review article | Q7318358 |
scholarly article | Q13442814 |
P356 | DOI | 10.1016/S0300-9084(02)00020-2 |
P698 | PubMed publication ID | 12595133 |
P2093 | author name string | Thomas A Bickle | |
Aude A Bourniquel | |||
P2860 | cites work | Type I restriction systems: sophisticated molecular machines (a legacy of Bertani and Weigle) | Q24548508 |
Nucleoside triphosphate-dependent restriction enzymes | Q24555228 | ||
Two related superfamilies of putative helicases involved in replication, recombination, repair and expression of DNA and RNA genomes | Q24635818 | ||
FokI dimerization is required for DNA cleavage | Q24657843 | ||
Structure of FokI has implications for DNA cleavage | Q24657897 | ||
Surface labelling of the type I methyltransferase M.EcoR124I reveals lysine residues critical for DNA binding | Q71039730 | ||
Complexes formed between the restriction endonuclease EcoK and heteroduplex DNA | Q72927092 | ||
A novel mutant of the type I restriction-modification enzyme EcoR124I is altered at a key stage of the subunit assembly pathway | Q73220618 | ||
DNA supercoiling during ATP-dependent DNA translocation by the type I restriction enzyme EcoAI | Q73405013 | ||
The recognition of methylated DNA by the GTP-dependent restriction endonuclease McrBC resides in the N-terminal domain of McrB | Q73826824 | ||
Probing the role of cysteine residues in the EcoP15I DNA methyltransferase | Q77195407 | ||
Kinetic models of translocation, head-on collision, and DNA cleavage by type I restriction endonucleases | Q77594570 | ||
Direct observation of DNA translocation and cleavage by the EcoKI endonuclease using atomic force microscopy | Q77787225 | ||
On the structure and operation of type I DNA restriction enzymes | Q77950115 | ||
Crystal structures of complexes of PcrA DNA helicase with a DNA substrate indicate an inchworm mechanism | Q27617870 | ||
The McrBC restriction endonuclease assembles into a ring structure in the presence of G nucleotides | Q28366813 | ||
Subunit assembly and mode of DNA cleavage of the type III restriction endonucleases EcoP1I and EcoP15I. | Q31937862 | ||
Roles of selection and recombination in the evolution of type I restriction-modification systems in enterobacteria | Q33191676 | ||
Mutations the confer de Novo activity upon a maintenance methyltransferase | Q33323418 | ||
Model for how type I restriction enzymes select cleavage sites in DNA. | Q33584495 | ||
McrBs, a modulator peptide for McrBC activity. | Q33889516 | ||
DNA translocation blockage, a general mechanism of cleavage site selection by type I restriction enzymes | Q33890885 | ||
Host specificity of DNA produced by Escherichia coli. I. Host controlled modification of bacteriophage lambda | Q34251434 | ||
REBASE--restriction enzymes and methylases. | Q34323893 | ||
Conservation of motifs within the unusually variable polypeptide sequences of type I restriction and modification enzymes | Q34358530 | ||
Recognition and cleavage of DNA by type-II restriction endonucleases | Q34431350 | ||
A prediction of the amino acids and structures involved in DNA recognition by type I DNA restriction and modification enzymes | Q34634843 | ||
S-adenosyl methionine alters the DNA contacts of the EcoKI methyltransferase | Q34742839 | ||
Organization and function of the mcrBC genes of Escherichia coli K‐12 | Q35228347 | ||
Conservation of organization in the specificity polypeptides of two families of type I restriction enzymes | Q35597794 | ||
Site-specific methylases induce the SOS DNA repair response in Escherichia coli | Q36240244 | ||
EcoA: the first member of a new family of type I restriction modification systems. Gene organization and enzymatic activities | Q36424348 | ||
Translocation and specific cleavage of bacteriophage T7 DNA in vivo by EcoKI. | Q36541346 | ||
A family of phase-variable restriction enzymes with differing specificities generated by high-frequency gene rearrangements | Q36812335 | ||
Escherichia coli K-12 restricts DNA containing 5-methylcytosine | Q37409547 | ||
Genetic recombination can generate altered restriction specificity | Q37570816 | ||
ATP-induced conformational changes in the restriction endonuclease from Escherichia coli K-12 | Q37589808 | ||
A mutational analysis of the two motifs common to adenine methyltransferases. | Q37635562 | ||
The GTP-dependent restriction enzyme McrBC from Escherichia coli forms high-molecular mass complexes with DNA and produces a cleavage pattern with a characteristic 10-base pair repeat. | Q38290163 | ||
