Identification of cyanobacterial non-coding RNAs by comparative genome analysis

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Identification of cyanobacterial non-coding RNAs by comparative genome analysis is …
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scholarly articleQ13442814

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P6179Dimensions Publication ID1047514503
P356DOI10.1186/GB-2005-6-9-R73
P3181OpenCitations bibliographic resource ID2813185
P932PMC publication ID1242208
P698PubMed publication ID16168080
P5875ResearchGate publication ID7595804

P50authorJörg VogelQ1107809
Hanspeter HerzelQ30004496
Ilka M AxmannQ41048304
P2093author name stringStefan Kohl
Wolfgang R Hess
Philip Kensche
P2860cites workGenome sequence of the cyanobacterium Prochlorococcus marinus SS120, a nearly minimal oxyphototrophic genomeQ21994448
Genome divergence in two Prochlorococcus ecotypes reflects oceanic niche differentiationQ21994463
Accelerated evolution associated with genome reduction in a free-living prokaryoteQ21999766
Non–coding RNA genes and the modern RNA worldQ22122367
The genome of a motile marine SynechococcusQ22122505
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6S RNA is a widespread regulator of eubacterial RNA polymerase that resembles an open promoterQ24537417
Transcriptome analysis of Escherichia coli using high-density oligonucleotide probe arraysQ24537785
Regulation of the vitamin B12 metabolism and transport in bacteria by a conserved RNA structural elementQ24540210
Prochlorococcus, a marine photosynthetic prokaryote of global significanceQ24548557
Fast and reliable prediction of noncoding RNAsQ24556645
The small RNA, DsrA, is essential for the low temperature expression of RpoS during exponential growth in Escherichia coliQ24562141
Activation of alpha-toxin translation in Staphylococcus aureus by the trans-encoded antisense RNA, RNAIIIQ24598365
Identification of novel small RNAs using comparative genomics and microarraysQ24601229
RNomics in Escherichia coli detects new sRNA species and indicates parallel transcriptional output in bacteriaQ24641843
Control of rRNA transcription in Escherichia coliQ24651370
tmRNAs that encode proteolysis-inducing tags are found in all known bacterial genomes: A two-piece tmRNA functions in CaulobacterQ24680151
Basic local alignment search toolQ25938991
Global analysis of small RNA and mRNA targets of HfqQ28184898
Novel small RNA-encoding genes in the intergenic regions of Escherichia coliQ28205853
Thiamine derivatives bind messenger RNAs directly to regulate bacterial gene expressionQ28212624
Microfossils of the Early Archean Apex chert: new evidence of the antiquity of lifeQ28215389
Computational identification of noncoding RNAs in E. coli by comparative genomicsQ28216022
Coenzyme B12 riboswitches are widespread genetic control elements in prokaryotesQ28236998
The small RNA chaperone Hfq and multiple small RNAs control quorum sensing in Vibrio harveyi and Vibrio choleraeQ28270975
Diverse mechanisms for regulating ribosomal protein synthesis in Escherichia coliQ28286306
Measuring genome evolutionQ28776160
The small RNA regulators of Escherichia coli: roles and mechanisms*Q29618536
The bacterial Sm-like protein Hfq: a key player in RNA transactionsQ29620062
The expanding world of small RNAs in the hyperthermophilic archaeon Sulfolobus solfataricusQ33212636
Two-piece tmRNA in cyanobacteria and its structural analysisQ33833661
RNA secondary structure and translation inhibition: analysis of mutants in the rplJ leaderQ33939697
Consensus folding of aligned sequences as a new measure for the detection of functional RNAs by comparative genomicsQ34341458
The secondary structure of the protein L1 binding region of ribosomal 23S RNA. Homologies with putative secondary structures of the L11 mRNA and of a region of mitochondrial 16S rRNA.Q35699787
6S RNA function enhances long-term cell survivalQ35892783
Attenuation and processing of RNA from the rplJL--rpoBC transcription unit of Escherichia coliQ36392992
The Drosophila micropia retrotransposon encodes a testis-specific antisense RNA complementary to reverse transcriptaseQ36647762
Independent evolution of the prochlorophyte and green plant chlorophyll a/b light-harvesting proteins.Q37090052
Ribosomal genes in Escherichia coliQ38171483
Physiology and molecular phylogeny of coexisting Prochlorococcus ecotypesQ39265944
Regulation of agr-dependent virulence genes in Staphylococcus aureus by RNAIII from coagulase-negative staphylococci.Q39569314
ConStruct: a tool for thermodynamic controlled prediction of conserved secondary structureQ39729402
Clade-specific 16S ribosomal DNA oligonucleotides reveal the predominance of a single marine Synechococcus clade throughout a stratified water column in the Red Sea.Q39750786
Experimental and computational analysis of transcriptional start sites in the cyanobacterium Prochlorococcus MED4.Q39758764
Transcription of glutamine synthetase genes (glnA and glnN) from the cyanobacterium Synechocystis sp. strain PCC 6803 is differently regulated in response to nitrogen availabilityQ39845369
Transcription frequency modulates the efficiency of an attenuator preceding the rpoBC RNA polymerase genes of Escherichia coli: possible autogenous controlQ40534265
Antisense RNA control in bacteria, phages, and plasmidsQ40573014
Expression of a family of psbA genes encoding a photosystem II polypeptide in the cyanobacterium Anacystis nidulans R2.Q42154558
Multiple evolutionary origins of prochlorophytes within the cyanobacterial radiationQ42617718
Compilation of all genes encoding bacterial two-component signal transducers in the genome of the cyanobacterium, Synechocystis sp. strain PCC 6803.Q42653032
A novel small stable RNA, 6Sa RNA, from the cyanobacterium Synechococcus sp. strain PCC6301.Q48041487
A small, stable RNA induced by oxidative stress: role as a pleiotropic regulator and antimutatorQ48047346
The chromosomal location of genes for elongation factor Tu and ribosomal protein S10 in the cyanobacterium Spirulina platensis provides clues to the ancestral organization of the str and S10 operons in prokaryotesQ48093975
Unique origin and lateral transfer of prokaryotic chlorophyll-b and chlorophyll-d light-harvesting systemsQ48174099
A developmentally regulated gvpABC operon is involved in the formation of gas vesicles in the cyanobacterium Calothrix 7601.Q48352676
Prediction of transcription terminators in bacterial genomes.Q52108947
Characterization of Genes Encoding Multi-domain Proteins in the Genome of the Filamentous Nitrogen-fixing Cyanobacterium Anabaena sp. Strain PCC 7120Q57010723
Improved method for the isolation of RNA from plant tissuesQ69001095
Antitermination of E. coli rRNA transcription is caused by a control region segment containing lambda nut-like sequencesQ72396728
Protein L4 of the E. coli ribosome regulates an eleven gene r protein operonQ72615252
Expression of the psbA gene in the marine oxyphotobacteria Prochlorococcus sppQ77502064
P433issue9
P407language of work or nameEnglishQ1860
P921main subjectCyanobacteriaQ93315
P304page(s)R73
P577publication date2005-08-17
P1433published inGenome BiologyQ5533480
P1476titleIdentification of cyanobacterial non-coding RNAs by comparative genome analysis
P478volume6

Reverse relations

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