A comparison of methods for total community DNA preservation and extraction from various thermal environments

scientific article published on 17 July 2008

A comparison of methods for total community DNA preservation and extraction from various thermal environments is …
instance of (P31):
scholarly articleQ13442814

External links are
P356DOI10.1007/S10295-008-0393-Y
P698PubMed publication ID18633656
P5875ResearchGate publication ID51408196

P2093author name stringCristina D Takacs-Vesbach
Kendra R Mitchell
P2860cites workEvaluation of extraction and purification methods for obtaining PCR-amplifiable DNA from compost for microbial community analysisQ43351647
Comparison of methods for total community DNA extraction and purification from compost.Q51102435
Empirical evaluation of preservation methods for faecal DNAQ57221601
Impact of culture-independent studies on the emerging phylogenetic view of bacterial diversity.Q24521497
Remarkable archaeal diversity detected in a Yellowstone National Park hot spring environmentQ24564814
Characterization of uncultivated prokaryotes: isolation and analysis of a 40-kilobase-pair genome fragment from a planktonic marine archaeonQ24684858
A molecular view of microbial diversity and the biosphereQ28235782
Candidatus Chloracidobacterium thermophilum: an aerobic phototrophic AcidobacteriumQ28237948
Finding the needles in the metagenome haystackQ28757389
Microvariation artifacts introduced by PCR and cloning of closely related 16S rRNA gene sequencesQ30660646
Optimization of terminal-restriction fragment length polymorphism analysis for complex marine bacterioplankton communities and comparison with denaturing gradient gel electrophoresisQ30746269
Sulfurihydrogenibium yellowstonense sp. nov., an extremely thermophilic, facultatively heterotrophic, sulfur-oxidizing bacterium from Yellowstone National Park, and emended descriptions of the genus Sulfurihydrogenibium, Sulfurihydrogenibium subterrQ31017074
New perspective on uncultured bacterial phylogenetic division OP11.Q31041545
Metagenomics and industrial applicationsQ33216319
DNA extraction procedure: a critical issue for bacterial diversity assessment in marine sedimentsQ33232059
Molecular approaches: advantages and artifacts in assessing bacterial diversityQ33283537
Exploring microbial diversity in volcanic environments: a review of methods in DNA extractionQ33286354
Efficient recovery of environmental DNA for expression cloning by indirect extraction methodsQ33498629
Evaluation and optimization of DNA extraction and purification procedures for soil and sediment samplesQ33985889
Quantification of bias related to the extraction of DNA directly from soilsQ33986189
Statistical analysis of denaturing gel electrophoresis (DGE) fingerprinting patternsQ35013348
DNA recovery from soils of diverse composition.Q35188380
Seasonal distributions of dominant 16S rRNA-defined populations in a hot spring microbial mat examined by denaturing gradient gel electrophoresisQ35199465
Tangential flow filtration and preliminary phylogenetic analysis of marine picoplanktonQ35741819
Quantitative cell lysis of indigenous microorganisms and rapid extraction of microbial DNA from sedimentQ36055603
Identification and localization of bacterial endosymbionts in hydrothermal vent taxa with symbiont-specific polymerase chain reaction amplification and in situ hybridization techniquesQ38566698
Molecular phylogenetic exploration of bacterial diversity in a Bakreshwar (India) hot spring and culture of Shewanella-related thermophilesQ39788908
Transformation of Bacillus subtilis by DNA bound on montmorillonite and effect of DNase on the transforming ability of bound DNA.Q39893986
Changes in Bacteria Recoverable from Subsurface Volcanic Rock Samples during Storage at 4 degrees C.Q39915673
DNA amplification to enhance detection of genetically engineered bacteria in environmental samples.Q39920416
Liquid serial dilution is inferior to solid media for isolation of cultures representative of the phylum-level diversity of soil bacteriaQ41031659
Determination of microbial diversity in environmental samples: pitfalls of PCR-based rRNA analysisQ41694742
Volcanic calderas delineate biogeographic provinces among Yellowstone thermophiles.Q42004218
Lysis efficiency of standard DNA extraction methods for Halococcus spp. in an organic rich environment.Q43023823
Microbial diversity at 83 degrees C in Calcite Springs, Yellowstone National Park: another environment where the Aquificales and "Korarchaeota" coexistQ43027370
P433issue10
P304page(s)1139-1147
P577publication date2008-07-17
P1433published inJournal of Industrial Microbiology & BiotechnologyQ1709847
P1476titleA comparison of methods for total community DNA preservation and extraction from various thermal environments
P478volume35

