Control of rRNA transcription in Escherichia coli

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Control of rRNA transcription in Escherichia coli is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1128/MR.59.4.623-645.1995
P932PMC publication ID239391
P698PubMed publication ID8531889

P2093author name stringC Condon
C L Squires
C Squires
P2860cites workThe organization and expression of essential transcription translation component genes in the extremely thermophilic eubacterium Thermotoga maritimaQ43016545
Sequence-specific recognition of RNA hairpins by bacteriophage antiterminators requires a conserved arginine-rich motifQ43418894
Functional characteristics of the rrnD promoters of Escherichia coliQ43541838
The stringent response in Streptomyces coelicolor A3(2)Q43580459
Two Compounds implicated in the Function of the RC Gene of Escherichia coliQ43606324
Processing and decay of RNA in Escherichia coli: the chicken and egg problemQ43608454
The nut site of bacteriophage lambda is made of RNA and is bound by transcription antitermination factors on the surface of RNA polymeraseQ43800197
FIS-dependent trans-activation of tRNA and rRNA operons of Escherichia coliQ43828414
NusG, a new Escherichia coli elongation factor involved in transcriptional antitermination by the N protein of phage lambdaQ43836899
Developmental regulation of stage-specific ribosome populations in PlasmodiumQ44147309
Transcription-dependent competition for a host factor: the function and optimal sequence of the phage lambda boxA transcription antitermination signal.Q44453257
Modulation of RNA polymerase specificity by ppGppQ44454056
Assembly of transcription elongation complexes containing the N protein of phage lambda and the Escherichia coli elongation factors NusA, NusB, NusG, and S10Q44477196
Host factor requirements for processive antitermination of transcription and suppression of pausing by the N protein of bacteriophage lambdaQ44680057
The control of ribonucleic acid synthesis in Escherichia coli. IV. Relevance of unusual phosphorylated compounds from amino acid-starved stringent strainsQ44691182
Recognition of boxA antiterminator RNA by the E. coli antitermination factors NusB and ribosomal protein S10Q44700986
Requirement for E. coli NusG protein in factor-dependent transcription terminationQ44708702
Mutagenesis and functional analysis of the Escherichia coli tRNALeu1 promoterQ45082937
Potential binding sites of the trans-activator FIS are present upstream of all rRNA operons and of many but not all tRNA operonsQ45155032
Assembly of transcriptionally active RNA polymerase I initiation factor SL1 from recombinant subunits.Q45967728
Assembly of alternative multiprotein complexes directs rRNA promoter selectivityQ46086565
Feedback regulation of rRNA synthesis. A mutational alteration in the anti-Shine-Dalgarno region of the 16 S rRNA gene abolishes regulationQ46088932
Pausing and attenuation of in vitro transcription in the rrnB operon of E. coliQ46611454
Feedback regulation of rRNA synthesis in Escherichia coli. Requirement for initiation factor IF2.Q46658860
Dependency on medium and temperature of cell size and chemical composition during balanced grown of Salmonella typhimuriumQ47434584
Formation of ppGpp in a relaxed and stringent strain of Escherichia coli during diauxie lag.Q47730209
On the regulation of guanosine tetraphosphate levels in stringent and relaxed strains of Escherichia coliQ47745706
Stage-specific ribosomal RNA expression switches during sporozoite invasion of hepatocytesQ47885910
Cloning, nucleotide sequence, and transcriptional analysis of the nusG gene of Streptomyces coelicolor A3(2), which encodes a putative transcriptional antiterminatorQ48074569
Sequence analysis of the ribosomal RNA operon of the Lyme disease spirochete, Borrelia burgdorferiQ48079905
The nusG gene of Streptomyces griseus: cloning of the gene and analysis of the A-factor binding properties of the gene productQ48082111
Organization and nucleotide sequence of the secE-nusG region of Streptomyces griseus.Q48085678
Mechanisms of upstream activation of the rrnD promoter P1 of Escherichia coliQ48106517
The structure and organization of the 16S ribosomal RNA gene from the archaebacterium Thermoplasma acidophilumQ48308102
Spacer promoters are essential for efficient enhancement of X. laevis ribosomal transcriptionQ48369128
G inversion in bacteriophage Mu DNA is stimulated by a site within the invertase gene and a host factorQ48377448
Genetically separable functional elements mediate the optimal expression and stringent regulation of a bacterial tRNA geneQ48381701
The major promoter element of rRNA transcription in yeast lies 2 kb upstreamQ48385484
Differential stringent control of the tandem E. coli ribosomal RNA promoters from the rrnA operon expressed in vivo in multicopy plasmidsQ48399255