DNA recognition by the EcoP15I and EcoPI modification methyltransferases | Q38295255 | ||
Interaction of EcoP15I DNA methyltransferase with oligonucleotides containing the asymmetric sequence 5'-CAGCAG-3'. | Q38304144 | ||
Measuring motion on DNA by the type I restriction endonuclease EcoR124I using triplex displacement | Q38312705 | ||
Methyl-specific DNA binding by McrBC, a modification-dependent restriction enzyme | Q38312742 | ||
Binding of EcoP15I DNA methyltransferase to DNA reveals a large structural distortion within the recognition sequence | Q38312746 | ||
DNA recognition by the EcoK methyltransferase. The influence of DNA methylation and the cofactor S-adenosyl-L-methionine | Q38314397 | ||
Substrate recognition and selectivity in the type IC DNA modification methylase M.EcoR124I. | Q38315094 | ||
The McrBC endonuclease translocates DNA in a reaction dependent on GTP hydrolysis. | Q38323269 | ||
Purification and biochemical characterisation of theEcoR124 type I modification methylase | Q38330901 | ||
Sequence-specific DNA binding by EcoKI, a type IA DNA restriction enzyme | Q38331751 | ||
The DNA binding characteristics of the trimeric EcoKI methyltransferase and its partially assembled dimeric form determined by fluorescence polarisation and DNA footprinting | Q38331756 | ||
The hsd loci of Mycoplasma pulmonis: organization, rearrangements and expression of genes | Q38340657 | ||
Functional analysis of conserved motifs in EcoP15I DNA methyltransferase | Q38356849 | ||
ATPase activity of the type IC restriction-modification system EcoR124II. | Q38358807 | ||
High resolution footprinting of a type I methyltransferase reveals a large structural distortion within the DNA recognition site | Q39718396 | ||
The HsdR subunit of R.EcoR124II: cloning and over-expression of the gene and unexpected properties of the subunit | Q39719072 | ||
The specificity of sty SKI, a type I restriction enzyme, implies a structure with rotational symmetry | Q39719811 | ||
EcoKI with an amino acid substitution in any one of seven DEAD-box motifs has impaired ATPase and endonuclease activities | Q39725548 | ||
Single amino acid substitutions in the HsdR subunit of the type IB restriction enzyme EcoAI uncouple the DNA translocation and DNA cleavage activities of the enzyme | Q39728209 | ||
Nucleotide sequence of the McrB region of Escherichia coli K-12 and evidence for two independent translational initiation sites at the mcrB locus | Q39948582 | ||
Genetic and sequence organization of the mcrBC locus of Escherichia coli K-12. | Q39960132 | ||
Translocation-independent dimerization of the EcoKI endonuclease visualized by atomic force microscopy | Q40167374 | ||
A deletion mutant of the type IC restriction endonuclease EcoR1241 expressing a novel DNA specificity | Q40415571 | ||
Nucleotide sequence of the BsuRI restriction-modification system. | Q40471693 | ||
McrB: a prokaryotic protein specifically recognizing DNA containing modified cytosine residues. | Q40806982 | ||
Repercussions of DNA tracking by the type IC restriction endonuclease EcoR124I on linear, circular and catenated substrates. | Q41078620 | ||
Endonuclease (R) subunits of type-I and type-III restriction-modification enzymes contain a helicase-like domain | Q41131058 | ||
Basis for changes in DNA recognition by the EcoR124 and EcoR124/3 type I DNA restriction and modification enzymes | Q41994610 | ||
Characterization of the mcrBC region of Escherichia coli K-12 wild-type and mutant strains | Q41999738 | ||
Localization of a protein-DNA interface by random mutagenesis | Q42095868 | ||
A mutational analysis of the PD...D/EXK motif suggests that McrC harbors the catalytic center for DNA cleavage by the GTP-dependent restriction enzyme McrBC from Escherichia coli | Q42674314 | ||
S-adenosyl-L-methionine is required for DNA cleavage by type III restriction enzymes | Q43648772 | ||
DNA cleavage by type III restriction-modification enzyme EcoP15I is independent of spacer distance between two head to head oriented recognition sites | Q43749963 | ||
Conservation of complex DNA recognition domains between families of restriction enzymes | Q44918995 | ||
The DNA translocation and ATPase activities of restriction-deficient mutants of Eco KI. | Q45070688 | ||
Novel type I restriction specificities through domain shuffling of HsdS subunits in Lactococcus lactis. | Q47854749 | ||
