review article | Q7318358 |
scholarly article | Q13442814 |
P6179 | Dimensions Publication ID | 1030749434 |
P356 | DOI | 10.1038/NRMICRO2283 |
P698 | PubMed publication ID | 20140025 |
P5875 | ResearchGate publication ID | 41414533 |
P2093 | author name string | Michael P Jennings | |
Yogitha N Srikhanta | |||
Kate L Fox | |||
P2860 | cites work | Type I restriction systems: sophisticated molecular machines (a legacy of Bertani and Weigle) | Q24548508 |
Short-sequence DNA repeats in prokaryotic genomes | Q24548611 | ||
Nucleoside triphosphate-dependent restriction enzymes | Q24555228 | ||
Structure and function of type II restriction endonucleases | Q24555230 | ||
Phase and antigenic variation in bacteria | Q24561666 | ||
Regulation of endonuclease activity by proteolysis prevents breakage of unmodified bacterial chromosomes by type I restriction enzymes | Q24655282 | ||
Epigenetic gene regulation in the bacterial world | Q24669987 | ||
Characterization of the Type III restriction endonuclease PstII from Providencia stuartii. | Q24816456 | ||
Subunit assembly modulates the activities of the Type III restriction-modification enzyme PstII in vitro | Q24816467 | ||
Slipped-strand mispairing: a major mechanism for DNA sequence evolution | Q28295992 | ||
The major phase-variable outer membrane protein of Escherichia coli structurally resembles the immunoglobulin A1 protease class of exported protein and is regulated by a novel mechanism involving Dam and oxyR | Q30175814 | ||
Fast-scan atomic force microscopy reveals that the type III restriction enzyme EcoP15I is capable of DNA translocation and looping | Q30479841 | ||
Characterization of a CACAG pentanucleotide repeat in Pasteurella haemolytica and its possible role in modulation of a novel type III restriction-modification system | Q30642496 | ||
Families of restriction enzymes: an analysis prompted by molecular and genetic data for type ID restriction and modification systems | Q30662423 | ||
Reassortment of pilin genes in Neisseria gonorrhoeae occurs by two distinct mechanisms | Q56984407 | ||
Variations in the surface proteins and restriction enzyme systems of Mycoplasma pulmonis in the respiratory tract of infected rats | Q57916398 | ||
Repeat-associated phase variable genes in the complete genome sequence of Neisseria meningitidis strain MC58 | Q57976193 | ||
Restriction-modification systems in Mycoplasma spp | Q61037744 | ||
DNA cleavage by the type IC restriction-modification enzyme EcoR124II | Q64389312 | ||
The outer membrane protein, antigen 43, mediates cell-to-cell interactions within Escherichia coli biofilms | Q64449674 | ||
DNA restriction--modification genes of phage P1 and plasmid p15B. Structure and in vitro transcription | Q67286988 | ||
DNA restriction--modification enzymes of phage P1 and plasmid p15B. Subunit functions and structural homologies | Q67286996 | ||
DNA Modification and Restriction | Q69353381 | ||
Host specificity of DNA produced by Escherichia coli. XII. The two restriction and modification systems of strain 15T- | Q69920009 | ||
Phase variation of Ag43 in Escherichia coli: Dam-dependent methylation abrogates OxyR binding and OxyR-mediated repression of transcription | Q73486820 | ||
Comparative whole-genome analyses reveal over 100 putative phase-variable genes in the pathogenic Neisseria spp | Q74339153 | ||
Kinetic models of translocation, head-on collision, and DNA cleavage by type I restriction endonucleases | Q77594570 | ||
Direct observation of DNA translocation and cleavage by the EcoKI endonuclease using atomic force microscopy | Q77787225 | ||
The role of Dam methylation in phase variation of Haemophilus influenzae genes involved in defence against phage infection | Q81317030 | ||
Methylation and cleavage sequences of the EcoP1 restriction-modification enzyme | Q40218789 | ||
DNA recognition and cleavage by the EcoP15 restriction endonuclease | Q40289784 | ||
Phase-variable lipopolysaccharide structures enhance the invasive capacity of Haemophilus influenzae | Q40428771 | ||
An essential role for DNA adenine methylation in bacterial virulence | Q40639021 | ||
Translational frameshifting in the control of transposition in bacteria | Q40852573 | ||