Identification of two new promoters probably involved in the transcription of a ribosomal RNA gene of Escherichia coliQ48399559
Growth-rate-dependent regulation of ribosome synthesis in E. coli: expression of the lacZ and galK genes fused to ribosomal promotersQ48408423
Transcription of the E. coli tufB gene: cotranscription with four tRNA genes and inhibition by guanosine-5'-diphosphate-3'-diphosphateQ48410981
Formation of guanosine tetraphosphate (magic spot I) in homologous and heterologous systemsQ48638111
Hin-mediated site-specific recombination requires two 26 bp recombination sites and a 60 bp recombinational enhancerQ50205588
Role of a hisU gene in the control of stable RNA synthesis in Salmonella typhimuriumQ50213859
Polarity in relaxed strains of Salmonella typhimuriumQ50247399
Toxic effects of high levels of ppGpp in Escherichia coli are relieved by rpoB mutationsQ50795602
Characterization of RNA and DNA synthesis in Escherichia coli strains devoid of ppGppQ52395949
The promoter-proximal rDNA terminator augments initiation by preventing disruption of the stable transcription complex caused by polymerase read-in.Q52487212
A direct effect of guanosine tetraphosphate on pausing of Escherichia coli RNA polymerase during RNA chain elongation.Q52739563
Contributions of transcriptional and post-transcriptional mechanisms to the regulation of c-myc expression in mouse erythroleukemia cellsQ68781808
DNA determinants of rRNA synthesis in E. coli: growth rate dependent regulation, feedback inhibition, upstream activation, antiterminationQ68949596
Ribosomal RNA operon anti-termination. Function of leader and spacer region box B-box A sequences and their conservation in diverse micro-organismsQ69115064
Metabolism of Guanosine Tetraphosphate in Escherichia coliQ69209993
Accumulation and turnover of guanosine tetraphosphate in Escherichia coliQ69230376
RNA overproducing revertants of an alanyl-tRNA synthetase mutant of Escherichia coliQ69231786
Protein sequences encoded by the relA and the spoT genes of Escherichia coli are interrelatedQ69349178
Amino Acid Control of Messenger Ribonucleic Acid Synthesis in Bacillus subtilisQ69372941
The Xenopus ribosomal gene enhancers bind an essential polymerase I transcription factor, xUBFQ69417106
Residual guanosine 3',5'-bispyrophosphate synthetic activity of relA null mutants can be eliminated by spoT null mutationsQ70119536
Escherichia coli ppGpp synthetase II activity requires spoTQ70119540
Feedback regulation of RNA polymerase subunit synthesis after the conditional overproduction of RNA polymerase in Escherichia coliQ70146684
[A case of overlapping reading frames in Escherichia coli]Q70147602
Positive involvement of ppGpp in derepression of the nif operon in Klebsiella pneumoniaeQ70241263
Relaxed mutants of Escherichia coli RNA polymeraseQ70281688
Promoter selectivity of Escherichia coli RNA polymerase. Differential stringent control of the multiple promoters from ribosomal RNA and protein operonsQ70314834
Relaxed mutant of Saccharomyces cerevisiae: proper maturation of ribosomal RNA in absence of protein synthesisQ70373248
Genetic studies on the beta subunit of Escherichia coli RNA polymerase. VI. A redundant region in the beta polypeptideQ70383707
Genetic analysis of Saccharomyces cerevisiae SY 15 relaxed mutantQ70390731
Elongation factor NusG interacts with termination factor rho to regulate termination and antitermination of transcriptionQ70535996
The nusA gene protein of Escherichia coli. Its identification and a demonstration that it interacts with the gene N transcription anti-termination protein of bacteriophage lambdaQ70552281
The Fis protein: it's not just for DNA inversion anymoreQ70683670
Genetic studies on the beta subunit of Escherichia coli RNA polymerase. I. The effect of known, single amino acid substitutions in an essential proteinQ71478445
Functioning of spo T gene product in Bacillus subtilis cellsQ71595926
Isolated P2 RRNA Promoters of Escherichia coli are Strong Promoters that are Subject to Stringent ControlQ71651554
Determination of intrinsic transcription termination efficiency by RNA polymerase elongation rateQ71658706
Simple downshift and resulting lack of correlation between ppGpp pool size and ribonucleic acid accumulationQ36763271
Cold-sensitive Mutations in Salmonella typhimurium Which Affect Ribosome SynthesisQ36815298
Termination efficiency at rho-dependent terminators depends on kinetic coupling between RNA polymerase and rhoQ36841147
An RNA polymerase I enhancer in Saccharomyces cerevisiaeQ36915611
The Enzymic Mechanism of Guanosine 5′, 3′-Polyphosphate SynthesisQ37023168
Synthesis of ribosomes in Saccharomyces cerevisiaeQ37055496
News from the nucleolus: rRNA gene expressionQ37200698
Effects of guanosine tetraphosphate, guanosine pentaphosphate, and beta-gamma methylenyl-guanosine pentaphosphate on gene expression of Escherichia coli in vitroQ37428200
