| scholarly article | Q13442814 |
| P2093 | author name string | Fengping Wang | |
| Xiang Xiao | |||
| Ying He | |||
| Lei Xiong | |||
| Huahua Jian | |||
| Muhammad Z Nawaz | |||
| P2860 | cites work | The novel cis-encoded small RNA h2cR is a negative regulator of hfq2 in Burkholderia cenocepacia | Q21133924 |
| Deep sequencing analysis of small noncoding RNA and mRNA targets of the global post-transcriptional regulator, Hfq | Q21145046 | ||
| Premature terminator analysis sheds light on a hidden world of bacterial transcriptional attenuation | Q21184031 | ||
| Comparative genomics reveals 104 candidate structured RNAs from bacteria, archaea, and their metagenomes | Q21184040 | ||
| The transcriptional landscape of the deep-sea bacterium Photobacterium profundum in both a toxR mutant and its parental strain | Q21266691 | ||
| RNAalifold: improved consensus structure prediction for RNA alignments | Q21284196 | ||
| Query-dependent banding (QDB) for faster RNA similarity searches | Q21563508 | ||
| CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice | Q24286950 | ||
| Differential RNA-seq of Vibrio cholerae identifies the VqmR small RNA as a regulator of biofilm formation | Q24490182 | ||
| Small RNA genes expressed from Staphylococcus aureus genomic and pathogenicity islands with specific expression among pathogenic strains | Q24530293 | ||
| A small RNA regulates the expression of genes involved in iron metabolism in Escherichia coli | Q24536169 | ||
| Noncoding RNA gene detection using comparative sequence analysis | Q24555068 | ||
| Fast and reliable prediction of noncoding RNAs | Q24556645 | ||
| Regulatory RNAs in bacteria | Q24595082 | ||
| sRNAs and the virulence of Salmonella enterica serovar Typhimurium | Q24597091 | ||
| Identification of novel small RNAs using comparative genomics and microarrays | Q24601229 | ||
| Genome-wide transcriptome analysis of the plant pathogen Xanthomonas identifies sRNAs with putative virulence functions | Q24618137 | ||
| NAPP: the Nucleic Acid Phylogenetic Profile Database | Q24620084 | ||
| Fractionation of 32P-labelled ribonucleic acids on polyacrylamide gels and their characterization by fingerprinting | Q69832747 | ||
| Global regulation by the small RNA-binding protein CsrA and the non-coding RNA molecule CsrB | Q77442679 | ||
| Single-pass classification of all noncoding sequences in a bacterial genome using phylogenetic profiles | Q24648002 | ||
| A survey of small RNA-encoding genes in Escherichia coli | Q24684021 | ||
| Identification of 17 Pseudomonas aeruginosa sRNAs and prediction of sRNA-encoding genes in 10 diverse pathogens using the bioinformatic tool sRNAPredict2 | Q24685579 | ||
| Experimental approaches to identify non-coding RNAs | Q25256852 | ||
| Bacterial small RNA regulators: versatile roles and rapidly evolving variations | Q27692531 | ||
| OrthoMCL: Identification of Ortholog Groups for Eukaryotic Genomes | Q27860860 | ||
| MicroRNAs: small RNAs with a big role in gene regulation | Q27860896 | ||
| The Listeria transcriptional landscape from saprophytism to virulence. | Q28131414 | ||
| Novel small RNA-encoding genes in the intergenic regions of Escherichia coli | Q28205853 | ||
| Absolute configuration of alpha isopropylmalate and the mechanism of its conversion to beta isopropylmalate in the biosynthesis of leucine | Q28238471 | ||
| Global discovery of small RNAs in Yersinia pseudotuberculosis identifies Yersinia-specific small, noncoding RNAs required for virulence | Q28246632 | ||
| Micros for microbes: non-coding regulatory RNAs in bacteria | Q28252632 | ||
| The small RNA chaperone Hfq and multiple small RNAs control quorum sensing in Vibrio harveyi and Vibrio cholerae | Q28270975 | ||
| Mechanism of RNA silencing by Hfq-binding small RNAs | Q28294833 | ||
| The regulatory role of ferric uptake regulator (Fur) during anaerobic respiration of Shewanella piezotolerans WP3 | Q28534129 | ||
| Differential expression of small RNAs from Burkholderia thailandensis in response to varying environmental and stress conditions | Q28659211 | ||
| Genes for small, noncoding RNAs under sporulation control in Bacillus subtilis | Q28768627 | ||
| Life at Depth: Photobacterium profundum Genome Sequence and Expression Analysis | Q29400080 | ||
| Hfq: a bacterial Sm-like protein that mediates RNA-RNA interaction | Q29619904 | ||
| Shewanella psychrophila sp. nov. and Shewanella piezotolerans sp. nov., isolated from west Pacific deep-sea sediment | Q31092067 | ||
| Environmental adaptation: genomic analysis of the piezotolerant and psychrotolerant deep-sea iron reducing bacterium Shewanella piezotolerans WP3 | Q33327361 | ||
| Biocomputational prediction of non-coding RNAs in model cyanobacteria | Q33421117 | ||