Characterization of a restriction enzyme from Escherichia coli K carrying a mutation in the modification subunit | Q40934053 | ||
DNA adenine methylation regulates virulence gene expression in Salmonella enterica serovar Typhimurium. | Q41063123 | ||
Endonuclease (R) subunits of type-I and type-III restriction-modification enzymes contain a helicase-like domain | Q41131058 | ||
Overproduction of DNA adenine methyltransferase alters motility, invasion, and the lipopolysaccharide O-antigen composition of Yersinia enterocolitica | Q41447666 | ||
Oral immunization with a dam mutant of Yersinia pseudotuberculosis protects against plague | Q41458134 | ||
Regulation of Pap phase variation. Lrp is sufficient for the establishment of the phase off pap DNA methylation pattern and repression of pap transcription in vitro | Q41716758 | ||
Dam methyltransferase is required for stable lysogeny of the Shiga toxin (Stx2)-encoding bacteriophage 933W of enterohemorrhagic Escherichia coli O157:H7 | Q41911686 | ||
DNA looping and translocation provide an optimal cleavage mechanism for the type III restriction enzymes | Q42002446 | ||
The length of a tetranucleotide repeat tract in Haemophilus influenzae determines the phase variation rate of a gene with homology to type III DNA methyltransferases. | Q42617085 | ||
A third family of allelic hsd genes in Salmonella enterica: sequence comparisons with related proteins identify conserved regions implicated in restriction of DNA. | Q42645045 | ||
Molecular characterization of LbpB, the second lactoferrin-binding protein of Neisseria meningitidis. | Q42673499 | ||
Simple sequence repeats in the Helicobacter pylori genome | Q42676800 | ||
High allelic diversity in the methyltransferase gene of a phase variable type III restriction-modification system has implications for the fitness of Haemophilus influenzae | Q43056361 | ||
S-adenosyl-L-methionine is required for DNA cleavage by type III restriction enzymes | Q43648772 | ||
Genomic comparisons among gamma-proteobacteria | Q43674825 | ||
DNA cleavage by type III restriction-modification enzyme EcoP15I is independent of spacer distance between two head to head oriented recognition sites | Q43749963 | ||
Envelope instability in DNA adenine methylase mutants of Salmonella enterica | Q43947009 | ||
Posttranscriptional regulation of EcoP1I and EcoP15I restriction activity | Q43980444 | ||
S-Adenosyl Methionine Prevents Promiscuous DNA Cleavage by the EcoP1I type III Restriction Enzyme | Q44608364 | ||
The bacteriophage P1 restriction endonuclease | Q44914916 | ||
Stopped-flow and mutational analysis of base flipping by the Escherichia coli Dam DNA-(adenine-N6)-methyltransferase | Q44995080 | ||
The DNA translocation and ATPase activities of restriction-deficient mutants of Eco KI. | Q45070688 | ||
Phase variable restriction-modification systems in Moraxella catarrhalis | Q45183866 | ||
Host specificity of DNA in Haemophilus influenzae: the restriction and modification systems in strains Rb and Rf. | Q45240020 | ||
Effect of repeated in vivo passage (in mice) on Salmonella typhimurium dam mutant virulence and fitness | Q46821029 | ||
The diversity within an expanded and redefined repertoire of phase-variable genes in Helicobacter pylori | Q47792946 | ||
Structure-guided analysis reveals nine sequence motifs conserved among DNA amino-methyltransferases, and suggests a catalytic mechanism for these enzymes | Q48069333 | ||
Alteration of DNA adenine methylase (Dam) activity in Pasteurella multocida causes increased spontaneous mutation frequency and attenuation in mice | Q48233604 | ||
Type III DNA restriction and modification systems EcoP1 and EcoP15. Nucleotide sequence of the EcoP1 operon, the EcoP15 mod gene and some EcoP1 mod mutants | Q48327658 | ||
Sequence diversity among related genes for recognition of specific targets in DNA molecules | Q48398543 | ||
2001 Fred Griffith review lecture. Immigration control of DNA in bacteria: self versus non-self | Q48575149 | ||
DNA methylation-dependent regulation of pef expression in Salmonella typhimurium | Q50122267 | ||
Increased adherence and actin pedestal formation by dam-deficient enterohaemorrhagic Escherichia coli O157:H7. | Q50696981 | ||
