Complex restriction enzymes: NTP-driven molecular motors

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Complex restriction enzymes: NTP-driven molecular motors is …
instance of (P31):
review articleQ7318358
scholarly articleQ13442814

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P356DOI10.1016/S0300-9084(02)00020-2
P698PubMed publication ID12595133

P2093author name stringThomas A Bickle
Aude A Bourniquel
P2860cites workType I restriction systems: sophisticated molecular machines (a legacy of Bertani and Weigle)Q24548508
Nucleoside triphosphate-dependent restriction enzymesQ24555228
Two related superfamilies of putative helicases involved in replication, recombination, repair and expression of DNA and RNA genomesQ24635818
FokI dimerization is required for DNA cleavageQ24657843
Structure of FokI has implications for DNA cleavageQ24657897
Surface labelling of the type I methyltransferase M.EcoR124I reveals lysine residues critical for DNA bindingQ71039730
Complexes formed between the restriction endonuclease EcoK and heteroduplex DNAQ72927092
A novel mutant of the type I restriction-modification enzyme EcoR124I is altered at a key stage of the subunit assembly pathwayQ73220618
DNA supercoiling during ATP-dependent DNA translocation by the type I restriction enzyme EcoAIQ73405013
The recognition of methylated DNA by the GTP-dependent restriction endonuclease McrBC resides in the N-terminal domain of McrBQ73826824
Probing the role of cysteine residues in the EcoP15I DNA methyltransferaseQ77195407
Kinetic models of translocation, head-on collision, and DNA cleavage by type I restriction endonucleasesQ77594570
Direct observation of DNA translocation and cleavage by the EcoKI endonuclease using atomic force microscopyQ77787225
On the structure and operation of type I DNA restriction enzymesQ77950115
Crystal structures of complexes of PcrA DNA helicase with a DNA substrate indicate an inchworm mechanismQ27617870
The McrBC restriction endonuclease assembles into a ring structure in the presence of G nucleotidesQ28366813
Subunit assembly and mode of DNA cleavage of the type III restriction endonucleases EcoP1I and EcoP15I.Q31937862
Roles of selection and recombination in the evolution of type I restriction-modification systems in enterobacteriaQ33191676
Mutations the confer de Novo activity upon a maintenance methyltransferaseQ33323418
Model for how type I restriction enzymes select cleavage sites in DNA.Q33584495
McrBs, a modulator peptide for McrBC activity.Q33889516
DNA translocation blockage, a general mechanism of cleavage site selection by type I restriction enzymesQ33890885
Host specificity of DNA produced by Escherichia coli. I. Host controlled modification of bacteriophage lambdaQ34251434
REBASE--restriction enzymes and methylases.Q34323893
Conservation of motifs within the unusually variable polypeptide sequences of type I restriction and modification enzymesQ34358530
Recognition and cleavage of DNA by type-II restriction endonucleasesQ34431350
A prediction of the amino acids and structures involved in DNA recognition by type I DNA restriction and modification enzymesQ34634843
S-adenosyl methionine alters the DNA contacts of the EcoKI methyltransferaseQ34742839
Organization and function of the mcrBC genes of Escherichia coli K‐12Q35228347
Conservation of organization in the specificity polypeptides of two families of type I restriction enzymesQ35597794
Site-specific methylases induce the SOS DNA repair response in Escherichia coliQ36240244
EcoA: the first member of a new family of type I restriction modification systems. Gene organization and enzymatic activitiesQ36424348
Translocation and specific cleavage of bacteriophage T7 DNA in vivo by EcoKI.Q36541346
A family of phase-variable restriction enzymes with differing specificities generated by high-frequency gene rearrangementsQ36812335
Escherichia coli K-12 restricts DNA containing 5-methylcytosineQ37409547
Genetic recombination can generate altered restriction specificityQ37570816
ATP-induced conformational changes in the restriction endonuclease from Escherichia coli K-12Q37589808
A mutational analysis of the two motifs common to adenine methyltransferases.Q37635562
The GTP-dependent restriction enzyme McrBC from Escherichia coli forms high-molecular mass complexes with DNA and produces a cleavage pattern with a characteristic 10-base pair repeat.Q38290163
DNA recognition by the EcoP15I and EcoPI modification methyltransferasesQ38295255
Interaction of EcoP15I DNA methyltransferase with oligonucleotides containing the asymmetric sequence 5'-CAGCAG-3'.Q38304144
Measuring motion on DNA by the type I restriction endonuclease EcoR124I using triplex displacementQ38312705
Methyl-specific DNA binding by McrBC, a modification-dependent restriction enzymeQ38312742
Binding of EcoP15I DNA methyltransferase to DNA reveals a large structural distortion within the recognition sequenceQ38312746
DNA recognition by the EcoK methyltransferase. The influence of DNA methylation and the cofactor S-adenosyl-L-methionineQ38314397
Substrate recognition and selectivity in the type IC DNA modification methylase M.EcoR124I.Q38315094
The McrBC endonuclease translocates DNA in a reaction dependent on GTP hydrolysis.Q38323269
Purification and biochemical characterisation of theEcoR124 type I modification methylaseQ38330901
Sequence-specific DNA binding by EcoKI, a type IA DNA restriction enzymeQ38331751
The DNA binding characteristics of the trimeric EcoKI methyltransferase and its partially assembled dimeric form determined by fluorescence polarisation and DNA footprintingQ38331756
