The small RNA regulators of Escherichia coli: roles and mechanisms*

scientific article (publication date: 2004)

The small RNA regulators of Escherichia coli: roles and mechanisms* is …
instance of (P31):
scholarly articleQ13442814
review articleQ7318358

External links are
P356DOI10.1146/ANNUREV.MICRO.58.030603.123841
P3181OpenCitations bibliographic resource ID2923150
P698PubMed publication ID15487940
P5875ResearchGate publication ID8228762

P2093author name stringGottesman S
P407language of work or nameEnglishQ1860
P921main subjectEscherichia coliQ25419
P304page(s)303-28
P577publication date2004-01-01
P1433published inAnnual Review of MicrobiologyQ15762942
P1476titleThe small RNA regulators of Escherichia coli: roles and mechanisms*
P478volume58

Reverse relations

cites work (P2860)
Q92532800A Mn-sensing riboswitch activates expression of a Mn2+/Ca2+ ATPase transporter in Streptococcus
Q33738360A PhoQ/P-regulated small RNA regulates sensitivity of Escherichia coli to antimicrobial peptides
Q37667255A Small Regulatory RNA Contributes to the Preferential Colonization of Escherichia coli O157:H7 in the Large Intestine in Response to a Low DNA Concentration
Q39086567A comprehensive benchmark of RNA-RNA interaction prediction tools for all domains of life.
Q37412066A coordinated proteomic approach for identifying proteins that interact with the E. coli ribosomal protein S12.
Q36668852A dynamic and intricate regulatory network determines Pseudomonas aeruginosa virulence
Q28241931A highly conserved 6S RNA structure is required for regulation of transcription
Q35040974A highly conserved protein of unknown function in Sinorhizobium meliloti affects sRNA regulation similar to Hfq.
Q21266551A motif-based search in bacterial genomes identifies the ortholog of the small RNA Yfr1 in all lineages of cyanobacteria
Q34096685A novel antisense RNA regulates at transcriptional level the virulence gene icsA of Shigella flexneri.
Q24678523A novel fur- and iron-regulated small RNA, NrrF, is required for indirect fur-mediated regulation of the sdhA and sdhC genes in Neisseria meningitidis
Q21203780A putative RNA-interference-based immune system in prokaryotes: computational analysis of the predicted enzymatic machinery, functional analogies with eukaryotic RNAi, and hypothetical mechanisms of action
Q35036974A qrr noncoding RNA deploys four different regulatory mechanisms to optimize quorum-sensing dynamics.
Q36973020A quantitative comparison of sRNA-based and protein-based gene regulation
Q24672099A small RNA regulates multiple ABC transporter mRNAs by targeting C/A-rich elements inside and upstream of ribosome-binding sites
Q34145427Acis-Encoded Antisense Small RNA Regulated by the HP0165-HP0166 Two-Component System Controls Expression ofureBinHelicobacter pylori
Q48194060Alternative pathways for Escherichia coli biofilm formation revealed by sRNA overproduction.
Q36440293Aminoglycoside interactions with RNAs and nucleases.
Q27648889An Hfq-like protein in archaea: Crystal structure and functional characterization of the Sm protein from Methanococcus jannaschii
Q34538442An antibody-based microarray assay for small RNA detection
Q24557485An extended transcriptional regulatory network of Escherichia coli and analysis of its hierarchical structure and network motifs
Q33305177An in vivo expression technology screen for Vibrio cholerae genes expressed in human volunteers
Q24547055An internal antisense RNA regulates expression of the photosynthesis gene isiA
Q46151936Analyses of mRNA destabilization and translational inhibition mediated by Hfq-binding small RNAs
Q30444464Antisense RNA modulation of alkyl hydroperoxide reductase levels in Helicobacter pylori correlates with organic peroxide toxicity but not infectivity.
Q34173899Application of TALEs, CRISPR/Cas and sRNAs as trans-acting regulators in prokaryotes
Q34865022Artificial trans-encoded small non-coding RNAs specifically silence the selected gene expression in bacteria.