Microbial genetics. The tinkerer's evolving tool-box. | Q52262067 | ||
A Dam methylation mutant of Klebsiella pneumoniae is partially attenuated. | Q52577360 | ||
Scanning force microscopy of DNA translocation by the Type III restriction enzyme EcoP15I. | Q52943618 | ||
Overcoming the restriction barrier to plasmid transformation of Helicobacter pylori. | Q54038143 | ||
Restriction-modification system differences in Helicobacter pylori are a barrier to interstrain plasmid transfer. | Q54038147 | ||
Type III restriction enzymes need two inversely oriented recognition sites for DNA cleavage | Q55043499 | ||
BASE FLIPPING | Q56256582 | ||
Signature Tagged Mutagenesis of Haemophilus influenzae identifies genes required for in vivo survival | Q30873470 | ||
KpnBI is the prototype of a new family (IE) of bacterial type I restriction-modification system | Q30969015 | ||
The proteolytic control of restriction activity in Escherichia coli K-12. | Q31795891 | ||
Subunit assembly and mode of DNA cleavage of the type III restriction endonucleases EcoP1I and EcoP15I. | Q31937862 | ||
Phasevarions mediate random switching of gene expression in pathogenic Neisseria | Q33434451 | ||
Salmonella DNA adenine methylase mutants confer cross-protective immunity | Q33552366 | ||
Molecular characterization of the 98-kilodalton iron-regulated outer membrane protein of Neisseria meningitidis | Q33614142 | ||
ATP-dependent restriction enzymes | Q33851803 | ||
DNA translocation blockage, a general mechanism of cleavage site selection by type I restriction enzymes | Q33890885 | ||
Regulation of pap pilin phase variation by a mechanism involving differential dam methylation states | Q33923349 | ||
The phasevarion: a genetic system controlling coordinated, random switching of expression of multiple genes | Q33936713 | ||
Roles of DNA adenine methylation in regulating bacterial gene expression and virulence | Q34009521 | ||
DNA adenine methylase is essential for viability and plays a role in the pathogenesis of Yersinia pseudotuberculosis and Vibrio cholerae | Q34009783 | ||
Inside a living cell | Q34014156 | ||
Deoxyribonucleic acid restriction and modification systems in Salmonella: chromosomally located systems of different serotypes | Q34111951 | ||
DNA adenine methylase overproduction in Yersinia pseudotuberculosis alters YopE expression and secretion and host immune responses to infection | Q34117830 | ||
Roles of DNA adenine methylation in host-pathogen interactions: mismatch repair, transcriptional regulation, and more. | Q34135626 | ||
Complex restriction enzymes: NTP-driven molecular motors | Q34178514 | ||
DNA Restriction Enzyme from E. coli | Q34220586 | ||
DNA restriction and modification mechanisms in bacteria | Q34224398 | ||
Host specificity of DNA produced by Escherichia coli. I. Host controlled modification of bacteriophage lambda | Q34251434 | ||
S-Adenosyl-L-methionine-dependent restriction enzymes | Q34317912 | ||
Transcriptional phase variation of a type III restriction-modification system in Helicobacter pylori | Q34320449 | ||
Conservation of motifs within the unusually variable polypeptide sequences of type I restriction and modification enzymes | Q34358530 | ||
Phase variation of H. influenzae fimbriae: transcriptional control of two divergent genes through a variable combined promoter region. | Q34366696 | ||
Playing Dr Jekyll and Mr Hyde: combined mechanisms of phase variation in bacteria | Q34392578 | ||
Recognition and cleavage of DNA by type-II restriction endonucleases | Q34431350 | ||
Comparative genomics of the restriction-modification systems in Helicobacter pylori | Q34489772 | ||
Haemophilus influenzae phasevarions have evolved from type III DNA restriction systems into epigenetic regulators of gene expression. | Q34659322 | ||
How to proteins move along DNA? Lessons from type-I and type-III restriction endonucleases | Q35020190 | ||
Genetic variation in pathogenic bacteria | Q35277088 | ||
Variable expression of class 1 outer membrane protein in Neisseria meningitidis is caused by variation in the spacing between the -10 and -35 regions of the promoter. | Q35584590 | ||
DNA adenine methylase mutants of Salmonella typhimurium show defects in protein secretion, cell invasion, and M cell cytotoxicity | Q35657182 | ||