Localization of the stringent protein of Escherichia coli on the 50S ribosomal subunitQ37434525
Carbon starvation and growth rate-dependent regulation of the Escherichia coli ribosomal RNA promoters: differential control of dual promotersQ37512399
Antitermination by both the promoter and the leader regions of an Escherichia coli ribosomal RNA operonQ37525658
Defective antitermination of rRNA transcription and derepression of rRNA and tRNA synthesis in the nusB5 mutant of Escherichia coliQ37527378
Localization of the intrinsically bent DNA region upstream of the E.coli rrnB P1 promoterQ37586347
Feedback regulation of rRNA and tRNA synthesis and accumulation of free ribosomes after conditional expression of rRNA genesQ37677995
Relationship between protein synthesis and concentrations of charged and uncharged tRNATrp in Escherichia coli.Q37700107
Antitermination mechanisms in rRNA operons of Escherichia coliQ38167285
FIS and RNA polymerase holoenzyme form a specific nucleoprotein complex at a stable RNA promoterQ38296889
A quaternary transcription termination complex. Reciprocal stabilization by Rho factor and NusG proteinQ38302602
Factor independent activation of rrnB P1. An "extended" promoter with an upstream element that dramatically increases promoter strengthQ38311271
Purification and molecular cloning of a butyrolactone autoregulator receptor from Streptomyces virginiaeQ38331055
The mechanism of action of ppGpp on rRNA synthesis in vitroQ39107163
Tandem promoters direct E. coli ribosomal RNA synthesisQ39670137
Ribosomal protein alterations in thiostrepton- and Micrococcin-resistant mutants of Bacillus subtilisQ39677485
Transcription of cloned eukaryotic ribosomal RNA genesQ39740479
The effects of a tryptophan-histidine deficiency in a mutant of Escherichia coliQ39805829
Escherichia coli NusG protein stimulates transcription elongation rates in vivo and in vitroQ39835920
rRNA operon multiplicity in Escherichia coli and the physiological implications of rrn inactivationQ39837636
DNA binding and bending are necessary but not sufficient for Fis-dependent activation of rrnB P1.Q39925452
The RNA chain elongation rate in Escherichia coli depends on the growth rateQ39931855
Involvement of Fis protein in replication of the Escherichia coli chromosomeQ39933054
rRNA gene organization in the Lyme disease spirochete, Borrelia burgdorferiQ39934532
FIS-dependent trans activation of stable RNA operons of Escherichia coli under various growth conditionsQ39934971
An unusual correlation between ppGpp pool size and rate of ribosome synthesis during partial pyrimidine starvation of Escherichia coliQ39939035
Identification of the gene encoding transcription factor NusG of Thermus thermophilusQ39940063
ClpB is the Escherichia coli heat shock protein F84.1.Q39942271
Lack of accumulation of unusual guanosine nucleotides upon amino acid starvation of two eukaryotic organismsQ68517163
NusA contacts nascent RNA in Escherichia coli transcription complexesQ71689285
Changes in conserved region 3 of Escherichia coli sigma 70 mediate ppGpp-dependent functions in vivoQ71751617
Functional heterogeneity of Escherichia coli ribonucleic acid polymerase holoenzymeQ72135422
Antitermination of E. coli rRNA transcription is caused by a control region segment containing lambda nut-like sequencesQ72396728
The transcriptional activator protein FIS: DNA interactions and cooperative interactions with RNA polymerase at the Escherichia coli rrnB P1 promoterQ72518078
Effects of guanosine 3',5'-bisdiphosphate (ppGpp) on rate of transcription elongation in isoleucine-starved Escherichia coliQ72526340
Insertions of Tn10 into an E. coli ribosomal RNA operon are incompletely polarQ72615235
A tRNATyr promoter with an altered in vitro response to ppGppQ72620942
Stringent control of RNA synthesis in the absence of guanosine 5‘-diphosphate-3‘-diphosphateQ72627123
Characterization of the components of reconstituted Saccharomyces cerevisiae RNA polymerase I transcription complexesQ72631639
Transcriptional mapping of plasmid pKK3535. Quantitation of the effect of guanosine tetraphosphate on binding to the rrnB promoters and a lambda promoter with sequence homologies in the CII binding regionQ72644787
Correlation between RNA synthesis and basal level guanosine 5‘-diphosphate 3‘-diphosphate in relaxed mutants of Escherichia coliQ72649870
Functional interactions between translation, transcription and ppGpp in growing Escherichia coliQ72697137
Expression of rRNA and tRNA genes in Escherichia coli: evidence for feedback regulation by products of rRNA operonsQ72705044
Distribution in the genus Streptomyces of a homolog to nusG, a gene encoding a transcriptional antiterminatorQ72874581
Interaction of the sigma factor and the nusA gene protein of E. coli with RNA polymerase in the initiation-termination cycle of transcriptionQ72894020
Codon specific, tRNA dependent in vitro synthesis of ppGpp and pppGppQ79823384