Q79594930Atomic force microscopy dissects the hierarchy of genome architectures in eukaryote, prokaryote, and chloroplast
Q26766027Bacterial Small Regulatory RNAs and Hfq Protein
Q37688895Bacterial nucleoid-associated proteins, nucleoid structure and gene expression
Q26830110Bacterial quorum sensing: its role in virulence and possibilities for its control
Q35037002Bacterial quorum-sensing network architectures
Q36499774Bacterial stationary-state mutagenesis and Mammalian tumorigenesis as stress-induced cellular adaptations and the role of epigenetics
Q36400621Balancing gene expression without library construction via a reusable sRNA pool
Q28253347Base-pairing requirement for RNA silencing by a bacterial small RNA and acceleration of duplex formation by Hfq
Q33855695Bistability and oscillations in gene regulation mediated by small noncoding RNAs
Q28271440CCA addition to tRNA: implications for tRNA quality control
Q34428862Cell cycle-regulated degradation of tmRNA is controlled by RNase R and SmpB.
Q21562607Cellular electron microscopy imaging reveals the localization of the Hfq protein close to the bacterial membrane
Q37071165Central role of quorum sensing in regulating the production of pathogenicity factors in Pseudomonas aeruginosa.
Q28268374Characterization of Vibrio cholerae RyhB: the RyhB regulon and role of ryhB in biofilm formation
Q24678182Characterization of the Staphylococcus aureus heat shock, cold shock, stringent, and SOS responses and their effects on log-phase mRNA turnover
Q29620042Circular RNAs are a large class of animal RNAs with regulatory potency
Q28252581Coding sequence targeting by MicC RNA reveals bacterial mRNA silencing downstream of translational initiation
Q33250363Combinatorial engineering of intergenic regions in operons tunes expression of multiple genes
Q36885037Comparative genomic reconstruction of transcriptional regulatory networks in bacteria
Q33325741Comparative genomics-based investigation of resequencing targets in Vibrio fischeri: focus on point miscalls and artefactual expansions
Q44315986Comparative transcriptome analysis of a lowly virulent strain of Erwinia amylovora in shoots of two apple cultivars - susceptible and resistant to fire blight.
Q38469100Competition among Hfq-binding small RNAs in Escherichia coli
Q38285571Competition between target sites of regulators shapes post-transcriptional gene regulation.
Q44932493Computational approaches for the discovery of bacterial small RNAs
Q50953641Control of ATP concentration in Escherichia coli using synthetic small regulatory RNAs for enhanced S-adenosylmethionine production.
Q21131396Control of virulence by small RNAs in Streptococcus pneumoniae
Q91594621Coordinate regulation of the expression of SdsR toxin and its downstream pphA gene by RyeA antitoxin in Escherichia coli
Q35009100Correlation of mRNA and protein in complex biological samples.
Q27653537Crystal structure of a novel Sm-like protein of putative cyanophage origin at 2.60 Å resolution
Q90057977Crystal structure of an Escherichia coli Hfq Core (residues 2-69)-DNA complex reveals multifunctional nucleic acid binding sites
Q35949212CsrA inhibits translation initiation of Escherichia coli hfq by binding to a single site overlapping the Shine-Dalgarno sequence
Q34001909Deep sequencing reveals as-yet-undiscovered small RNAs in Escherichia coli
Q39175035Deep sequencing-based identification of small non-coding RNAs in Streptomyces coelicolor.
Q42014958Defining a role for Hfq in Gram-positive bacteria: evidence for Hfq-dependent antisense regulation in Listeria monocytogenes
Q24648654Design and implementation of three incoherent feed-forward motif based biological concentration sensors
Q38313543Design and use of synthetic regulatory small RNAs to control gene expression in Escherichia coli
Q24556624Detection of 5'- and 3'-UTR-derived small RNAs and cis-encoded antisense RNAs in Escherichia coli
Q33882840Detection of small RNAs in Bordetella pertussis and identification of a novel repeated genetic element.
Q42554046Distinct kinetic determinants for the stepwise CCA addition to tRNA
Q42334282Divergence involving global regulatory gene mutations in an Escherichia coli population evolving under phosphate limitation
Q37911599Dual-function RNA regulators in bacteria
Q37249990Dynamic features of gene expression control by small regulatory RNAs.
Q39396236Dynamics of Salmonella small RNA expression in non-growing bacteria located inside eukaryotic cells
Q37392496Endonucleolytic initiation of mRNA decay in Escherichia coli
Q37933953Engineering biological systems with synthetic RNA molecules
Q36061866Engineering naturally occurring trans-acting non-coding RNAs to sense molecular signals
Q33283839Enterohemorrhagic Escherichia coli biofilms are inhibited by 7-hydroxyindole and stimulated by isatin
Q37384283Epigenetics: heterochromatin meets RNAi.