The biology of restriction and anti-restriction | Q36175695 | ||
Functional analysis of the M.HpyAIV DNA methyltransferase of Helicobacter pylori | Q36314651 | ||
The GATC-binding protein SeqA is required for bile resistance and virulence in Salmonella enterica serovar typhimurium | Q36315344 | ||
Natural transformation of Neisseria gonorrhoeae: from DNA donation to homologous recombination | Q36359422 | ||
Re-examining the role and random nature of phase variation | Q36381528 | ||
N6-methyl-adenine: an epigenetic signal for DNA-protein interactions | Q36401376 | ||
Natural genetic exchange between Haemophilus and Neisseria: intergeneric transfer of chromosomal genes between major human pathogens | Q36524212 | ||
Structure, function and mechanism of exocyclic DNA methyltransferases | Q36598928 | ||
Bacterial contingency loci: the role of simple sequence DNA repeats in bacterial adaptation | Q36649037 | ||
A family of phase-variable restriction enzymes with differing specificities generated by high-frequency gene rearrangements | Q36812335 | ||
The restriction-modification system of Pasteurella haemolytica is a member of a new family of type I enzymes | Q36832889 | ||
Phase variable type III restriction-modification systems of host-adapted bacterial pathogens | Q36917132 | ||
Role of the Campylobacter jejuni Cj1461 DNA methyltransferase in regulating virulence characteristics | Q36933207 | ||
Regulation of the Salmonella enterica std fimbrial operon by DNA adenine methylation, SeqA, and HdfR. | Q36958056 | ||
Type III restriction enzymes communicate in 1D without looping between their target sites | Q37078204 | ||
DNA repeats identify novel virulence genes in Haemophilus influenzae | Q37312114 | ||
ATP-induced conformational changes in the restriction endonuclease from Escherichia coli K-12 | Q37589808 | ||
Differential binding of Lrp to two sets of pap DNA binding sites mediated by Pap I regulates Pap phase variation in Escherichia coli. | Q37625420 | ||
A mutational analysis of the two motifs common to adenine methyltransferases. | Q37635562 | ||
Type III restriction endonucleases translocate DNA in a reaction driven by recognition site-specific ATP hydrolysis | Q37698719 | ||
Colonization of germ-free transgenic mice with genotyped Helicobacter pylori strains from a case-control study of gastric cancer reveals a correlation between host responses and HsdS components of type I restriction-modification systems | Q38287381 | ||
Molecular analysis of a locus for the biosynthesis and phase-variable expression of the lacto-N-neotetraose terminal lipopolysaccharide structure in Neisseria meningitidis | Q38289637 | ||
DNA recognition by the EcoP15I and EcoPI modification methyltransferases | Q38295255 | ||
Interaction of EcoP15I DNA methyltransferase with oligonucleotides containing the asymmetric sequence 5'-CAGCAG-3'. | Q38304144 | ||
Binding of EcoP15I DNA methyltransferase to DNA reveals a large structural distortion within the recognition sequence | Q38312746 | ||
Functional analysis of conserved motifs in type III restriction-modification enzymes | Q38336578 | ||
Mutations in the Res subunit of the EcoPI restriction enzyme that affect ATP-dependent reactions | Q38345023 | ||
Specificities of eleven different DNA methyltransferases of Helicobacter pylori strain 26695 | Q39501893 | ||
Heat-inducible surface stress protein (Hsp70) mediates sulfatide recognition of the respiratory pathogen Haemophilus influenzae. | Q39520129 | ||
Functional analysis of putative restriction-modification system genes in the Helicobacter pylori J99 genome | Q39584191 | ||
Genomic repeats, genome plasticity and the dynamics of Mycoplasma evolution | Q39600720 | ||
Purification and properties of the P15 specific restriction endonuclease from Escherichia coli | Q39799531 | ||
Brief heat shock treatment induces a long-lasting alteration in the glycolipid receptor binding specificity and growth rate of Haemophilus influenzae | Q39829711 | ||
Transfer of the genes for the StyLTI restriction-modification system of Salmonella typhimurium to strains lacking modification ability results in death of the recipient cells and degradation of their DNA | Q39939110 | ||