Nucleolar transcription factor hUBF contains a DNA-binding motif with homology to HMG proteinsQ24307868
Elongin (SIII): A Multisubunit Regulator of Elongation by RNA Polymerase IIQ24336681
Synthesis of Guanosine Tetra- and Pentaphosphate Requires the Presence of a Codon-Specific, Uncharged Transfer Ribonucleic Acid in the Acceptor Site of RibosomesQ24564295
Activation of mammalian ribosomal gene transcription requires phosphorylation of the nucleolar transcription factor UBFQ24626533
Stringent response of Bacillus stearothermophilus: evidence for the existence of two distinct guanosine 3',5'-polyphosphate synthetasesQ24676271
The molecular structure of wild-type and a mutant Fis protein: relationship between mutational changes and recombinational enhancer function or DNA bindingQ27655580
RRN6 and RRN7 encode subunits of a multiprotein complex essential for the initiation of rDNA transcription by RNA polymerase I in Saccharomyces cerevisiaeQ27934152
Diverse mechanisms for regulating ribosomal protein synthesis in Escherichia coliQ28286306
Functional Cooperativity Between Transcription Factors UBF1 and SL1 Mediates Human Ribosomal RNA SynthesisQ28297909
Function of the growth-regulated transcription initiation factor TIF-IA in initiation complex formation at the murine ribosomal gene promoterQ28507935
Molecular cloning of an essential subunit of RNA polymerase II elongation factor SIIIQ28565868
The TATA-binding protein and associated factors are integral components of the RNA polymerase I transcription factor, SL1Q28611539
Anti-termination of transcription within the long terminal repeat of HIV-1 by tat gene productQ29615049
Depletion of functional ribosomal RNA operons in Escherichia coli causes increased expression of the remaining intact copiesQ30448490
Mapping the cAMP receptor protein contact site on the alpha subunit of Escherichia coli RNA polymeraseQ30796720
Mutational analysis of a prokaryotic recombinational enhancer element with two functionsQ33559983
NusA protein is necessary and sufficient in vitro for phage lambda N gene product to suppress a rho-independent terminator placed downstream of nutL.Q33566502
Isolation of the gene encoding the Hin recombinational enhancer binding proteinQ33574350
Guanosine 3'-diphosphate 5'-diphosphate is not required for growth rate-dependent control of rRNA synthesis in Escherichia coliQ33701331
Intragenic pausing and anti-sense transcription within the murine c-myc locusQ33880694
Comparison of the expression of the seven ribosomal RNA operons in Escherichia coliQ33938532
Control of Transcription TerminationQ34050155
Deletion of a ribosomal ribonucleic acid operon in Escherichia coliQ34149309
Influence of amino acid starvation on guanosine 5'-diphosphate 3'-diphosphate basal-level synthesis in Escherichia coliQ34160927
Rigorous pattern-recognition methods for DNA sequences. Analysis of promoter sequences from Escherichia coliQ34194730
MSI and MSII made on ribosome in idling step of protein synthesisQ34212514
NusG is required to overcome a kinetic limitation to Rho function at an intragenic terminatorQ34258875
Organization of rRNA structural genes in the archaebacterium Thermoplasma acidophilumQ34280213
Domain organization of RNA polymerase alpha subunit: C-terminal 85 amino acids constitute a domain capable of dimerization and DNA binding.Q34334031
A third recognition element in bacterial promoters: DNA binding by the alpha subunit of RNA polymeraseQ34345517
Promoter architecture in the flagellar regulon of Bacillus subtilis: high-level expression of flagellin by the sigma D RNA polymerase requires an upstream promoter elementQ34481271
Analysis of nutR, a site required for transcription antitermination in phage lambdaQ34635375
Stringent control and growth-rate-dependent control have nonidentical promoter sequence requirementsQ34691148
T7 Early RNAs and Escherichia coli Ribosomal RNAs are Cut from Large Precursor RNAs In Vivo by Ribonuclease IIIQ34743869
Ribosomal proteins of Escherichia coli that stimulate stringent-factor-mediated pyrophosphoryl transfer in vitroQ35004550
Isolation and characterization of conditional lethal mutants of Escherichia coli defective in transcription termination factor rhoQ35005488
In vitrodefinition of the yeast RNA polymerase I promoterQ35012178
Identification of spacer tRNA genes in individual ribosomal RNA transcription units of Escherichia coliQ35033853
In vitro degradation of guanosine 5'-diphosphate, 3'-diphosphateQ35051944
Structure of the Escherichia coli Fis-DNA complex probed by protein conjugated with 1,10-phenanthroline copper(I) complexQ35069602
Effects of guanosine tetraphosphate on cell-free synthesis of Escherichia coli ribosomal RNA and other gene productsQ35084679
Identification of the synthesis of guanosine tetraphosphate (MS I) as insertion of a pyrophosphoryl group into the 3'-position in guanosine 5'-diphosphateQ35094820