Q22065980Escherichia coli K-12: a cooperatively developed annotation snapshot--2005
Q36855904Escherichia coli noncoding RNAs can affect gene expression and physiology of Caenorhabditis elegans
Q34124406Escherichia coli starvation diets: essential nutrients weigh in distinctly
Q47879002Escherichia coli transcription factor YncC (McbR) regulates colanic acid and biofilm formation by repressing expression of periplasmic protein YbiM (McbA).
Q36331209Eukaryotic Lsm proteins: lessons from bacteria
Q24655847Evidence for a major role of antisense RNAs in cyanobacterial gene regulation
Q56272004Evolutionary patterns of non-coding RNAs
Q54348620Exploring the microbial metalloproteome using MIRAGE.
Q35217099Functional characterization of bacterial sRNAs using a network biology approach
Q36397172Fur-mediated global regulatory circuits in pathogenic Neisseria species.
Q24642890Gene dosage compensation calibrates four regulatory RNAs to control Vibrio cholerae quorum sensing
Q28768627Genes for small, noncoding RNAs under sporulation control in Bacillus subtilis
Q35634595Genetic evidence suggests that the intergenic region between pstA and pstB plays a role in the regulation of rpoS translation during phosphate limitation
Q33316638Genetic interaction screens with ordered overexpression and deletion clone sets implicate the Escherichia coli GTPase YjeQ in late ribosome biogenesis
Q38243092Genome engineering and gene expression control for bacterial strain development
Q38003893Genome-scale genetic manipulation methods for exploring bacterial molecular biology
Q34191891Genome-wide detection of novel regulatory RNAs in E. coli
Q35575315Genome-wide investigation of mRNA lifetime determinants in Escherichia coli cells cultured at different growth rates.
Q95778916Genome-wide search reveals a novel GacA-regulated small RNA in Pseudomonas species
Q24633132Genomic SELEX for Hfq-binding RNAs identifies genomic aptamers predominantly in antisense transcripts
Q28246632Global discovery of small RNAs in Yersinia pseudotuberculosis identifies Yersinia-specific small, noncoding RNAs required for virulence
Q33416805Global systems-level analysis of Hfq and SmpB deletion mutants in Salmonella: implications for virulence and global protein translation
Q34202709Glucose uptake regulation in E. coli by the small RNA SgrS: comparative analysis of E. coli K-12 (JM109 and MG1655) and E. coli B (BL21)
Q34308667Helicobacter pylori 5'ureB-sRNA, a cis-encoded antisense small RNA, negatively regulates ureAB expression by transcription termination
Q40724195Hfq is a regulator of F-plasmid TraJ and TraM synthesis in Escherichia coli.
Q42793472Hfq is required for optimal nitrate assimilation in the Cyanobacterium Anabaena sp. strain PCC 7120.
Q24680586Hfq modulates the sigmaE-mediated envelope stress response and the sigma32-mediated cytoplasmic stress response in Escherichia coli
Q54293188Hfq reduces envelope stress by controlling expression of envelope-localized proteins and protein complexes in enteropathogenic Escherichia coli.
Q37191303Hfq, a novel pleiotropic regulator of virulence-associated genes in Francisella tularensis
Q24536474Hfq-dependent regulation of OmpA synthesis is mediated by an antisense RNA.
Q57030072High-throughput in vivo mapping of RNA accessible interfaces to identify functional sRNA binding sites
Q34082536Histidine affinity chromatography-based methodology for the simultaneous isolation of Escherichia coli small and ribosomal RNA.
Q34473835How to find small non-coding RNAs in bacteria
Q33558040Identification and characterization of noncoding small RNAs in Streptococcus pneumoniae serotype 2 strain D39.
Q33280947Identification and detection of RNA-RNA interactions using the yeast RNA hybrid system
Q34238399Identification and function of the RNA chaperone Hfq in the Lyme disease spirochete Borrelia burgdorferi.
Q34206765Identification by cDNA cloning of abundant sRNAs in a human-avirulent Yersinia pestis strain grown under five different growth conditions
Q34470763Identification of a Novel Small Non-Coding RNA Modulating the Intracellular Survival of Brucella melitensis
Q24677345Identification of a large noncoding RNA in extremophilic eubacteria
Q35052576Identification of a novel regulatory protein (CsrD) that targets the global regulatory RNAs CsrB and CsrC for degradation by RNase E.