DNA communications by Type III restriction endonucleases--confirmation of 1D translocation over 3D looping | Q39946292 | ||
P433 | issue | 3 | |
P407 | language of work or name | English | Q1860 |
P304 | page(s) | 196-206 | |
P577 | publication date | 2010-02-08 | |
P1433 | published in | Nature Reviews Microbiology | Q1071797 |
P1476 | title | The phasevarion: phase variation of type III DNA methyltransferases controls coordinated switching in multiple genes | |
P478 | volume | 8 |
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Q36323846 | A genetic switch controls the production of flagella and toxins in Clostridium difficile |
Q34310334 | A random six-phase switch regulates pneumococcal virulence via global epigenetic changes |
Q52648650 | A survey of Type III restriction-modification systems reveals numerous, novel epigenetic regulators controlling phase-variable regulons; phasevarions. |
Q34400711 | A variable homopolymeric G-repeat defines small RNA-mediated posttranscriptional regulation of a chemotaxis receptor in Helicobacter pylori |
Q37070358 | Analysis of nontypeable haemophilus influenzae phase-variable genes during experimental human nasopharyngeal colonization |
Q35120837 | Antisense RNA associated with biological regulation of a restriction-modification system |
Q39003514 | Bacterial DNA Methylation and Methylomes |
Q36537965 | Broad conditions favor the evolution of phase-variable loci. |
Q53076840 | Campylobacter jejuni transcriptional and genetic adaptation during human infection. |
Q33812805 | Candidatus Mycoplasma girerdii replicates, diversifies, and co-occurs with Trichomonas vaginalis in the oral cavity of a premature infant |
Q42108715 | Cleavage of a model DNA replication fork by a methyl-specific endonuclease. |
Q40285952 | Comparative genome analysis reveals important genetic differences among serotype O1 and serotype O2 strains of Y. ruckeri and provides insights into host adaptation and virulence |
Q58085053 | Comparative genomic and methylome analysis of non-virulent D74 and virulent Nagasaki Haemophilus parasuis isolates |
Q89930481 | Complete genome and methylome analysis of Neisseria meningitidis associated with increased serogroup Y disease |
Q99585781 | Contribution of DNA adenine methylation to gene expression heterogeneity in Salmonella enterica |
Q90463939 | Deciphering bacterial epigenomes using modern sequencing technologies |
Q21134930 | Deep sequencing whole transcriptome exploration of the σE regulon in Neisseria meningitidis |
Q35598777 | Deletion of one nucleotide within the homonucleotide tract present in the hsdS gene alters the DNA sequence specificity of type I restriction-modification system NgoAV |
Q34513606 | Distribution of the type III DNA methyltransferases modA, modB and modD among Neisseria meningitidis genotypes: implications for gene regulation and virulence. |
Q33886643 | Domain movement within a gene: a novel evolutionary mechanism for protein diversification. |
Q24629701 | Entering the era of bacterial epigenomics with single molecule real time DNA sequencing |
Q36079875 | Epigenetic Switch Driven by DNA Inversions Dictates Phase Variation in Streptococcus pneumoniae. |
Q35153520 | Evidence for an evolutionary antagonism between Mrr and Type III modification systems |
Q51326292 | Evolution of simple sequence repeat-mediated phase variation in bacterial genomes. |
Q37253104 | Exploring the roles of DNA methylation in the metal-reducing bacterium Shewanella oneidensis MR-1. |
Q36250210 | Expression of IgA Proteases by Haemophilus influenzae in the Respiratory Tract of Adults With Chronic Obstructive Pulmonary Disease |
Q37798011 | Genetic shifts ofNeisseria meningitidisserogroup B antigens and the quest for a broadly cross-protective vaccine |
Q90663459 | Genetic variation regulates the activation and specificity of Restriction-Modification systems in Neisseria gonorrhoeae |
Q30419110 | Genomic mapping of phosphorothioates reveals partial modification of short consensus sequences |
Q30437973 | Global methylation state at base-pair resolution of the Caulobacter genome throughout the cell cycle |
Q42283711 | Horizontal transfer of DNA methylation patterns into bacterial chromosomes |