Nonribosomal Synthesis of Guanosine 5′,3′-Polyphosphates by the Ribosomal Wash of Stringent Escherichia coliQ35108963
A new relaxed mutant of Escherichia coli with an altered 50S ribosomal subunitQ35112215
Reversibility of the pyrophosphoryl transfer from ATP to GTP by Escherichia coli stringent factorQ35112242
Protein kinase NII and the regulation of rDNA transcription in mammalian cellsQ35244727
How the phage lambda N gene product suppresses transcription termination: communication of RNA polymerase with regulatory proteins mediated by signals in nascent RNAQ35384285
Mechanism of action of regulatory proteins encoded by complex retrovirusesQ35403061
Specific transcription of mouse ribosomal DNA in a cell-free system that mimics control in vivoQ35413809
Sequence, regulation, and functions of fis in Salmonella typhimuriumQ35582859
Point mutations in the leader boxA of a plasmid-encoded Escherichia coli rrnB operon cause defective antitermination in vivoQ35589349
Cellular localization of the Escherichia coli SpoT proteinQ35589701
The distal end of the ribosomal RNA operon rrnD of Eschenchia coli contains a tRNA1thrgene, two 5S rRNA genes and a transcription terminatorQ35621869
The Fis protein: it's not just for DNA inversion anymoreQ35658496
Role of the RNA polymerase alpha subunit in transcription activationQ35658504
Fractionation and reconstitution of factors required for accurate transcription of mammalian ribosomal RNA genes: identification of a species-dependent initiation factorQ35718380
Control of transcription processivity in phage lambda: Nus factors strengthen the termination-resistant state of RNA polymerase induced by N antiterminatorQ35739925
Identification of two functional regions in Fis: the N-terminus is required to promote Hin-mediated DNA inversion but not lambda excisionQ35926206
Transcription of the Escherichia coli rrnB P1 promoter by the heat shock RNA polymerase (E sigma 32) in vitroQ35966837
The synthesis and function of ribosomes in a new mutant of Escherichia coliQ35967484
Growth rate-dependent control of the rrnB P1 core promoter in Escherichia coliQ35974981
Stringent factor from Escherichia coli directs ribosomal binding and release of uncharged tRNAQ35987029
Mechanism of the in vitro breakdown of guanosine 5'-diphosphate 3'-diphosphate in Escherichia coliQ35989428
Ribosomal RNA antitermination in vitro: requirement for Nus factors and one or more unidentified cellular components.Q36083899
Protein-protein communication within the transcription apparatusQ36099108
Coupling of rRNA transcription and ribosomal assembly in vivo. Formation of active ribosomal subunits in Escherichia coli requires transcription of rRNA genes by host RNA polymerase which cannot be replaced by bacteriophage T7 RNA polymerase.Q53022109
Crystal structure of the factor for inversion stimulation FIS at 2.0 A resolution.Q53025666
Three-dimensional structure of the E. coli DNA-binding protein FIS.Q53030527
An unusual rRNA operon constellation: in Thermus thermophilus HB8 the 23S/5S rRNA operon is a separate entity from the 16S rRNA operon.Q53045272
Isolation and characterization of an RNA relaxed mutant of B. subtilis.Q53722810
The effects of fusidic acid on growth, ribosome synthesis and RNA metabolism in Escherichia coli.Q53998457
ppGpp concentration, growth without PBP2 activity, and growth-rate control in Escherichia coli.Q54196539
A relA(S) suppressor mutant allele of Bacillus subtilis which maps to relA and responds only to carbon limitation.Q54211458
Specificity of antitermination mechanisms. Suppression of the terminator cluster T1-T2 of Escherichia coli ribosomal RNA operon, rrnB, by phage lambda antiterminators.Q54284857
On the Turnover of ppGpp in Escherichia coliQ54316702
Regions of DNA involved in the stringent control of plasmid-encoded rRNA in vivoQ54369900
A consequence of the rel gene during a glucose to lactate downshift in Escherichia coli. The rates of ribonucleic acid synthesis.Q54382115
An elongation control particle containing the N gene transcriptional antitermination protein of bacteriophage lambda.Q54397017
Genetic studies on the beta subunit of Escherichia coli RNA polymerase. VII. RNA polymerase is a target for ppGpp.Q54429204
Analysis of nutR: a region of phage lambda required for antitermination of transcription.Q54510663
Functional homology between E. coli ribosomal protein L11 and B. megaterium protein BM-L11.Q54562621
Genetics and physiology of the rel system of Bacillus subtilisQ54563383
Factor for inversion stimulation-dependent growth rate regulation of serine and threonine tRNA species.Q54608502
Isolation and properties of a ribosome-bound factor required for ppGpp and ppGpp synthesis in Escherichia coli.Q54610023
Factor for inversion stimulation-dependent growth rate regulation of individual tRNA species in Escherichia coli.Q54637273
