scholarly article | Q13442814 |
P50 | author | Matthew Waldor | Q88480323 |
P2093 | author name string | Stephen Lory | |
Jonathan Livny | |||
Anja Brencic | |||
P2860 | cites work | RNAMotif, an RNA secondary structure definition and search algorithm | Q39489150 |
Hfq is essential for Vibrio cholerae virulence and downregulates sigma expression | Q47269170 | ||
The Brucella abortus host factor I (HF-I) protein contributes to stress resistance during stationary phase and is a major determinant of virulence in mice | Q47910975 | ||
A consensus motif common to all rho-dependent prokaryotic transcription terminators | Q48235906 | ||
Prediction of transcription terminators in bacterial genomes. | Q52108947 | ||
Small RNA genes expressed from Staphylococcus aureus genomic and pathogenicity islands with specific expression among pathogenic strains | Q24530293 | ||
sRNAPredict: an integrative computational approach to identify sRNAs in bacterial genomes | Q24532860 | ||
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs | Q24545170 | ||
Noncoding RNA gene detection using comparative sequence analysis | Q24555068 | ||
Rfam: annotating non-coding RNAs in complete genomes | Q24558580 | ||
Identification of tandem duplicate regulatory small RNAs in Pseudomonas aeruginosa involved in iron homeostasis | Q24561961 | ||
Identification of novel small RNAs using comparative genomics and microarrays | Q24601229 | ||
Efficient translation of the RpoS sigma factor in Salmonella typhimurium requires host factor I, an RNA-binding protein encoded by the hfq gene | Q24643457 | ||
A survey of small RNA-encoding genes in Escherichia coli | Q24684021 | ||
EcoCyc: a comprehensive database resource for Escherichia coli | Q24796847 | ||
Global analysis of small RNA and mRNA targets of Hfq | Q28184898 | ||
RsmY, a small regulatory RNA, is required in concert with RsmZ for GacA-dependent expression of biocontrol traits in Pseudomonas fluorescens CHA0 | Q28184928 | ||
A bioinformatics based approach to discover small RNA genes in the Escherichia coli genome | Q28205081 | ||
Novel small RNA-encoding genes in the intergenic regions of Escherichia coli | Q28205853 | ||
Computational identification of noncoding RNAs in E. coli by comparative genomics | Q28216022 | ||
Micros for microbes: non-coding regulatory RNAs in bacteria | Q28252632 | ||
Characterization of the small untranslated RNA RyhB and its regulon in Vibrio cholerae | Q28254721 | ||
The small RNA chaperone Hfq and multiple small RNAs control quorum sensing in Vibrio harveyi and Vibrio cholerae | Q28270975 | ||
Reduced virulence of a hfq mutant of Pseudomonas aeruginosa O1 | Q28493098 | ||
Small non-coding RNAs in Archaea | Q33226201 | ||
The small RNA IstR inhibits synthesis of an SOS-induced toxic peptide | Q33984064 | ||
RNase P: variations and uses | Q34462159 | ||
A salvage pathway for protein structures: tmRNA and trans-translation | Q35121013 | ||
yst gene expression in Yersinia enterocolitica is positively regulated by a chromosomal region that is highly homologous to Escherichia coli host factor 1 gene (hfq). | Q36821854 | ||
Positive control of swarming, rhamnolipid synthesis, and lipase production by the posttranscriptional RsmA/RsmZ system in Pseudomonas aeruginosa PAO1. | Q37734986 | ||
P433 | issue | 12 | |
P407 | language of work or name | English | Q1860 |
P921 | main subject | Pseudomonas aeruginosa | Q31856 |
bioinformatics | Q128570 | ||
P304 | page(s) | 3484-93 | |
P577 | publication date | 2006-01-01 | |
P1433 | published in | Nucleic Acids Research | Q135122 |
P1476 | title | Identification of 17 Pseudomonas aeruginosa sRNAs and prediction of sRNA-encoding genes in 10 diverse pathogens using the bioinformatic tool sRNAPredict2 | |
