Antisense RNA associated with biological regulation of a restriction-modification system

scientific article

Antisense RNA associated with biological regulation of a restriction-modification system is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1093/NAR/GKR166
P932PMC publication ID3141266
P698PubMed publication ID21459843
P5875ResearchGate publication ID50988791

P2093author name stringIchizo Kobayashi
Yaoping Liu
Iwona Mruk
Liying Ge
P2860cites workGenetic addiction: selfish gene's strategy for symbiosis in the genomeQ24545839
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Repression of small toxic protein synthesis by the Sib and OhsC small RNAsQ24648490
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An antisense RNA controls synthesis of an SOS-induced toxin evolved from an antitoxinQ24674628
The complete genome sequence of Escherichia coli K-12Q27860542
Toxins-antitoxins: plasmid maintenance, programmed cell death, and cell cycle arrestQ28206549
Micros for microbes: non-coding regulatory RNAs in bacteriaQ28252632
Mechanism of post-segregational killing by the hoklsok system of plasmid R1: sok antisense RNA regulates formation of a hok mRNA species correlated with killing of plasmid-free cellsQ28270860
RNA antitoxinsQ28294158
Regulation of the EcoRI restriction-modification system: Identification of ecoRIM gene promoters and their upstream negative regulators in the ecoRIR gene.Q54438423
Specific-purpose plasmid cloning vectors. I. Low copy number, temperature-sensitive, mobilization-defective pSC101-derived containment vectors.Q54528047
Comparative analysis of expression of the Sal I restriction-modification system in Escherichia coli and StreptomycesQ58900208
Complex transcription of an operon encoding the Sail restriction-modification system of Streptomyces albus GQ58900225
Evolutionary role of restriction/modification systems as revealed by comparative genome analysisQ73943265
The role of MOR and the CI operator sites on the genetic switch of the temperate bacteriophage TP901-1Q79636228
Analysis of gene control signals by DNA fusion and cloning in Escherichia coliQ29615300
Self-perpetuating states in signal transduction: positive feedback, double-negative feedback and bistabilityQ29619706
The "megaprimer" method of site-directed mutagenesisQ29620742
Nature of the promoter activated by C.PvuII, an unusual regulatory protein conserved among restriction-modification systems.Q30775223
Restriction-modification systems as genomic parasites in competition for specific sequencesQ33756047
Shaping the genome--restriction-modification systems as mobile genetic elements.Q33801564
Role and mechanism of action of C. PvuII, a regulatory protein conserved among restriction-modification systemsQ33993566
The phasevarion: phase variation of type III DNA methyltransferases controls coordinated switching in multiple genesQ34097495
Mobility of a restriction-modification system revealed by its genetic contexts in three hostsQ34310367
Selfish behavior of restriction-modification systemsQ34317932
Transcriptional interference between convergent promoters caused by elongation over the promoterQ34324266
Horizontal gene transfer contributes to the wide distribution and evolution of type II restriction-modification systemsQ34407489
Bacterial small RNA regulatorsQ34409384
Bacterial antisense RNAs: how many are there, and what are they doing?Q34537427
Bistability in bacteriaQ34552788
Regulatory mechanisms employed by cis-encoded antisense RNAsQ34612437
Specific binding of sso II DNA methyltransferase to its promoter region provides the regulation of sso II restriction-modification gene expressionQ34630004
Anatomy of Escherichia coli sigma70 promoters.Q35658237
Defining the consensus sequences of E.coli promoter elements by random selectionQ36061922
Negative regulation of the EcoRI restriction enzyme gene is associated with intragenic reverse promotersQ36098384
A family of regulatory genes associated with type II restriction-modification systemsQ36130467
Regulatory circuit based on autogenous activation-repression: roles of C-boxes and spacer sequences in control of the PvuII restriction-modification systemQ36328842
Real-time kinetics of restriction-modification gene expression after entry into a new host cellQ36649639
From damaged genome to cell surface: transcriptome changes during bacterial cell death triggered by loss of a restriction-modification gene complex.Q37199542
Transcription regulation of restriction-modification system Ecl18kI.Q37384791
Restriction-modification gene complexes as selfish gene entities: roles of a regulatory system in their establishment, maintenance, and apoptotic mutual exclusionQ37423487
Determination of the optimal aligned spacing between the Shine-Dalgarno sequence and the translation initiation codon of Escherichia coli mRNAsQ37587211
Transcriptional interference and repression modulate the conjugative ability of the symbiotic plasmid of Rhizobium etli.Q39320820
DNA methylation at the CfrBI site is involved in expression control in the CfrBI restriction-modification systemQ39584548
Characterization of the intergenic region which regulates the MspI restriction-modification systemQ39844378
The methyltransferase from the LlaDII restriction-modification system influences the level of expression of its own geneQ40387834
Regulation of EcoRII methyltransferase: effect of mutations on gene expression and in vitro binding to the promoter regionQ40523155
Cleavage of a model DNA replication fork by a Type I restriction endonuclease.Q41300410
Potent transcriptional interference by pausing of RNA polymerases over a downstream promoterQ41451057
Action at a distance in CI repressor regulation of the bacteriophage 186 genetic switchQ41897415
Dissection of the switch between genes for replication and transfer of promiscuous plasmid RK2: basis of the dominance of trfAp over trbAp and specificity for KorA in controlling the switchQ42651003
SsoII-like DNA-methyltransferase Ecl18kI: interaction between regulatory and methylating functionsQ44807578
A mathematical model for transcriptional interference by RNA polymerase traffic in Escherichia coliQ47864746
P275copyright licenseCreative Commons Attribution-NonCommercial 2.5 GenericQ19113746
P6216copyright statuscopyrightedQ50423863
P433issue13
P407language of work or nameEnglishQ1860
P304page(s)5622-5632
P577publication date2011-03-31
P1433published inNucleic Acids ResearchQ135122
P1476titleAntisense RNA associated with biological regulation of a restriction-modification system
P478volume39

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cites work (P2860)
Q36963254A bistable hysteretic switch in an activator-repressor regulated restriction-modification system.
Q38154090Highlights of the DNA cutters: a short history of the restriction enzymes
Q90297236Low level expression of the Type II restriction-modification system confers potent bacteriophage resistance in Escherichia coli
Q38088545Mobility of DNA sequence recognition domains in DNA methyltransferases suggests epigenetics-driven adaptive evolution
Q36775471Natural C-independent expression of restriction endonuclease in a C protein-associated restriction-modification system
Q64065208Natural tuning of restriction endonuclease synthesis by cluster of rare arginine codons
Q26865951To be or not to be: regulation of restriction-modification systems and other toxin-antitoxin systems
Q35813422Transmission of the PabI family of restriction DNA glycosylase genes: mobility and long-term inheritance
Q36361675Understanding key features of bacterial restriction-modification systems through quantitative modeling

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