Q24646592Identification of a sigma B-dependent small noncoding RNA in Listeria monocytogenes
Q21092872Identification of cyanobacterial non-coding RNAs by comparative genome analysis
Q24684824Identification of new noncoding RNAs in Listeria monocytogenes and prediction of mRNA targets
Q37309315Identification of novel sRNAs in mycobacterial species
Q24548795Identification of small Hfq-binding RNAs in Listeria monocytogenes
Q24651584Identification of small RNAs in Mycobacterium tuberculosis
Q54411459Identification of small noncoding RNAs in Helicobacter pylori by a bioinformatics-based approach.
Q36747192Impact of the RNA chaperone Hfq on the fitness and virulence potential of uropathogenic Escherichia coli.
Q24557422Implication of membrane localization of target mRNA in the action of a small RNA: mechanism of post-transcriptional regulation of glucose transporter in Escherichia coli
Q24630113Imprecise transcription termination within Escherichia coli greA leader gives rise to an array of short transcripts, GraL
Q40223748Induction of expression of hfq by DksA is essential for Shigella flexneri virulence
Q40631587Inhibition of Phagocytic Killing of Escherichia coli in Drosophila Hemocytes by RNA Chaperone Hfq.
Q28681074Insights from the architecture of the bacterial transcription apparatus
Q28289704Integrating anaerobic/aerobic sensing and the general stress response through the ArcZ small RNA
Q33415706Intergenic regions of Borrelia plasmids contain phylogenetically conserved RNA secondary structure motifs
Q38602982Intermolecular base stacking mediates RNA-RNA interaction in a crystal structure of the RNA chaperone Hfq.
Q33826851Investigation of the human pathogen Acinetobacter baumannii under iron limiting conditions
Q34298528Involvement of Enterococcus faecalis small RNAs in stress response and virulence.
Q35852136Isoenergetic microarrays to study the structure and interactions of DsrA and OxyS RNAs in two- and three-component complexes
Q37392525Killer and protective ribosomes
Q24679480Limited role for the DsrA and RprA regulatory RNAs in rpoS regulation in Salmonella enterica
Q42180716Locus of enterocyte effacement: a pathogenicity island involved in the virulence of enteropathogenic and enterohemorragic Escherichia coli subjected to a complex network of gene regulation
Q37573774Loops and networks in control of Francisella tularensis virulence
Q34568672Loss of Hfq activates the sigmaE-dependent envelope stress response in Salmonella enterica
Q35017839Mapping interactions between the RNA chaperone FinO and its RNA targets
Q33588067Mathematical modeling of translation initiation for the estimation of its efficiency to computationally design mRNA sequences with desired expression levels in prokaryotes
Q90271711Mechanism for coordinate regulation of rpoS by sRNA-sRNA interaction in Escherichia coli
Q37638237Messenger RNA Turnover Processes in Escherichia coli, Bacillus subtilis, and Emerging Studies in Staphylococcus aureus
Q36156264Metabolic engineering in the -omics era: elucidating and modulating regulatory networks
Q34555151Metabolic engineering of Escherichia coli using synthetic small regulatory RNAs
Q34490463Metal limitation and toxicity at the interface between host and pathogen
Q33675274Metal uptake in host-pathogen interactions: role of iron in Porphyromonas gingivalis interactions with host organisms
Q33815005MicroRNA-130b is involved in bovine granulosa and cumulus cells function, oocyte maturation and blastocyst formation
Q30487595Modeling post-transcriptional regulation activity of small non-coding RNAs in Escherichia coli
Q53615396Modular pathway engineering of Bacillus subtilis for improved N-acetylglucosamine production.