The hsd loci of Mycoplasma pulmonis: organization, rearrangements and expression of genesQ38340657
Functional analysis of conserved motifs in EcoP15I DNA methyltransferaseQ38356849
ATPase activity of the type IC restriction-modification system EcoR124II.Q38358807
High resolution footprinting of a type I methyltransferase reveals a large structural distortion within the DNA recognition siteQ39718396
The HsdR subunit of R.EcoR124II: cloning and over-expression of the gene and unexpected properties of the subunitQ39719072
The specificity of sty SKI, a type I restriction enzyme, implies a structure with rotational symmetryQ39719811
EcoKI with an amino acid substitution in any one of seven DEAD-box motifs has impaired ATPase and endonuclease activitiesQ39725548
Single amino acid substitutions in the HsdR subunit of the type IB restriction enzyme EcoAI uncouple the DNA translocation and DNA cleavage activities of the enzymeQ39728209
Nucleotide sequence of the McrB region of Escherichia coli K-12 and evidence for two independent translational initiation sites at the mcrB locusQ39948582
Genetic and sequence organization of the mcrBC locus of Escherichia coli K-12.Q39960132
Translocation-independent dimerization of the EcoKI endonuclease visualized by atomic force microscopyQ40167374
A deletion mutant of the type IC restriction endonuclease EcoR1241 expressing a novel DNA specificityQ40415571
Nucleotide sequence of the BsuRI restriction-modification system.Q40471693
McrB: a prokaryotic protein specifically recognizing DNA containing modified cytosine residues.Q40806982
Repercussions of DNA tracking by the type IC restriction endonuclease EcoR124I on linear, circular and catenated substrates.Q41078620
Endonuclease (R) subunits of type-I and type-III restriction-modification enzymes contain a helicase-like domainQ41131058
Basis for changes in DNA recognition by the EcoR124 and EcoR124/3 type I DNA restriction and modification enzymesQ41994610
Characterization of the mcrBC region of Escherichia coli K-12 wild-type and mutant strainsQ41999738
Localization of a protein-DNA interface by random mutagenesisQ42095868
A mutational analysis of the PD...D/EXK motif suggests that McrC harbors the catalytic center for DNA cleavage by the GTP-dependent restriction enzyme McrBC from Escherichia coliQ42674314
S-adenosyl-L-methionine is required for DNA cleavage by type III restriction enzymesQ43648772
DNA cleavage by type III restriction-modification enzyme EcoP15I is independent of spacer distance between two head to head oriented recognition sitesQ43749963
Conservation of complex DNA recognition domains between families of restriction enzymesQ44918995
The DNA translocation and ATPase activities of restriction-deficient mutants of Eco KI.Q45070688
Novel type I restriction specificities through domain shuffling of HsdS subunits in Lactococcus lactis.Q47854749
Combinational variation of restriction modification specificities in Lactococcus lactisQ48038064
The type IC hsd loci of the enterobacteria are flanked by DNA with high homology to the phage P1 genome: implications for the evolution and spread of DNA restriction systemsQ48054114
Type III DNA restriction and modification systems EcoP1 and EcoP15. Nucleotide sequence of the EcoP1 operon, the EcoP15 mod gene and some EcoP1 mod mutantsQ48327658
Reassortment of DNA recognition domains and the evolution of new specificitiesQ48342551
Sequence diversity among related genes for recognition of specific targets in DNA moleculesQ48398543
New restriction endonucleases from Flavobacterium okeanokoites (FokI) and Micrococcus luteus (MluI).Q48407304
A hybrid recognition sequence in a recombinant restriction enzyme and the evolution of DNA sequence specificityQ50205462
Two type I restriction enzymes from Salmonella species. Purification and DNA recognition sequencesQ50205923
DNA restriction and modification systems in Salmonella. SQ, a new system derived by recombination between the SB system of Salmonella typhimurium and the SP system of Salmonella potsdamQ50227360
The GTP-binding domain of McrB: more than just a variation on a common theme?Q52895260
Characterization of the interaction between the restriction endonuclease McrBC from E. coli and its cofactor GTP.Q54558751
The type I restriction endonuclease R.EcoR124I: over-production and biochemical properties.Q54590138
Identification of a second polypeptide required for McrB restriction of 5-methylcytosine-containing DNA in Escherichia coli K12.Q54731658
Cytosine-specific DNA modification interferes with plasmid establishment in Escherichia coli K12: involvement of rglB.Q54772033
Type III restriction enzymes need two inversely oriented recognition sites for DNA cleavageQ55043499
McrBC: a multisubunit GTP-dependent restriction endonucleaseQ58032884
DNA cleavage by the type IC restriction-modification enzyme EcoR124IIQ64389312
Multiple steps in DNA recognition by restriction endonuclease from E. coli KQ66900410
DNA restriction--modification genes of phage P1 and plasmid p15B. Structure and in vitro transcriptionQ67286988
High-level expression of the cloned genes encoding the subunits of and intact DNA methyltransferase, M.EcoR124Q68079186
The alternate expression of two restriction and modification systemsQ70258682
P433issue11
P921main subjectmolecular motorQ423905
P304page(s)1047-1059
P577publication date2002-11-01
P1433published inBiochimieQ2904035
P1476titleComplex restriction enzymes: NTP-driven molecular motors
P478volume84

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cites work (P2860)
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