| Correlation between phylogenetic structure and function: examples from deep-sea Shewanella | Q33423098 | ||
| Discovering cis-regulatory RNAs in Shewanella genomes by Support Vector Machines | Q33426376 | ||
| Isolation of extremophiles with the detection and retrieval of Shewanella strains in deep-sea sediments from the west Pacific | Q33431462 | ||
| The heterocyst-specific NsiR1 small RNA is an early marker of cell differentiation in cyanobacterial filaments | Q33648068 | ||
| sRNAscanner: a computational tool for intergenic small RNA detection in bacterial genomes | Q33654291 | ||
| Methods for comprehensive experimental identification of RNA-protein interactions | Q33745576 | ||
| Desulfovibrio piezophilus sp. nov., a piezophilic, sulfate-reducing bacterium isolated from wood falls in the Mediterranean Sea. | Q33775342 | ||
| Small non-coding RNAs and the bacterial outer membrane | Q34000397 | ||
| Target identification of small noncoding RNAs in bacteria | Q34004747 | ||
| Antisense RNAs in bacteria and their genetic elements | Q34121867 | ||
| Complete genome sequence of the thermophilic, piezophilic, heterotrophic bacterium Marinitoga piezophila KA3 | Q34304571 | ||
| Consensus folding of aligned sequences as a new measure for the detection of functional RNAs by comparative genomics | Q34341458 | ||
| Identification of novel sRNAs in Brucella abortus 2308. | Q34412369 | ||
| How to find small non-coding RNAs in bacteria | Q34473835 | ||
| Computational discovery and RT-PCR validation of novel Burkholderia conserved and Burkholderia pseudomallei unique sRNAs | Q34530574 | ||
| Bacterial antisense RNAs: how many are there, and what are they doing? | Q34537427 | ||
| Identification of small RNAs in diverse bacterial species | Q34611996 | ||
| Regulatory mechanisms employed by cis-encoded antisense RNAs | Q34612437 | ||
| Identification of bacterial small non-coding RNAs: experimental approaches | Q34635147 | ||
| Genome-wide identification of regulatory RNAs in the human pathogen Clostridium difficile. | Q34722556 | ||
| Artificial trans-encoded small non-coding RNAs specifically silence the selected gene expression in bacteria. | Q34865022 | ||
| The RimP protein is important for maturation of the 30S ribosomal subunit | Q34923858 | ||
| Stealth regulation: biological circuits with small RNA switches | Q34999673 | ||
| Assessing computational tools for the discovery of small RNA genes in bacteria | Q35182654 | ||
| Functional characterization of bacterial sRNAs using a network biology approach | Q35217099 | ||
| New approach to the cultivation of methanogenic bacteria: 2-mercaptoethanesulfonic acid (HS-CoM)-dependent growth of Methanobacterium ruminantium in a pressureized atmosphere. | Q35228545 | ||
| A small RNA that regulates motility and biofilm formation in response to changes in nutrient availability in Escherichia coli. | Q35854632 | ||
| Ecology and biotechnology of the genus Shewanella | Q37012817 | ||
| Experimental discovery of sRNAs in Vibrio cholerae by direct cloning, 5S/tRNA depletion and parallel sequencing | Q37149801 | ||
| Regulating iron storage and metabolism with RNA: an overview of posttranscriptional controls of intracellular iron homeostasis | Q37906535 | ||
| Physiological roles of small RNA molecules. | Q38201542 | ||
| A transcriptome resource for the deep-sea bacterium Shewanella piezotolerans WP3 under cold and high hydrostatic pressure shock stress | Q39309122 | ||
| Draft Genome Sequence of the Deep-Sea Bacterium Shewanella benthica Strain KT99. | Q41226301 | ||
| Deep sequencing uncovers numerous small RNAs on all four replicons of the plant pathogen Agrobacterium tumefaciens | Q42115225 | ||
| RNAz 2.0: improved noncoding RNA detection. | Q42639394 | ||
| Identification of genes regulated by changing salinity in the deep-sea bacterium Shewanella sp. WP3 using RNA arbitrarily primed PCR. | Q43018079 | ||
| Shewanella--the environmentally versatile genome | Q43358567 | ||
| A small, stable RNA induced by oxidative stress: role as a pleiotropic regulator and antimutator | Q48047346 | ||
| Variation across species in the size of the nuclear genome supports the junk-DNA explanation for the C-value paradox | Q52230315 | ||
| Comparative genomics of small RNAs in bacterial genomes. | Q54443705 | ||
| P921 | main subject | deep sea | Q1070117 |
| Shewanella piezotolerans | Q61954941 | ||
| P304 | page(s) | 1093 | |
| P577 | publication date | 2017-06-15 | |
| P1433 | published in | Frontiers in Microbiology | Q27723481 |
| P1476 | title | Genome-Wide Detection of Small Regulatory RNAs in Deep-Sea Bacterium Shewanella piezotolerans WP3 | |
| P478 | volume | 8 |
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