Combinational variation of restriction modification specificities in Lactococcus lactis | Q48038064 | ||
The type IC hsd loci of the enterobacteria are flanked by DNA with high homology to the phage P1 genome: implications for the evolution and spread of DNA restriction systems | Q48054114 | ||
Type III DNA restriction and modification systems EcoP1 and EcoP15. Nucleotide sequence of the EcoP1 operon, the EcoP15 mod gene and some EcoP1 mod mutants | Q48327658 | ||
Reassortment of DNA recognition domains and the evolution of new specificities | Q48342551 | ||
Sequence diversity among related genes for recognition of specific targets in DNA molecules | Q48398543 | ||
New restriction endonucleases from Flavobacterium okeanokoites (FokI) and Micrococcus luteus (MluI). | Q48407304 | ||
A hybrid recognition sequence in a recombinant restriction enzyme and the evolution of DNA sequence specificity | Q50205462 | ||
Two type I restriction enzymes from Salmonella species. Purification and DNA recognition sequences | Q50205923 | ||
DNA restriction and modification systems in Salmonella. SQ, a new system derived by recombination between the SB system of Salmonella typhimurium and the SP system of Salmonella potsdam | Q50227360 | ||
The GTP-binding domain of McrB: more than just a variation on a common theme? | Q52895260 | ||
Characterization of the interaction between the restriction endonuclease McrBC from E. coli and its cofactor GTP. | Q54558751 | ||
The type I restriction endonuclease R.EcoR124I: over-production and biochemical properties. | Q54590138 | ||
Identification of a second polypeptide required for McrB restriction of 5-methylcytosine-containing DNA in Escherichia coli K12. | Q54731658 | ||
Cytosine-specific DNA modification interferes with plasmid establishment in Escherichia coli K12: involvement of rglB. | Q54772033 | ||
Type III restriction enzymes need two inversely oriented recognition sites for DNA cleavage | Q55043499 | ||
McrBC: a multisubunit GTP-dependent restriction endonuclease | Q58032884 | ||
DNA cleavage by the type IC restriction-modification enzyme EcoR124II | Q64389312 | ||
Multiple steps in DNA recognition by restriction endonuclease from E. coli K | Q66900410 | ||
DNA restriction--modification genes of phage P1 and plasmid p15B. Structure and in vitro transcription | Q67286988 | ||
High-level expression of the cloned genes encoding the subunits of and intact DNA methyltransferase, M.EcoR124 | Q68079186 | ||
The alternate expression of two restriction and modification systems | Q70258682 | ||
P433 | issue | 11 | |
P921 | main subject | molecular motor | Q423905 |
P304 | page(s) | 1047-1059 | |
P577 | publication date | 2002-11-01 | |
P1433 | published in | Biochimie | Q2904035 |
P1476 | title | Complex restriction enzymes: NTP-driven molecular motors | |
P478 | volume | 84 |
Q44781762 | A concerted DNA methylation/histone methylation switch regulates rRNA gene dosage control and nucleolar dominance |
Q33241520 | A genetic dissection of the LlaJI restriction cassette reveals insights on a novel bacteriophage resistance system |
Q33977856 | A type III-like restriction endonuclease functions as a major barrier to horizontal gene transfer in clinical Staphylococcus aureus strains |
Q42135164 | A type IV modification dependent restriction nuclease that targets glucosylated hydroxymethyl cytosine modified DNAs |
Q40405260 | Alleviation of restriction by DNA condensation and non-specific DNA binding ligands |
Q27670651 | Characterization and crystal structure of the type IIG restriction endonuclease RM.BpuSI |
Q24816456 | Characterization of the Type III restriction endonuclease PstII from Providencia stuartii. |
Q35098243 | Cluster of type IV secretion genes in Helicobacter pylori's plasticity zone |
Q21131312 | Comparative genomics evidence that only protein toxins are tagging bad bugs |
Q26829917 | Comparative genomics of defense systems in archaea and bacteria |
Q22066381 | Comparison of the genome of the oral pathogen Treponema denticola with other spirochete genomes |
Q35023523 | Complete genome sequence of the marine, chemolithoautotrophic, ammonia-oxidizing bacterium Nitrosococcus oceani ATCC 19707. |
Q38535019 | Concerted action at eight phosphodiester bonds by the BcgI restriction endonuclease. |
Q35928818 | Coupling distant sites in DNA during DNA mismatch repair. |
Q39093470 | Crystal structure of the R-protein of the multisubunit ATP-dependent restriction endonuclease NgoAVII. |