P478 | volume | 34 |
Q38644372 | 6S RNA is involved in acid resistance and invasion of epithelial cells in Salmonella enterica serovar Typhimurium |
Q92532800 | A Mn-sensing riboswitch activates expression of a Mn2+/Ca2+ ATPase transporter in Streptococcus |
Q36668852 | A dynamic and intricate regulatory network determines Pseudomonas aeruginosa virulence |
Q21142714 | A genome-wide analysis of small regulatory RNAs in the human pathogen group A Streptococcus |
Q28535217 | A genome-wide survey of highly expressed non-coding RNAs and biological validation of selected candidates in Agrobacterium tumefaciens |
Q44904086 | A multiobjective method for robust identification of bacterial small non-coding RNAs. |
Q24678523 | A novel fur- and iron-regulated small RNA, NrrF, is required for indirect fur-mediated regulation of the sdhA and sdhC genes in Neisseria meningitidis |
Q24631171 | A screen for non-coding RNA in Mycobacterium tuberculosis reveals a cAMP-responsive RNA that is expressed during infection |
Q34707860 | A small non-coding RNA of the invasion gene island (SPI-1) represses outer membrane protein synthesis from the Salmonella core genome |
Q34033315 | An atlas of Hfq-bound transcripts reveals 3' UTRs as a genomic reservoir of regulatory small RNAs |
Q28235324 | An integrated approach for finding overlooked genes in Shigella |
Q37622082 | An overview of RNAs with regulatory functions in gram-positive bacteria |
Q43094839 | Analysis of the small RNA P16/RgsA in the plant pathogen Pseudomonas syringae pv. tomato strain DC3000. |
Q35182654 | Assessing computational tools for the discovery of small RNA genes in bacteria |
Q37389545 | Bacterial chromosome-encoded small regulatory RNAs |
Q35872000 | Bacterial small RNAs in the Genus Rickettsia |
Q21263182 | Biocomputational prediction of small non-coding RNAs in Streptomyces |
Q37071165 | Central role of quorum sensing in regulating the production of pathogenicity factors in Pseudomonas aeruginosa. |
Q21184040 | Comparative genomics reveals 104 candidate structured RNAs from bacteria, archaea, and their metagenomes |
Q34270829 | Comparative profiling of Pseudomonas aeruginosa strains reveals differential expression of novel unique and conserved small RNAs |
Q30579994 | Comprehensive discovery and characterization of small RNAs in Corynebacterium glutamicum ATCC 13032 |
Q44932493 | Computational approaches for the discovery of bacterial small RNAs |
Q34530574 | Computational discovery and RT-PCR validation of novel Burkholderia conserved and Burkholderia pseudomallei unique sRNAs |
Q41962413 | Conservation and Occurrence of Trans-Encoded sRNAs in the Rhizobiales |
Q21131396 | Control of virulence by small RNAs in Streptococcus pneumoniae |
Q56888297 | Deep genome annotation of the opportunistic human pathogen Streptococcus pneumoniae D39 |
Q29346787 | Deep sequencing analyses expands the Pseudomonas aeruginosa AmpR regulon to include small RNA-mediated regulation of iron acquisition, heat shock and oxidative stress response |
Q21145046 | Deep sequencing analysis of small noncoding RNA and mRNA targets of the global post-transcriptional regulator, Hfq |
Q33633681 | Deep sequencing-based discovery of the Chlamydia trachomatis transcriptome |
Q33882840 | Detection of small RNAs in Bordetella pertussis and identification of a novel repeated genetic element. |
Q36112351 | Disruption of the carA gene in Pseudomonas syringae results in reduced fitness and alters motility |
Q40512113 | Genetic Regulation of Yersinia pestis |
Q33519844 | Genome diversity of Pseudomonas aeruginosa PAO1 laboratory strains |