Reverse relations

cites work (P2860)
Q64966980A comparison of different methods for preserving plant molecular materials and the effect of degraded DNA on ddRAD sequencing.
Q35055973An analysis of geothermal and carbonic springs in the western United States sustained by deep fluid inputs.
Q33939859Archaeal and bacterial diversity in hot springs on the Tibetan Plateau, China
Q33770456Bacterial community structure along moisture gradients in the parafluvial sediments of two ephemeral desert streams
Q34031608Characterization of growing bacterial populations in McMurdo Dry Valley soils through stable isotope probing with (18) O-water
Q46322863Decoupled responses of soil bacteria and their invertebrate consumer to warming, but not freeze-thaw cycles, in the Antarctic Dry Valleys
Q34414849Do diet and taxonomy influence insect gut bacterial communities?
Q34793015Factors Controlling Soil Microbial Biomass and Bacterial Diversity and Community Composition in a Cold Desert Ecosystem: Role of Geographic Scale
Q48090876Genomic inference of the metabolism of cosmopolitan subsurface Archaea, Hadesarchaea
Q35257520Improved group-specific primers based on the full SILVA 16S rRNA gene reference database
Q34633850Improved methods for capture, extraction, and quantitative assay of environmental DNA from Asian bigheaded carp (Hypophthalmichthys spp.).
Q42233538Influence of anode surface chemistry on microbial fuel cell operation.
Q90003029Isotopic and genetic methods reveal the role of the gut microbiome in mammalian host essential amino acid metabolism
Q46398413Leaf endophytic fungus interacts with precipitation to alter belowground microbial communities in primary successional dunes
Q58728857Local and Regional Scale Heterogeneity Drive Bacterial Community Diversity and Composition in a Polar Desert
Q28070125Metagenomics of Thermophiles with a Focus on Discovery of Novel Thermozymes
Q31119306Microbial Community Responses to Increased Water and Organic Matter in the Arid Soils of the McMurdo Dry Valleys, Antarctica
Q36180811Microbial community analysis of pH 4 thermal springs in Yellowstone National Park
Q35945342Nutrient treatments alter microbial mat colonization in two glacial meltwater streams from the McMurdo Dry Valleys, Antarctica
Q36096309Patterns of bacterial biodiversity in the glacial meltwater streams of the McMurdo Dry Valleys, Antarctica
Q39021410Primary productivity as a control over soil microbial diversity along environmental gradients in a polar desert ecosystem.
Q33921571Regime shift in sandy beach microbial communities following Deepwater Horizon oil spill remediation efforts
Q64059907Robust sampling and preservation of DNA for microbial community profiling in field experiments
Q36298512Salmonid alphavirus infection causes skin dysbiosis in Atlantic salmon (Salmo salar L.) post-smolts
Q38639862Salt marsh bacterial communities before and after the Deepwater Horizon oil spill
Q30773576Soil microbial responses to increased moisture and organic resources along a salinity gradient in a polar desert
Q89601667Specialization of mucosal immunoglobulins in pathogen control and microbiota homeostasis occurred early in vertebrate evolution
Q35713353Topographical Mapping of the Rainbow Trout (Oncorhynchus mykiss) Microbiome Reveals a Diverse Bacterial Community with Antifungal Properties in the Skin
Q40819726Use of Serial Quantitative PCR of the vapA Gene of Rhodococcus equi in Feces for Early Detection of R. equi Pneumonia in Foals

Search more.