Q26782340 | How the Knowledge of Interactions between Meningococcus and the Human Immune System Has Been Used to Prepare Effective Neisseria meningitidis Vaccines |
Q42357253 | Identification of DNA Methyltransferase Genes in Human Pathogenic Bacteria by Comparative Genomics |
Q30541484 | Identification of the nature of reading frame transitions observed in prokaryotic genomes |
Q93380766 | Kinetic and catalytic properties of M.HpyAXVII, a phase-variable DNA methyltransferase from Helicobacter pylori |
Q90629856 | Localized Hypermutation is the Major Driver of Meningococcal Genetic Variability during Persistent Asymptomatic Carriage |
Q60912015 | Metaepigenomic analysis reveals the unexplored diversity of DNA methylation in an environmental prokaryotic community |
Q57900155 | Metatranscriptome analysis of the reef-building coral Orbicella faveolata indicates holobiont response to coral disease |
Q38088545 | Mobility of DNA sequence recognition domains in DNA methyltransferases suggests epigenetics-driven adaptive evolution |
Q36305686 | Movement of DNA sequence recognition domains between non-orthologous proteins. |
Q91199458 | Neisseria meningitidis: using genomics to understand diversity, evolution and pathogenesis |
Q30080007 | Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data |
Q64967673 | Occurrence, evolution, and functions of DNA phosphorothioate epigenetics in bacteria. |
Q34211653 | Origin of the diversity in DNA recognition domains in phasevarion associated modA genes of pathogenic Neisseria and Haemophilus influenzae |
Q89481909 | Panel 3: Genomics, precision medicine and targeted therapies |
Q36525717 | Passage of Campylobacter jejuni through the chicken reservoir or mice promotes phase variation in contingency genes Cj0045 and Cj0170 that strongly associates with colonization and disease in a mouse model |
Q34509855 | Phase variation of a Type IIG restriction-modification enzyme alters site-specific methylation patterns and gene expression in Campylobacter jejuni strain NCTC11168 |
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Q34097569 | Phasevarion mediated epigenetic gene regulation in Helicobacter pylori |
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Q41082178 | Phasevarions mediate epigenetic regulation of antimicrobial susceptibility in Neisseria meningitidis. |
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Q38099632 | Programmed heterogeneity: epigenetic mechanisms in bacteria |
Q51575920 | Pseudomonas syringae Differentiates into Phenotypically Distinct Subpopulations During Colonization of a Plant Host. |
Q34273732 | STM2209-STM2208 (opvAB): a phase variation locus of Salmonella enterica involved in control of O-antigen chain length |
Q90418149 | Selective and non-selective bottlenecks as drivers of the evolution of hypermutable bacterial loci |
Q35813616 | Single molecule-level detection and long read-based phasing of epigenetic variations in bacterial methylomes |
Q61800366 | Single-molecule sequencing detection of N6-methyladenine in microbial reference materials |
Q36539205 | Specific IgA and metalloproteinase activity in bronchial secretions from stable chronic obstructive pulmonary disease patients colonized by Haemophilus influenzae |
Q34470436 | Specificity of the ModA11, ModA12 and ModD1 epigenetic regulator N(6)-adenine DNA methyltransferases of Neisseria meningitidis. |
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Q57285690 | Streptococcus suis contains multiple phase-variable methyltransferases that show a discrete lineage distribution |
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Q28550136 | The Epigenomic Landscape of Prokaryotes |
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Q91287194 | The bacterial epigenome |
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Q34722544 | The dam replacing gene product enhances Neisseria gonorrhoeae FA1090 viability and biofilm formation. |
Q41923111 | The impact of bottlenecks on microbial survival, adaptation and phenotypic switching in host-pathogen interactions |
Q34433472 | The interplay of restriction-modification systems with mobile genetic elements and their prokaryotic hosts |
Q24598577 | The methylomes of six bacteria |
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