Q33799810 | Genome-Wide Detection of Small Regulatory RNAs in Deep-Sea Bacterium Shewanella piezotolerans WP3 |
Q34888345 | Genome-wide analyses in bacteria show small-RNA enrichment for long and conserved intergenic regions |
Q28085500 | Genome-wide analyses of small non-coding RNAs in streptococci |
Q34191891 | Genome-wide detection of novel regulatory RNAs in E. coli |
Q33525404 | Genome-wide detection of predicted non-coding RNAs in Rhizobium etli expressed during free-living and host-associated growth using a high-resolution tiling array |
Q34245313 | Genome-wide identification of novel small RNAs in Pseudomonas aeruginosa |
Q95778916 | Genome-wide search reveals a novel GacA-regulated small RNA in Pseudomonas species |
Q38994591 | Global Transcriptional Responses to Osmotic, Oxidative, and Imipenem Stress Conditions in Pseudomonas putida |
Q28246632 | Global discovery of small RNAs in Yersinia pseudotuberculosis identifies Yersinia-specific small, noncoding RNAs required for virulence |
Q38025363 | Global discovery of small noncoding RNAs in pathogenic Yersinia species |
Q33762888 | Global transcriptome responses including small RNAs during mixed-species interactions with methicillin-resistant Staphylococcus aureus and Pseudomonas aeruginosa |
Q33369087 | High-throughput, kingdom-wide prediction and annotation of bacterial non-coding RNAs |
Q33558040 | Identification and characterization of noncoding small RNAs in Streptococcus pneumoniae serotype 2 strain D39. |
Q24621796 | Identification and functional characterization of small non-coding RNAs in Xanthomonas oryzae pathovar oryzae |
Q41510653 | Identification of 88 regulatory small RNAs in the TIGR4 strain of the human pathogen Streptococcus pneumoniae. |
Q24646592 | Identification of a sigma B-dependent small noncoding RNA in Listeria monocytogenes |
Q21263198 | Identification of chromosomal alpha-proteobacterial small RNAs by comparative genome analysis and detection in Sinorhizobium meliloti strain 1021 |
Q24653390 | Identification of differentially expressed small non-coding RNAs in the legume endosymbiont Sinorhizobium meliloti by comparative genomics |
Q24631254 | Identification of four novel small non-coding RNAs from Xanthomonas campestris pathovar campestris |
Q27496603 | Identification of novel growth phase- and media-dependent small non-coding RNAs in Streptococcus pyogenes M49 using intergenic tiling arrays |
Q21267227 | Identification of novel non-coding small RNAs from Streptococcus pneumoniae TIGR4 using high-resolution genome tiling arrays |
Q28237546 | Identification of novel regulatory small RNAs in Acinetobacter baumannii |
Q24651584 | Identification of small RNAs in Mycobacterium tuberculosis |
Q50043209 | Interesting twists on small RNA themes in Pseudomonas aeruginosa |
Q34523444 | Large-scale identification of small noncoding RNA with strand-specific deep sequencing and characterization of a novel virulence-related sRNA in Brucella melitensis |
Q33842112 | Legionella pneumophila 6S RNA optimizes intracellular multiplication |
Q53606806 | Mechanisms of Evolutionary Innovation Point to Genetic Control Logic as the Key Difference Between Prokaryotes and Eukaryotes. |
Q58694980 | Negative Control of RpoS Synthesis by the sRNA ReaL in |
Q91928891 | NfiR, a New Regulatory Noncoding RNA (ncRNA), Is Required in Concert with the NfiS ncRNA for Optimal Expression of Nitrogenase Genes in Pseudomonas stutzeri A1501 |
Q35016286 | Noncoding RNA of glutamine synthetase I modulates antibiotic production in Streptomyces coelicolor A3(2). |
Q34350583 | Novel regulatory small RNAs in Streptococcus pyogenes |
Q54450690 | On the interplay of gene positioning and the role of rho-independent terminators in Escherichia coli. |