High concentrations of ppGpp decrease the RNA chain growth rate. Implications for protein synthesis and translational fidelity during amino acid starvation in Escherichia coli.Q54640072
Bacteriophage lambda N-dependent transcription antitermination. Competition for an RNA site may regulate antitermination.Q54640587
Evidence for a regulatory function of the histone-like Escherichia coli protein H-NS in ribosomal RNA synthesis.Q54642298
Growth-rate-dependent Accumulation of Twelve tRNA Species in Escherichia coliQ54660376
Involvement of the RNA polymerase alpha subunit C-terminal region in co-operative interaction and transcriptional activation with OxyR protein.Q54660915
NusG alters rho-dependent termination of transcription in vitro independent of kinetic coupling.Q54665876
Decreasing transcription elongation rate in Escherichia coli exposed to amino acid starvationQ54675385
Analysis of the Fis-dependent and Fis-independent transcription activation mechanisms of the Escherichia coli ribosomal RNA P1 promoterQ54682148
Overexpression of the relA gene in Escherichia coli.Q54700280
Sequences upstream of the-35 hexamer of rrnB P1 affect promoter strength and upstream activation.Q54709836
The structural basis of the high in vivo strength of the rRNA P2 promoter of Escherichia coli.Q54729932
Studies in vivo on Escherichia coli RNA polymerase mutants altered in the stringent response.Q54744885
Cellular factors couple recombination with growth phase: characterization of a new component in the lambda site-specific recombination pathway.Q54761410
Stringent control in Escherichia coli applies also to transcription by T7 RNA polymerase.Q54766471
The physiology of stringent factor (ATP:GTP 3'-diphosphotransferase) in Escherichia coli.Q54781207
Increased expression of ribosomal genes during inhibition of ribosome assembly in Escherichia coli.Q54795026
In vitro Transcription of Escherichia coli Ribosomal RNA GenesQ57308161
Polymerase I transcription, termination, and processingQ58796382
Control of Ribosomal RNA Synthesis in vitroQ59063162
Stringency without ppGpp accumulationQ59064702
Functional interrelationship between two tandem E. coli ribosomal RNA promotersQ59070013
Specific inhibition of ribosomal RNA synthesis in vitro by guanosine 3′ diphosphate, 5′ diphosphateQ59083692
Termination of transcription by nusA gene protein of Escherichia coliQ59092240
The nus mutations affect transcription termination in Escherichia coliQ59092258
Evidence for a ppGpp-binding site on Escherichia coli RNA polymerase: proximity relationship with the rifampicin-binding domainQ60259298
DNA-dependent protein kinase: a potent inhibitor of transcription by RNA polymerase IQ63362934
A relaxed mutant with an altered ribosomal protein L11Q67480282
Differential phosphorylation and localization of the transcription factor UBF in vivo in response to serum deprivation. In vitro dephosphorylation of UBF reduces its transactivation propertiesQ67728087
Antitermination of characterized transcriptional terminators by the Escherichia coli rrnG leader regionQ68509839
Physiological effects of the fructose-1,6-diphosphate aldolase ts8 mutation on stable RNA synthesis in Escherichia coliQ39943424
Autogenous regulation of the RNA polymerase beta subunit of Escherichia coli occurs at the translational level in vivoQ39950915
A ribosome-independent, soluble stringent factor-like enzyme isolated from a Bacillus brevisQ39977830
Analysis of the relA Gene Product of Escherichia coliQ40084061
Promoter sequence for stringent control of bacterial ribonucleic acid synthesis.Q40333508
The regulation of ribosomal RNA synthesis and bacterial cell growthQ40387392
Guanosine tetraphosphate as a global regulator of bacterial RNA synthesis: a model involving RNA polymerase pausing and queuingQ40401293
Sequence of the cyanobacterial tRNA(w) gene in Synechocystis PCC 6803: requirement of enzymatic 3' CCA attachment to the acceptor stemQ40407335
Transcriptional arrest within the first exon is a fast control mechanism in c-myc gene expressionQ40419300
Both fis-dependent and factor-independent upstream activation of the rrnB P1 promoter are face of the helix dependentQ40420180
Conserved features of coordinately regulatedE.colipromotersQ40454945
In vitroevidence that eukaryotic ribosomal RNA transcription is regulated by modification of RNA polymerase IQ40462456
Nucleotide sequence of therrnGribosomal RNA promoter region ofEscherichia coliQ40464622
Growth-dependent regulation of rRNA synthesis is mediated by a transcription initiation factor (TIF-IA).Q40472582
E. coli RNA polymerase-rRNA promoter interaction and the effect of ppGppQ40482119
RNA processing in prokaryotic cellsQ40486145
Determination of the promoter strength in the mixed transcription system: promoters of lactose, tryplophan and ribosomal protein L10 operons fromExcherichia ColiQ40490174
Determination of the promoter strength in the mixed transcription system. II. Promoters of ribosomal RNA, ribosomal protein S1 and recA protein operons from Escherichia coliQ40491683