Q34649165Modulating RssB activity: IraP, a novel regulator of sigma(S) stability in Escherichia coli
Q36104838Modulation of stress and virulence in Listeria monocytogenes
Q39023611Moraxella catarrhalis expresses an unusual Hfq protein
Q33959363Multiple small RNAs identified in Mycobacterium bovis BCG are also expressed in Mycobacterium tuberculosis and Mycobacterium smegmatis
Q27665568N. meningitidis 1681 is a member of the FinO family of RNA chaperones
Q39325488Natural antisense RNAs as mRNA regulatory elements in bacteria: a review on function and applications
Q35272524Newly discovered antiterminator RNAs in bacteriophage
Q22066043Non-coding RNA
Q56990781Noncoding RNA
Q81612033Noncoding RNAs at the membrane
Q34298226Novel iron-regulated and Fur-regulated small regulatory RNAs in Aggregatibacter actinomycetemcomitans
Q34350583Novel regulatory small RNAs in Streptococcus pyogenes
Q36144898OLE RNA protects extremophilic bacteria from alcohol toxicity
Q42052427Oligoribonuclease is a common downstream target of lithium-induced pAp accumulation in Escherichia coli and human cells
Q89824505On a stake-out: Mycobacterial small RNA identification and regulation
Q92867207Outer Membrane Porins
Q42131924Overaccumulation of the chloroplast antisense RNA AS5 is correlated with decreased abundance of 5S rRNA in vivo and inefficient 5S rRNA maturation in vitro
Q33628842Patterns of subnet usage reveal distinct scales of regulation in the transcriptional regulatory network of Escherichia coli
Q34976553Phenol degradation in the strictly anaerobic iron-reducing bacterium Geobacter metallireducens GS-15.
Q35164771PolyU tail of rho-independent terminator of bacterial small RNAs is essential for Hfq action
Q35859490Polyamines Stimulate the Level of the σ38 Subunit (RpoS) of Escherichia coli RNA Polymerase, Resulting in the Induction of the Glutamate Decarboxylase-dependent Acid Response System via the gadE Regulon
Q37333696Polyamines are critical for the induction of the glutamate decarboxylase-dependent acid resistance system in Escherichia coli
Q34006620Positive regulation by small RNAs and the role of Hfq
Q38016604Post-transcriptional regulation on a global scale: form and function of Csr/Rsm systems.
Q34385341Prediction and characterization of small non-coding RNAs related to secondary metabolites in Saccharopolyspora erythraea
Q27496618Prediction of Sinorhizobium meliloti sRNA genes and experimental detection in strain 2011
Q41170399Prediction of candidate small non-coding RNAs in Agrobacterium by computational analysis
Q31105323Prediction of small, noncoding RNAs in bacteria using heterogeneous data
Q28239140Principal expression of two mRNA isoforms (ABCB 5alpha and ABCB 5beta ) of the ATP-binding cassette transporter gene ABCB 5 in melanoma cells and melanocytes
Q54667779Proteomic analysis reveals the wide-ranging effects of the novel, iron-responsive regulator RirA in Rhizobium leguminosarum bv. viciae.
Q27346857Quantification of the gene silencing performances of rationally-designed synthetic small RNAs
Q28742043Quantifying the sequence-function relation in gene silencing by bacterial small RNAs
Q28469313Quantitative characteristics of gene regulation by small RNA
Q34740838RETRACTED: The second RNA chaperone, Hfq2, is also required for survival under stress and full virulence of Burkholderia cenocepacia J2315.
Q24656891RNA misfolding and the action of chaperones
Q33640968RNA polymerase elongation factors
Q35799715RNA regulators of host immunity and pathogen adaptive responses in the oral cavity
Q80497534RNA regulators of transcription
Q36470934RNA synthetic biology
Q42618064RNase E action at a distance: degradation of target mRNAs mediated by an Hfq-binding small RNA in bacteria
Q29619938RNase E-based ribonucleoprotein complexes: mechanical basis of mRNA destabilization mediated by bacterial noncoding RNAs
Q24684056RNase E-dependent processing stabilizes MicX, a Vibrio cholerae sRNA
Q35088007Rapid binding and release of Hfq from ternary complexes during RNA annealing
Q28471595Rapid changes in gene expression dynamics in response to superoxide reveal SoxRS-dependent and independent transcriptional networks
Q42412425Recent advances in the expression, evolution, and dynamics of prokaryotic genomes
Q39111071Reciprocal transcriptional and posttranscriptional growth-phase-dependent expression of sfh, a gene that encodes a paralogue of the nucleoid-associated protein H-NS.
Q24603059Recognition and discrimination of target mRNAs by Sib RNAs, a cis-encoded sRNA family
Q36768135Regulating bacterial transcription with small RNAs.
Q37362802Regulating the regulator: an RNA decoy acts as an OFF switch for the regulation of an sRNA.
Q30438218Regulation by iron: RNA rules the rust
Q40605925Regulation of 6S RNA biogenesis by switching utilization of both sigma factors and endoribonucleases
Q39705425Regulation of an intergenic transcript controls adjacent gene transcription in Saccharomyces cerevisiae.
