| scholarly article | Q13442814 |
| P2093 | author name string | Karen M Wassarman | |
| Amy E Trotochaud | |||
| P2860 | cites work | Mfold web server for nucleic acid folding and hybridization prediction | Q24498105 |
| Additional low-abundance human small nuclear ribonucleoproteins: U11, U12, etc | Q24644695 | ||
| 3' exoribonucleolytic trimming is a common feature of the maturation of small, stable RNAs in Escherichia coli | Q24685964 | ||
| Basic local alignment search tool | Q25938991 | ||
| Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure | Q27860806 | ||
| 7SK small nuclear RNA binds to and inhibits the activity of CDK9/cyclin T complexes | Q28116607 | ||
| 6S RNA regulates E. coli RNA polymerase activity | Q28140651 | ||
| The 7SK small nuclear RNA inhibits the CDK9/cyclin T1 kinase to control transcription | Q28206012 | ||
| The Sm-like Hfq protein increases OxyS RNA interaction with target mRNAs | Q28216159 | ||
| Sequence of 6S RNA of E. coli | Q28248044 | ||
| CD-Search: protein domain annotations on the fly | Q29615328 | ||
| The small RNA regulators of Escherichia coli: roles and mechanisms* | Q29618536 | ||
| RNA polymerases from Bacillus subtilis and Escherichia coli differ in recognition of regulatory signals in vitro | Q33994781 | ||
| Use of Mono Q high-resolution ion-exchange chromatography to obtain highly pure and active Escherichia coli RNA polymerase | Q34032011 | ||
| Multiple Sigma Subunits and the Partitioning of Bacterial Transcription Space | Q34267512 | ||
| B2 RNA binds directly to RNA polymerase II to repress transcript synthesis | Q34339487 | ||
| Stationary phase gene regulation: what makes an Escherichia coli promoter sigmaS-selective? | Q35012148 | ||
| Compartmentalization of gene expression during Bacillus subtilis spore formation | Q35798772 | ||
| 6S RNA function enhances long-term cell survival | Q35892783 | ||
| Identification of the epitope for a highly cross-reactive monoclonal antibody on the major sigma factor of bacterial RNA polymerase | Q39844630 | ||
| Mutations in the bvgA gene of Bordetella pertussis that differentially affect regulation of virulence determinants | Q39897935 | ||
| On the binding of tRNA to Escherichia coli RNA polymerase | Q41106206 | ||
| The SINE-encoded mouse B2 RNA represses mRNA transcription in response to heat shock | Q42826559 | ||
| A small, stable RNA induced by oxidative stress: role as a pleiotropic regulator and antimutator | Q48047346 | ||
| Identification and characterization of novel small RNAs in the aspS-yrvM intergenic region of the Bacillus subtilis genome | Q48287774 | ||
| Expression, purification of, and monoclonal antibodies to sigma factors from Escherichia coli. | Q54512728 | ||
| RapA, a novel RNA polymerase-associated protein, is a bacterial homolog of SWI2/SNF2 | Q74326119 | ||
| Precursors of stable RNA accumulated in mutant ofE. coli | Q93748117 | ||
| P433 | issue | 4 | |
| P407 | language of work or name | English | Q1860 |
| P304 | page(s) | 313-9 | |
| P577 | publication date | 2005-04-01 | |
| P1433 | published in | Nature Structural & Molecular Biology | Q1071739 |
| P1476 | title | A highly conserved 6S RNA structure is required for regulation of transcription | |
| P478 | volume | 12 |
| Q36334945 | 6S RNA - an ancient regulator of bacterial RNA polymerase rediscovered |
| Q47680725 | 6S RNA Mimics B-Form DNA to Regulate Escherichia coli RNA Polymerase |
| Q37378015 | 6S RNA binding to Esigma(70) requires a positively charged surface of sigma(70) region 4.2. |
| Q42777020 | 6S RNA in Rhodobacter sphaeroides: 6S RNA and pRNA transcript levels peak in late exponential phase and gene deletion causes a high salt stress phenotype. |
| Q54350099 | 6S RNA modulates growth and antibiotic production in Streptomyces coelicolor. |
| Q47318788 | 6S RNA plays a role in recovery from nitrogen depletion in Synechocystis sp. PCC 6803. |
| Q34697038 | 6S RNA regulation of pspF transcription leads to altered cell survival at high pH. |
| Q34747108 | 6S RNA regulation of relA alters ppGpp levels in early stationary phase |
| Q55259546 | 6S RNA, a Global Regulator of Transcription. |
| Q54393335 | 6S RNA-dependent inhibition of RNA polymerase is released by RNA-dependent synthesis of small de novo products. |