The FIS protein binds and bends the origin of chromosomal DNA replication, oriC, of Escherichia coliQ40505779
The N-terminal part of theE.ColiDNA binding protein FIS is essential for stimulating site-specific DNA inversion but is not required for specific DNA bindingQ40508271
Linker scanning of the yeast RNA polymerase I promoterQ40539562
Empirical estimation of protein-induced DNA bending angles: applications to lambda site-specific recombination complexesQ40556347
Interaction between RNA polymerase and a ribosomal RNA promoter of E.coliQ40574155
Synthesis of guanosine tetraphosphate (Magic Spot I) in Saccharomyces cerevisiaeQ40748988
In vitro transcription of the ribosomal RNA genes of E. coli DNAQ40775013
In vitro transcription of three different ribosomal RNA cistrons of E. coli; heterogeneity of control regionsQ40775040
Expression of spacer tRNA genes in ribosomal RNA transcription units carried by hybrid col E1 plasmids in E. coliQ40796675
The regulation of RNA synthesis in yeast. I: Starvation experimentsQ40802211
Influence of the GCGC discriminator motif introduced into the ribosomal RNA P2- and tac promoter on growth-rate control and stringent sensitivityQ40820043
Control of transcription termination by RNA-binding proteinsQ40835318
In vitro degradation of guanosine tetraphosphate (ppGpp) by an enzyme associated with the ribosomal fraction fromEscherichia coliQ40847037
Some rRNA operons in E. coli have tRNA genes at their distal endsQ40856862
Stringent Factor and Ribosomes are Present in Equimolar Amounts in Cells from a Stringent Strain of Escherichia coliQ40858274
A gene involved in the metabolic control of ppGpp synthesisQ40860900
The Escherichia coli FIS protein is not required for the activation of tyrT transcription on entry into exponential growthQ40873201
RNA and protein elements of E. coli and lambda transcription antitermination complexesQ40886792
Does HIV-1 Tat induce a change in viral initiation rights?Q40905875
Yeast has a true stringent responseQ40936739
Degradation of Guanosine 3'-diphosphate 5'-diphosphate in vitro by the spoT Gene Product of Escherichia coliQ40943522
In vitro transcripts from the rrn B ribosomal RNA cistron originate from two tandem promotersQ41004015
Mutants of Escherichia coli defective in the degradation of guanosine 5′-triphosphate, 3′-diphosphate (pppGpp)Q41023922
Identification of initiation sites for the in vitro transcription of rRNA operons rrnE and rrnA in E. coliQ41062723
Relaxed control of RNA synthesis during nutritional shiftdowns of a hisU mutant of Salmonella typhimuriumQ41075989
Transcriptional and post-transcriptional control of RNA polymerase and ribosomal protein genes cloned on composite ColE1 plasmids in the bacterium Escherichia coliQ41080840
Relaxed mutants ofSerratia marcescens SM-6. Biochemical traits and relevance of therel + allele for the formation of exoenzymesQ41104047
Control of rRNA synthesis in Escherichia coli at increased rrn gene dosage. Role of guanosine tetraphosphate and ribosome feedbackQ41139175
Guanosine tetraphosphate (ppGpp) dependence of the growth rate control of rrnB P1 promoter activity in Escherichia coliQ41194353
The role of FIS in trans activation of stable RNA operons of E. coliQ41204267
A growth-dependent transcription initiation factor (TIF-IA) interacting with RNA polymerase I regulates mouse ribosomal RNA synthesisQ41222808
E.coli Fis protein activates ribosomal RNA transcription in vitro and in vivoQ41231233
Growth rate dependence of transfer RNA abundance in Escherichia coliQ41237752
Stringent and growth control of rRNA synthesis in Escherichia coli are both mediated by ppGppQ41251956
Regulation of the expression of the tufB operon: DNA sequences directly involved in the stringent controlQ41390001
The E.coli fis promoter is subject to stringent control and autoregulationQ41519126
The nucleolar transcription factor mUBF is phosphorylated by casein kinase II in the C-terminal hyperacidic tail which is essential for transactivationQ41525985
Effects of the antiterminator BoxA on transcription elongation kinetics and ppGpp inhibition of transcription elongation in Escherichia coliQ41678212
Promoters of Escherichia coli: a hierarchy of in vivo strength indicates alternate structures.Q42159661
Synthesis and turnover of basal level guanosine tetraphosphate in Escherichia coliQ42447251
Control of the Escherichia coli rrnB P1 promoter strength by ppGppQ42477470
Basal ppGpp level adjustment shown by new spoT mutants affect steady state growth rates and rrnA ribosomal promoter regulation in Escherichia coliQ42489489
The Staphylococcus carnosus secE gene: cloning, nucleotide sequence, and functional characterization in Escherichia coli secE mutant strainsQ42605639