Q34082070Regulation of glycogen metabolism in yeast and bacteria
Q43030235Regulatory RNAs in Haloferax volcanii
Q38077251Regulatory RNAs in archaea: first target identification in Methanoarchaea.
Q38172811Regulatory RNAs: charming gene management styles for synthetic biology applications
Q40175884Regulatory small RNAs: the key to coordinating global regulatory circuits
Q42713382Requirement of the CsdA DEAD-box helicase for low temperature riboregulation of rpoS mRNA
Q50913509Resistance to environmental stress requires the RNA chaperones CspC and CspE.
Q34452446Rho-dependent termination of ssrS (6S RNA) transcription in Escherichia coli: implication for 3' processing of 6S RNA and expression of downstream ygfA (putative 5-formyl-tetrahydrofolate cyclo-ligase).
Q26829340Ribonucleic acid interference induced gene knockdown
Q26769016Riboregulation of bacterial and archaeal transposition
Q38344415Role of Hfq in iron-dependent and -independent gene regulation in Neisseria meningitidis.
Q41911365RpoS expression and the general stress response in Azotobacter vinelandii during carbon and nitrogen diauxic shifts
Q47921308Secondary structure of antisense RNAβ, an internal transcriptional terminator of the plasmid-encoded iron transport-biosynthesis operon of Vibrio anguillarum
Q36115873Sensing your surroundings: how transcription-regulatory networks of the cell discern environmental signals
Q34581112Shewanella oneidensis Hfq promotes exponential phase growth, stationary phase culture density, and cell survival
Q24669800SigmaE-dependent small RNAs of Salmonella respond to membrane stress by accelerating global omp mRNA decay
Q42561222Significant bias against the ACA triplet in the tmRNA sequence of Escherichia coli K-12.
Q27324428Simultaneous characterization of cellular RNA structure and function with in-cell SHAPE-Seq
Q28074775Small Non-Coding RNAs: New Insights in Modulation of Host Immune Response by Intracellular Bacterial Pathogens
Q36668567Small RNA regulators and the bacterial response to stress
Q24649054Small RNA-induced differential degradation of the polycistronic mRNA iscRSUA
Q37303336Small RNAs establish gene expression thresholds
Q26998827Small RNAs for defence and regulation in archaea
Q33944543Small RNAs in mycobacteria: an unfolding story
Q27026497Small RNAs in the Vibrionaceae: an ocean still to be explored
Q38230079Small RNAs in the control of RpoS, CsgD, and biofilm architecture of Escherichia coli
Q34514381Small RNAs in the genus Clostridium
Q41814705Small genes under sporulation control in the Bacillus subtilis genome
Q24645276Small non-coding RNAs in Streptomyces coelicolor
Q34254544Small regulatory RNAs in Pseudomonas aeruginosa
Q53861487SspA is required for acid resistance in stationary phase by downregulation of H-NS in Escherichia coli.
Q54410339SsrA (tmRNA) acts as an antisense RNA to regulate Staphylococcus aureus pigment synthesis by base pairing with crtMN mRNA
Q39361630Stationary-phase regulation of RpoS translation in Escherichia coli
Q27675434Structural and Biochemical Studies on ATP Binding and Hydrolysis by the Escherichia coli RNA Chaperone Hfq
Q35040942Structural insights into the dynamics and function of the C-terminus of the E. coli RNA chaperone Hfq.
Q27658064Structure of Escherichia coli Hfq bound to polyriboadenylate RNA
Q41850298Structure of an Escherichia coli Hfq:RNA complex at 0.97 Å resolution
Q94503642Synthetic Biology Tools for Genome and Transcriptome Engineering of Solventogenic Clostridium
Q37125393Synthetic effect between envelope stress and lack of outer membrane vesicle production in Escherichia coli.
Q39762251Synthetic translational regulation by an L7Ae-kink-turn RNP switch
Q24544245Target prediction for small, noncoding RNAs in bacteria
Q36857563The Escherichia coli GcvB sRNA Uses Genetic Redundancy to Control cycA Expression
Q24644517The Hfq-dependent small noncoding RNA NrrF directly mediates Fur-dependent positive regulation of succinate dehydrogenase in Neisseria meningitidis
Q37545684The MiaA tRNA modification enzyme is necessary for robust RpoS expression in Escherichia coli
Q36470338The RNA binding protein Hfq interacts specifically with tRNAs.