| Q36917127 | 6S RNA: a regulator of transcription |
| Q38168866 | 6S RNA: recent answers--future questions |
| Q36760655 | 6S-1 RNA function leads to a delay in sporulation in Bacillus subtilis |
| Q33290223 | A computational pipeline for high- throughput discovery of cis-regulatory noncoding RNA in prokaryotes |
| Q42554538 | A pRNA-induced structural rearrangement triggers 6S-1 RNA release from RNA polymerase in Bacillus subtilis |
| Q54448246 | An RNA transcriptional regulator templates its own regulatory RNA. |
| Q37622082 | An overview of RNAs with regulatory functions in gram-positive bacteria |
| Q38295683 | Anti-Transcription Factor RNA Aptamers as Potential Therapeutics |
| Q39026423 | Bacillus subtilis 6S-2 RNA serves as a template for short transcripts in vivo |
| Q27692531 | Bacterial small RNA regulators: versatile roles and rapidly evolving variations |
| Q33547774 | Binding and release of the 6S transcriptional control RNA. |
| Q24676295 | Characterization of the structure, function, and mechanism of B2 RNA, an ncRNA repressor of RNA polymerase II transcription |
| Q33288112 | Comparative analysis of structured RNAs in S. cerevisiae indicates a multitude of different functions |
| Q34242511 | Dampening DNA binding: a common mechanism of transcriptional repression for both ncRNAs and protein domains |
| Q33539990 | Depletion of the non-coding regulatory 6S RNA in E. coli causes a surprising reduction in the expression of the translation machinery |
| Q33882840 | Detection of small RNAs in Bordetella pertussis and identification of a novel repeated genetic element. |
| Q42116386 | Dissemination of 6S RNA among bacteria |
| Q101121230 | Diverse and unified mechanisms of transcription initiation in bacteria |
| Q39396236 | Dynamics of Salmonella small RNA expression in non-growing bacteria located inside eukaryotic cells |
| Q24644523 | Ecological genomics of marine picocyanobacteria |
| Q37545363 | Engineering ligand-responsive gene-control elements: lessons learned from natural riboswitches |
| Q45220336 | Evolution of 7SK RNA and its protein partners in metazoa |
| Q25256852 | Experimental approaches to identify non-coding RNAs |
| Q83081676 | From bacteria to humans, chromatin to elongation, and activation to repression: The expanding roles of noncoding RNAs in regulating transcription |
| Q28768627 | Genes for small, noncoding RNAs under sporulation control in Bacillus subtilis |
| Q34722556 | Genome-wide identification of regulatory RNAs in the human pathogen Clostridium difficile. |
| Q34486185 | Genomewide comparison and novel ncRNAs of Aquificales. |
| Q39760133 | Global regulation of transcription by a small RNA: a quantitative view |
| Q90753044 | Grad-seq in a Gram-positive bacterium reveals exonucleolytic sRNA activation in competence control |
| Q34473835 | How to find small non-coding RNAs in bacteria |
| Q41510653 | Identification of 88 regulatory small RNAs in the TIGR4 strain of the human pathogen Streptococcus pneumoniae. |
| Q24677345 | Identification of a large noncoding RNA in extremophilic eubacteria |
| Q21263198 | Identification of chromosomal alpha-proteobacterial small RNAs by comparative genome analysis and detection in Sinorhizobium meliloti strain 1021 |
| Q34425836 | Identification of novel small RNAs and characterization of the 6S RNA of Coxiella burnetii |
| Q24622905 | Identification of regulatory RNAs in Bacillus subtilis |
| Q89625583 | In silico prediction and expression profile analysis of small non-coding RNAs in Herbaspirillum seropedicae SmR1 |
| Q24683587 | In vitro analysis of the interaction between the small RNA SR1 and its primary target ahrC mRNA |
| Q37122107 | Initiating nucleotide identity determines efficiency of RNA synthesis from 6S RNA templates in Bacillus subtilis but not Escherichia coli |
| Q33842112 | Legionella pneumophila 6S RNA optimizes intracellular multiplication |
| Q40542112 | Maturation of 6S regulatory RNA to a highly elongated structure |
| Q41952362 | Mechanistic comparison of Bacillus subtilis 6S-1 and 6S-2 RNAs--commonalities and differences |
| Q34981167 | Metatranscriptomics reveals unique microbial small RNAs in the ocean's water column |
