiome in systemic inflammatory disease.
Q30849116The spectrum of microbiological agents causing pulmonary MALT-type lymphomas. A 16S rRNA-based analysis of microbial diversity
Q24679565The termite group I phylum is highly diverse and widespread in the environment
Q24644513The ultramicrobacterium "Elusimicrobium minutum" gen. nov., sp. nov., the first cultivated representative of the termite group 1 phylum
Q34663224The vaginal microbiome: new information about genital tract flora using molecular based techniques
Q34330998The variability of the 16S rRNA gene in bacterial genomes and its consequences for bacterial community analyses
Q38452172The world bacterial biogeography and biodiversity through databases: a case study of NCBI Nucleotide Database and GBIF Database
Q47754448Thermophilic bacterial communities inhabiting the microbial mats of "indifferent" and chalybeate (iron-rich) thermal springs: Diversity and biotechnological analysis
Q34939991Three genomes from the phylum Acidobacteria provide insight into the lifestyles of these microorganisms in soils
Q21563510Toward a census of bacteria in soil
Q33988197Trichloroethene reductive dehalogenase from Dehalococcoides ethenogenes: sequence of tceA and substrate range characterization
Q28652723Two distinct microbial communities revealed in the sponge Cinachyrella
Q26852265Understanding vaginal microbiome complexity from an ecological perspective
Q28768675Unexpected diversity and complexity of the Guerrero Negro hypersaline microbial mat
Q29622870UniFrac--an online tool for comparing microbial community diversity in a phylogenetic context
Q43972647Uniting the classification of cultured and uncultured bacteria and archaea using 16S rRNA gene sequences
Q35158497Unraveling the unseen players in the ocean - a field guide to water chemistry and marine microbiology
Q37453468Unusually High Archaeal Diversity in a Crystallizer Pond, Pomorie Salterns, Bulgaria, Revealed by Phylogenetic Analysis.
Q33281999Use of 16S rRNA gene based clone libraries to assess microbial communities potentially involved in anaerobic methane oxidation in a Mediterranean cold seep
Q24651284Use of attenuated total reflectance Fourier transform infrared spectroscopy to identify microbial metabolic products on carbonate mineral surfaces
Q34054095Use of the Verrucomicrobia-specific probe EUB338-III and fluorescent in situ hybridization for detection of "Candidatus Xiphinematobacter" cells in nematode hosts
Q35530614Using DNA-Stable Isotope Probing to Identify MTBE- and TBA-Degrading Microorganisms in Contaminated Groundwater.
Q27026086Vaginal microbiome and sexually transmitted infections: an epidemiologic perspective
Q34285005Vaginal microbiome: rethinking health and disease
Q28658329Verrucomicrobia are candidates for polysaccharide-degrading bacterioplankton in an arctic fjord of Svalbard
Q26775509Viruses, Other Pathogenic Microorganisms and Esophageal Cancer
Q33259718What is the extent of prokaryotic diversity?
Q33984739Wide distribution and diversity of members of the bacterial kingdom Acidobacterium in the environment
Q37552821Widespread occurrence of a novel division of bacteria identified by 16S rRNA gene sequences originally found in deep marine sediments
Q33310577pH gradient-induced heterogeneity of Fe(III)-reducing microorganisms in coal mining-associated lake sediments