Q34226643The RNA chaperone Hfq independently coordinates expression of the VirB type IV secretion system and the LuxR-type regulator BabR in Brucella abortus 2308
Q54466630The Rhizobium leguminosarum regulator IrrA affects the transcription of a wide range of genes in response to Fe availability.
Q33537458The Sinorhizobium meliloti RNA chaperone Hfq influences central carbon metabolism and the symbiotic interaction with alfalfa
Q33705134The Sinorhizobium meliloti RNA chaperone Hfq mediates symbiosis of S. meliloti and alfalfa
Q50231788The ability of haemolysins expressed by atypical enteropathogenic Escherichia coli to bind to extracellular matrix components
Q36490860The basis of antagonistic pleiotropy in hfq mutations that have opposite effects on fitness at slow and fast growth rates
Q33697945The chaperone ClpX stimulates expression of Staphylococcus aureus protein A by Rot dependent and independent pathways
Q43149694The functional Hfq-binding module of bacterial sRNAs consists of a double or single hairpin preceded by a U-rich sequence and followed by a 3' poly(U) tail
Q34045712The importance of the small RNA chaperone Hfq for growth of epidemic Yersinia pestis, but not Yersinia pseudotuberculosis, with implications for plague biology
Q47767055The important conformational plasticity of DsrA sRNA for adapting multiple target regulation
Q35017796The intracellular sRNA transcriptome of Listeria monocytogenes during growth in macrophages
Q38331095The modulation of Staphylococcus aureus mRNA turnover
Q37984186The non-coding RNA world of the bacterial pathogen Listeria monocytogenes
Q24683850The novel transcription factor SgrR coordinates the response to glucose-phosphate stress
Q35960290The phosphotransferase VanU represses expression of four qrr genes antagonizing VanO-mediated quorum-sensing regulation in Vibrio anguillarum.
Q41606921The role of Hfq in regulation of lipA expression in Pseudomonas protegens Pf-5.
Q38357202The role of RNA chaperone Hfq in poly(A) metabolism methods to determine positions, abundance, and lengths of short oligo(A) tails.
Q36722471The role of microRNAs in sensing nutrient stress
Q34469894The sRNA SorY confers resistance during photooxidative stress by affecting a metabolite transporter in Rhodobacter sphaeroides
Q24655343The small RNA GcvB regulates sstT mRNA expression in Escherichia coli
Q28058215The small RNA PhrS stimulates synthesis of the Pseudomonas aeruginosa quinolone signal
Q57183085The small RNA, SdsR, acts as a novel type of toxin in Escherichia coli
Q33809409The transposon-like Correia elements encode numerous strong promoters and provide a potential new mechanism for phase variation in the meningococcus.
Q83929165This paper has been retracted.Retraction notice is found at http://nar.oxfordjournals.org/cgi/content/full/37/15/5234
Q24538993Three small RNAs jointly ensure secondary metabolism and biocontrol in Pseudomonas fluorescens CHA0
Q38557121Tiny RNAs and their voyage via extracellular vesicles: Secretion of bacterial small RNA and eukaryotic microRNA.
Q34112189TonB-dependent transporters: regulation, structure, and function.
Q35215820Transcription by the numbers redux: experiments and calculations that surprise
Q35759763Transcription termination within the iron transport-biosynthesis operon of Vibrio anguillarum requires an antisense RNA
Q35075071Transcriptional analysis of Deinococcus radiodurans reveals novel small RNAs that are differentially expressed under ionizing radiation
Q41846723Transcriptome mapping of pAR060302, a blaCMY-2-positive broad-host-range IncA/C plasmid
Q24546344Translational repression is sufficient for gene silencing by bacterial small noncoding RNAs in the absence of mRNA destruction
Q57456017Two virulent sRNAs identified by genomic sequencing target the type III secretion system in rice bacterial blight pathogen
Q35764298Two-level inhibition of galK expression by Spot 42: Degradation of mRNA mK2 and enhanced transcription termination before the galK gene
Q36931479Using in-cell SHAPE-Seq and simulations to probe structure-function design principles of RNA transcriptional regulators.
Q37142677Vibrio vulnificus rpoS expression is repressed by direct binding of cAMP-cAMP receptor protein complex to its two promoter regions.
Q37204064Whole-genome tiling array analysis of Mycobacterium leprae RNA reveals high expression of pseudogenes and noncoding regions
Q37850790cis-antisense RNA, another level of gene regulation in bacteria.

Search more.