| Q34438347 | Ms1, a novel sRNA interacting with the RNA polymerase core in mycobacteria. |
| Q37318660 | New ex vivo reporter assay system reveals that σ factors of an unculturable pathogen control gene regulation involved in the host switching between insects and plants. |
| Q34124570 | NilD CRISPR RNA contributes to Xenorhabdus nematophila colonization of symbiotic host nematodes |
| Q37058515 | Non-coding RNAs regulating the transcriptional machinery |
| Q42544987 | Northern blot detection of endogenous small RNAs (approximately14 nt) in bacterial total RNA extracts |
| Q38294358 | Promoter specificity for 6S RNA regulation of transcription is determined by core promoter sequences and competition for region 4.2 of sigma70. |
| Q92126642 | Redefining the Small Regulatory RNA Transcriptome in Streptococcus pneumoniae Serotype 2 Strain D39 |
| Q36768135 | Regulating bacterial transcription with small RNAs. |
| Q35823616 | Regulation of 6S RNA by pRNA synthesis is required for efficient recovery from stationary phase in E. coli and B. subtilis |
| Q26852820 | Regulation of transcription by 6S RNAs: insights from the Escherichia coli and Bacillus subtilis model systems |
| Q37462687 | Regulation of transcription from two ssrS promoters in 6S RNA biogenesis |
| Q24595082 | Regulatory RNAs in bacteria |
| Q34452446 | Rho-dependent termination of ssrS (6S RNA) transcription in Escherichia coli: implication for 3' processing of 6S RNA and expression of downstream ygfA (putative 5-formyl-tetrahydrofolate cyclo-ligase). |
| Q28477804 | Sequence-based analysis uncovers an abundance of non-coding RNA in the total transcriptome of Mycobacterium tuberculosis |
| Q21131292 | Sibling rivalry: related bacterial small RNAs and their redundant and non-redundant roles |
| Q42561222 | Significant bias against the ACA triplet in the tmRNA sequence of Escherichia coli K-12. |
| Q24530293 | Small RNA genes expressed from Staphylococcus aureus genomic and pathogenicity islands with specific expression among pathogenic strains |
| Q36668567 | Small RNA regulators and the bacterial response to stress |
| Q35155330 | Small Regulatory RNA and Legionella pneumophila. |
| Q42911897 | Stationary phase reorganisation of the Escherichia coli transcription machinery by Crl protein, a fine-tuner of sigmas activity and levels |
| Q42675322 | Structure of an RNA polymerase II-RNA inhibitor complex elucidates transcription regulation by noncoding RNAs |
| Q40918849 | Structure of noncoding RNA is a determinant of function of RNA binding proteins in transcriptional regulation |
| Q54428374 | Studies on the expression of 6S RNA from E. coli: involvement of regulators important for stress and growth adaptation. |
| Q42779862 | Studies on the function of the riboregulator 6S RNA from E. coli: RNA polymerase binding, inhibition of in vitro transcription and synthesis of RNA-directed de novo transcripts |
| Q42291027 | The 5΄ UTR of the type I toxin ZorO can both inhibit and enhance translation |
| Q64976693 | The Stringent Response-Regulated sRNA Transcriptome of Borrelia burgdorferi. |
| Q54578483 | The dynamic protein partnership of RNA polymerase in Bacillus subtilis. |
| Q36736448 | The molecular basis of selective promoter activation by the sigmaS subunit of RNA polymerase. |
| Q34571457 | The small untranslated RNA SR1 from the Bacillus subtilis genome is involved in the regulation of arginine catabolism. |
| Q42722504 | The suboptimal structures find the optimal RNAs: homology search for bacterial non-coding RNAs using suboptimal RNA structures |
| Q27016195 | Transcriptome complexity and riboregulation in the human pathogen Helicobacter pylori |
| Q28710534 | Transcriptomic profiling of the oyster pathogen Vibrio splendidus opens a window on the evolutionary dynamics of the small RNA repertoire in the Vibrio genus |
| Q47663690 | Transfer RNA instability as a stress response in Escherichia coli: Rapid dynamics of the tRNA pool as a function of demand. |
| Q38193405 | sigmaS, a major player in the response to environmental stresses in Escherichia coli: role, regulation and mechanisms of promoter recognition. |
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