Factor-independent activation of Escherichia coli rRNA transcription. II. characterization of complexes of rrnB P1 promoters containing or lacking the upstream activator region with Escherichia coli RNA polymeraseQ42613378
Factor-independent activation of Escherichia coli rRNA transcription. I. Kinetic analysis of the roles of the upstream activator region and supercoiling on transcription of the rrnB P1 promoter in vitroQ42622681
Buchnera aphidicola (a prokaryotic endosymbiont of aphids) contains a putative 16S rRNA operon unlinked to the 23S rRNA-encoding gene: sequence determination, and promoter and terminator analysisQ42673674
The genome of the non-cultured, bacterial-like organism associated with citrus greening disease contains the nusG-rplKAJL-rpoBC gene cluster and the gene for a bacteriophage type DNA polymeraseQ42684977
Similar organization of the nusA-infB operon in Bacillus subtilis and Escherichia coliQ36100001
Escherichia coli-Salmonella typhimurium hybrid nusA genes: identification of a short motif required for action of the lambda N transcription antitermination proteinQ36105671
Sequence distributions associated with DNA curvature are found upstream of strong E. coli promotersQ36115433
Dominant lethal phenotype of a mutation in the -35 recognition region of Escherichia coli sigma 70Q36128651
Melting during steady-state transcription of the rrnB P1 promoter in vivo and in vitroQ36140139
Efficient excision of phage lambda from the Escherichia coli chromosome requires the Fis proteinQ36147986
Expression of ClpB, an analog of the ATP-dependent protease regulatory subunit in Escherichia coli, is controlled by a heat shock sigma factor (sigma 32).Q36148966
Cloning, mapping, and molecular characterization of the rRNA operons of Clostridium perfringensQ36152558
Saturation mutagenesis of an Escherichia coli rRNA promoter and initial characterization of promoter variantsQ36181561
Identification of promoter mutants defective in growth-rate-dependent regulation of rRNA transcription in Escherichia coliQ36181574
Loss of the spacer loop sequence from the rrnB operon in the Escherichia coli K-12 subline that bears the relA1 mutationQ36195076
Bacillus subtilis rRNA promoters are growth rate regulated in Escherichia coliQ36230314
Streptomyces relC mutants with an altered ribosomal protein ST-L11 and genetic analysis of a Streptomyces griseus relC mutantQ36257477
Evidence for antitermination in Escherichia coli RRNA transcriptionQ36301654
Tn9 and IS1 inserts in a ribosomal ribonucleic acid operon of Escherichia coli are incompletely polarQ36309129
Regulatory nucleotides involved in the Rel function of Bacillus subtilisQ36312147
rpoB mutation in Escherichia coli alters control of ribosome synthesis by guanosine tetraphosphate.Q36328804
Physiological characterization of Escherichia coli rpoB mutants with abnormal control of ribosome synthesisQ36332346
Escherichia coli mutant containing a large deletion from relA to argAQ36337583
Cloning the spoT gene of Escherichia coli: identification of the spoT gene productQ36338420
Deletion analysis of the expression of rRNA genes and associated tRNA genes carried by a lambda transducing bacteriophageQ36341129
Mutations in the spoT gene of Salmonella typhimurium: effects on his operon expressionQ36363316
Inhibitory effect of high-level transcription of the bacteriophage lambda nutL region on transcription of rRNA in Escherichia coliQ36364146
Control of rRNA and tRNA syntheses in Escherichia coli by guanosine tetraphosphateQ36389450
A genetic locus for the regulation of ribonucleic acid synthesisQ36442193
Metabolic growth rate control in Escherichia coli may be a consequence of subsaturation of the macromolecular biosynthetic apparatus with substrates and catalytic componentsQ36582943
Role of ribosomal protein S12 in peptide chain elongation: analysis of pleiotropic, streptomycin-resistant mutants of Escherichia coliQ36598544
Chloramphenicol-Induced Changes in the Synthesis of Ribosomal, Transfer, and Messenger Ribonucleic Acids in Escherichia coli B/rQ36602018
Control of Ribosome Synthesis in Escherichia coli : Analysis of an Energy Source Shift-DownQ36602507
Studies on a mutant of Escherichia coli with unbalanced ribonucleic acid synthesisQ36625243
Identification of two steps during Xenopus ribosomal gene transcription that are sensitive to protein phosphorylationQ36648459
The RNA polymerase I transactivator upstream binding factor requires its dimerization domain and high-mobility-group (HMG) box 1 to bend, wrap, and positively supercoil enhancer DNA.Q36666683
Nucleotide pools and regulation of ribonucleic acid synthesis in yeastQ36762440
P433issue4
P407language of work or nameEnglishQ1860
P921main subjectEscherichia coliQ25419
P304page(s)623-645
P577publication date1995-12-01
P1433published inMicrobiological ReviewsQ26842868
P1476titleControl of rRNA transcription in Escherichia coli
P478volume59

Reverse relations

cites work (P2860)
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