Q27496618 | Prediction of Sinorhizobium meliloti sRNA genes and experimental detection in strain 2011 |
Q38638667 | Prediction of bacterial small RNAs in the RsmA (CsrA) and ToxT pathways: a machine learning approach |
Q42692362 | Pseudomonas putida KT2440 genome update by cDNA sequencing and microarray transcriptomics. |
Q36823010 | RNA search with decision trees and partial covariance models |
Q29114114 | RNA sequencing uncovers antisense RNAs and novel small RNAs in Streptococcus pyogenes |
Q34254347 | RNA-mediated regulation in Gram-positive pathogens: an overview punctuated with examples from the group A Streptococcus |
Q24603023 | RNApredator: fast accessibility-based prediction of sRNA targets |
Q38782283 | RNAspace.org: An integrated environment for the prediction, annotation, and analysis of ncRNA. |
Q41817844 | RNIE: genome-wide prediction of bacterial intrinsic terminators |
Q24684056 | RNase E-dependent processing stabilizes MicX, a Vibrio cholerae sRNA |
Q92126642 | Redefining the Small Regulatory RNA Transcriptome in Streptococcus pneumoniae Serotype 2 Strain D39 |
Q21144870 | Regulation of Hfq by the RNA CrcZ in Pseudomonas aeruginosa carbon catabolite repression |
Q41844456 | Regulatory RNAs and the HptB/RetS signalling pathways fine-tune Pseudomonas aeruginosa pathogenesis. |
Q40624537 | RpoS-dependent sRNA RgsA regulates Fis and AcpP in Pseudomonas aeruginosa. |
Q33564767 | Small RNA as global regulator of carbon catabolite repression in Pseudomonas aeruginosa |
Q36668567 | Small RNA regulators and the bacterial response to stress |
Q37878988 | Small RNAs as regulators of primary and secondary metabolism in Pseudomonas species |
Q33944543 | Small RNAs in mycobacteria: an unfolding story |
Q34514381 | Small RNAs in the genus Clostridium |
Q34765262 | Small non-coding RNAs in Caulobacter crescentus |
Q24645276 | Small non-coding RNAs in Streptomyces coelicolor |
Q34254544 | Small regulatory RNAs in Pseudomonas aeruginosa |
Q39014913 | Small regulatory RNAs in Streptococcus pneumoniae: discovery and biological functions |
Q47157269 | The Anaerobically Induced sRNA PaiI Affects Denitrification in Pseudomonas aeruginosa PA14. |
Q31145113 | The Clostridium small RNome that responds to stress: the paradigm and importance of toxic metabolite stress in C. acetobutylicum |
Q30470671 | The Pseudomonas aeruginosa transcriptome in planktonic cultures and static biofilms using RNA sequencing |
Q35158339 | The Rsm regulon of plant growth-promoting Pseudomonas fluorescens SS101: role of small RNAs in regulation of lipopeptide biosynthesis |
Q37995707 | The bacterial protein Hfq: much more than a mere RNA-binding factor |
Q24624170 | The group A Streptococcus small regulatory RNA FasX enhances streptokinase activity by increasing the stability of the ska mRNA transcript |
Q28058215 | The small RNA PhrS stimulates synthesis of the Pseudomonas aeruginosa quinolone signal |
Q27016195 | Transcriptome complexity and riboregulation in the human pathogen Helicobacter pylori |
Q28710534 | Transcriptomic profiling of the oyster pathogen Vibrio splendidus opens a window on the evolutionary dynamics of the small RNA repertoire in the Vibrio genus |
Q24684847 | Translational control and target recognition by Escherichia coli small RNAs in vivo |
Q26781380 | Yersinia pestis and Yersinia pseudotuberculosis infection: a regulatory RNA perspective |
Q33807840 | nocoRNAc: characterization of non-coding RNAs in prokaryotes |
Q24630235 | sRNATarBase: a comprehensive database of bacterial sRNA targets verified by experiments |
Q33654291 | sRNAscanner: a computational tool for intergenic small RNA detection in bacterial genomes |
Search more.