Q42957737 | DNA cleavage and methylation specificity of the single polypeptide restriction-modification enzyme LlaGI. |
Q39946292 | DNA communications by Type III restriction endonucleases--confirmation of 1D translocation over 3D looping |
Q42002446 | DNA looping and translocation provide an optimal cleavage mechanism for the type III restriction enzymes |
Q37839479 | DNA translocation by type III restriction enzymes: a comparison of current models of their operation derived from ensemble and single-molecule measurements |
Q36425607 | De novo design of protein mimics of B-DNA |
Q38087543 | Diverse functions of restriction-modification systems in addition to cellular defense |
Q39402483 | Evolutionary Genomics of Defense Systems in Archaea and Bacteria |
Q42965698 | Functional analysis of MmeI from methanol utilizer Methylophilus methylotrophus, a subtype IIC restriction-modification enzyme related to type I enzymes |
Q24563143 | Genome of bacteriophage P1 |
Q43056361 | High allelic diversity in the methyltransferase gene of a phase variable type III restriction-modification system has implications for the fitness of Haemophilus influenzae |
Q38154090 | Highlights of the DNA cutters: a short history of the restriction enzymes |
Q42399985 | Kinetics of Methylation by EcoP1I DNA Methyltransferase |
Q37552862 | Lactococcal plasmid pNP40 encodes a novel, temperature-sensitive restriction-modification system. |
Q36359422 | Natural transformation of Neisseria gonorrhoeae: from DNA donation to homologous recombination |
Q24805170 | On the DNA cleavage mechanism of Type I restriction enzymes |
Q41023221 | One recognition sequence, seven restriction enzymes, five reaction mechanisms. |
Q34097569 | Phasevarion mediated epigenetic gene regulation in Helicobacter pylori |
Q33434451 | Phasevarions mediate random switching of gene expression in pathogenic Neisseria |
Q49917740 | Phasevarions of Bacterial Pathogens: Methylomics Sheds New Light on Old Enemies |
Q42127857 | Purification, crystallization and preliminary X-ray analysis of the HsdR subunit of the EcoR124I endonuclease from Escherichia coli |
Q33288471 | Realm of PD-(D/E)XK nuclease superfamily revisited: detection of novel families with modified transitive meta profile searches |
Q80497535 | Reeling in the bases |
Q27649138 | Restriction Endonuclease Inhibitor IPI* of Bacteriophage T4: A Novel Structure for a Dedicated Target |
Q41770197 | Restriction endonucleases that bridge and excise two recognition sites from DNA. |
Q44608364 | S-Adenosyl Methionine Prevents Promiscuous DNA Cleavage by the EcoP1I type III Restriction Enzyme |
Q39634823 | Structural and evolutionary classification of Type II restriction enzymes based on theoretical and experimental analyses |
Q27650284 | Structures of the Rare-Cutting Restriction Endonuclease NotI Reveal a Unique Metal Binding Fold Involved in DNA Binding |
Q24816467 | Subunit assembly modulates the activities of the Type III restriction-modification enzyme PstII in vitro |
Q21128663 | The AAA+ superfamily of functionally diverse proteins |
Q26772726 | The Role of DNA Restriction-Modification Systems in the Biology of Bacillus anthracis |
Q26851498 | The other face of restriction: modification-dependent enzymes |
Q34097495 | The phasevarion: phase variation of type III DNA methyltransferases controls coordinated switching in multiple genes |
Q35041673 | The role of the methyltransferase domain of bifunctional restriction enzyme RM.BpuSI in cleavage activity |
Q42957729 | The single polypeptide restriction-modification enzyme LlaGI is a self-contained molecular motor that translocates DNA loops |
Q27653121 | The structure of M.EcoKI Type I DNA methyltransferase with a DNA mimic antirestriction protein |
Q31030715 | Tracking EcoKI and DNA fifty years on: a golden story full of surprises |
Q34768582 | Two novel PIWI families: roles in inter-genomic conflicts in bacteria and Mediator-dependent modulation of transcription in eukaryotes |
Q37215369 | Type I restriction endonucleases are true catalytic enzymes |
Q38143721 | Type I restriction enzymes and their relatives. |
Q42131651 | Type III restriction endonuclease EcoP15I is a heterotrimeric complex containing one Res subunit with several DNA-binding regions and ATPase activity |
Q30494970 | Type III restriction enzymes cleave DNA by long-range interaction between sites in both head-to-head and tail-to-tail inverted repeat |
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