scholarly article | Q13442814 |
P50 | author | Hirotada Mori | Q115991193 |
P2093 | author name string | Kiriko Hiraoka | |
Masaru Tomita | |||
Kenji Nakahigashi | |||
Akio Kanai | |||
Wataru Nomura | |||
Motomu Matsui | |||
Reiko Hirano | |||
Atsuko Shinhara | |||
P2860 | cites work | Deep sequencing analysis of small noncoding RNA and mRNA targets of the global post-transcriptional regulator, Hfq | Q21145046 |
Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection | Q22122301 | ||
CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice | Q24286950 | ||
A small RNA regulates the expression of genes involved in iron metabolism in Escherichia coli | Q24536169 | ||
Transcriptome analysis of Escherichia coli using high-density oligonucleotide probe arrays | Q24537785 | ||
A computational approach to identify genes for functional RNAs in genomic sequences | Q24555117 | ||
Detection of 5'- and 3'-UTR-derived small RNAs and cis-encoded antisense RNAs in Escherichia coli | Q24556624 | ||
GadY, a small-RNA regulator of acid response genes in Escherichia coli | Q24563573 | ||
Regulatory RNAs in bacteria | Q24595082 | ||
Identification of novel small RNAs using comparative genomics and microarrays | Q24601229 | ||
RegulonDB version 7.0: transcriptional regulation of Escherichia coli K-12 integrated within genetic sensory response units (Gensor Units) | Q24612687 | ||
Identification of regulatory RNAs in Bacillus subtilis | Q24622905 | ||
RNomics in Escherichia coli detects new sRNA species and indicates parallel transcriptional output in bacteria | Q24641843 | ||
Repression of small toxic protein synthesis by the Sib and OhsC small RNAs | Q24648490 | ||
An antisense RNA controls synthesis of an SOS-induced toxin evolved from an antitoxin | Q24674628 | ||
BLAT—The BLAST-Like Alignment Tool | Q24682492 | ||
A dual function for a bacterial small RNA: SgrS performs base pairing-dependent regulation and encodes a functional polypeptide | Q24683800 | ||
A survey of small RNA-encoding genes in Escherichia coli | Q24684021 | ||
Predicting non-coding RNA genes in Escherichia coli with boosted genetic programming | Q24810301 | ||
One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products | Q27860842 | ||
Global analysis of small RNA and mRNA targets of Hfq | Q28184898 | ||
Regulation of the expression of the cell-cycle gene ftsZ by DicF antisense RNA. Division does not require a fixed number of FtsZ molecules | Q28186244 | ||
Multiple hok genes on the chromosome of Escherichia coli | Q28199067 | ||
A bioinformatics based approach to discover small RNA genes in the Escherichia coli genome | Q28205081 | ||
Novel small RNA-encoding genes in the intergenic regions of Escherichia coli | Q28205853 | ||
Molecular characterization of long direct repeat (LDR) sequences expressing a stable mRNA encoding for a 35-amino-acid cell-killing peptide and a cis-encoded small antisense RNA in Escherichia coli | Q28214985 | ||
Computational identification of noncoding RNAs in E. coli by comparative genomics | Q28216022 | ||
Genetic evidence that DicF, a second division inhibitor encoded by the Escherichia coli dicB operon, is probably RNA | Q28238977 | ||
Coding sequence targeting by MicC RNA reveals bacterial mRNA silencing downstream of translational initiation | Q28252581 | ||
SOAP: short oligonucleotide alignment program | Q28266228 | ||
Interactive Tree Of Life (iTOL): an online tool for phylogenetic tree display and annotation | Q28269158 | ||
The primary transcriptome of the major human pathogen Helicobacter pylori | Q28273545 | ||
Involvement of a novel transcriptional activator and small RNA in post-transcriptional regulation of the glucose phosphoenolpyruvate phosphotransferase system | Q28291273 | ||
Java Treeview--extensible visualization of microarray data | Q29547226 | ||
Open source clustering software | Q29547702 | ||
The small RNA regulators of Escherichia coli: roles and mechanisms* | Q29618536 | ||
A strand-specific RNA-Seq analysis of the transcriptome of the typhoid bacillus Salmonella typhi | Q33483317 | ||
Genome-wide identification of transcription start sites, promoters and transcription factor binding sites in E. coli | Q33511247 | ||
Small stress response proteins in Escherichia coli: proteins missed by classical proteomic studies | Q33558107 | ||
RNA-seq: from technology to biology | Q33604404 | ||
A broadening world of bacterial small RNAs | Q33653390 | ||
Next generation sequencing of microbial transcriptomes: challenges and opportunities. | Q34019275 | ||
Genome-wide detection of novel regulatory RNAs in E. coli | Q34191891 | ||
RegulonDB (version 6.0): gene regulation model of Escherichia coli K-12 beyond transcription, active (experimental) annotated promoters and Textpresso navigation. | Q34586477 | ||
Small RNAs in bacteria: diverse regulators of gene expression in response to environmental changes | Q34635312 | ||
Prophages and bacterial genomics: what have we learned so far? | Q35187156 | ||
Phage regulatory circuits and virulence gene expression | Q36175321 | ||
Small RNAs making a small protein | Q36299789 | ||
Regulating bacterial transcription with small RNAs. | Q36768135 | ||
Small membrane proteins found by comparative genomics and ribosome binding site models. | Q37039330 | ||
Mapping the Burkholderia cenocepacia niche response via high-throughput sequencing | Q37104903 | ||
Experimental discovery of sRNAs in Vibrio cholerae by direct cloning, 5S/tRNA depletion and parallel sequencing | Q37149801 | ||
sRNAMap: genomic maps for small non-coding RNAs, their regulators and their targets in microbial genomes | Q37202654 | ||
The transcription unit architecture of the Escherichia coli genome | Q37320317 | ||
Studying bacterial transcriptomes using RNA-seq | Q37796158 | ||
Prediction of rho-independent transcriptional terminators in Escherichia coli | Q39097710 | ||
Guidelines for bacteriophage characterization | Q39245478 | ||
RNAMotif, an RNA secondary structure definition and search algorithm | Q39489150 | ||
Escherichia colipromoter sequences predictin vitroRNA polymerase selectivity | Q40466920 | ||
Widespread antisense transcription in Escherichia coli. | Q41895141 | ||
Structure and complexity of a bacterial transcriptome. | Q42841193 | ||
A small, stable RNA induced by oxidative stress: role as a pleiotropic regulator and antimutator | Q48047346 | ||
Prediction of non-coding and antisense RNA genes in Escherichia coli with Gapped Markov Model. | Q51945166 | ||
A probabilistic method for identifying start codons in bacterial genomes. | Q52049906 | ||
A flexible motif search technique based on generalized profiles. | Q52308727 | ||
P407 | language of work or name | English | Q1860 |
P921 | main subject | Escherichia coli | Q25419 |
P304 | page(s) | 428 | |
P577 | publication date | 2011-08-24 | |
P1433 | published in | BMC Genomics | Q15765854 |
P1476 | title | Deep sequencing reveals as-yet-undiscovered small RNAs in Escherichia coli | |
P478 | volume | 12 |
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